Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017610

Physical Location & Seq

Genomic Coordinates Forward (+)

66247708 .. 66249283

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG508700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGAAGAAGTCCTTGTTGTGTGAAGGAGGGACTGAACAGAGGAGCTTGGACTGCTATTGAGGACCAAGTTCTCATAGACTACATCAACACCCATGGAGAAGGAAAATGGAGAAGAATTCCCAAAGAAGCTGGTCTAAAGAGATGCGGAAAGAGCTGCAGACTGAGGTGGCTGAATTATCTGAGACCTGATATCAAAAGGGGTAATATAACTCAGGAAGAAGAGGATCTCATCATTAGGCTCCACAAGCTACTAGGCAACAGATGGTCCCTAATAGCTGGGAGAATACCAGGACGAACAGACAATGAAATCAAGAATTACTGGAACACGACCTTAGGAAAGAAGGTGAATAACGGCCAGGATGATGTTCGTCAAGTACATCTAACGGTAGAGAATAAGAATAAGAAGAAGAAGAAGAAGAAGAAATATAAAACTAAATCGTTGACAACGGTGCTGGACTCCATTGCTGCCATCCGTACAAGGGCAGTGAGATGCAACAGAGTAGTAGTCACCTCGCACTTAGTCCCGCACCCATTAGTCAAAAATGTTCATGGTACTGCTTTGGAAGAGGGCATAAATAACTCTGAGGAAGACAACACTATTACTACCACCACCACCACTACTACTTCCCCTTCAGAGAATTTGGTGTTAGAATTTGATGTGGGGAAGCTCTTTAGTGTGTCGGAAAATATTCCAGATAGCTCCGACGACTACTGGGAACTATGTCAGTTTGGTGGCGGTGACAAACGTTTGGAGGATCAATACGGTGGCAATATCAATAATGGTGGTGGTAGCTCAAACAATTACAAGTGGTCCTCAGCTAGCTCCGAACCAATCTTGTTCTCGGAGGAAATGCTCAAGGATTGGATGAGAGAGGACTGTTTCCACCATCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

299

Amino Acids

33.97

Weight (kDa)

8.95

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	2.8e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	4.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 120	1.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31080
malus_domestica	MD15G1051000.v1.1
prunus_persica	Prupe.1G405200_v2.0.a1
pyrus_communis	pycom15g04910
rosa_chinensis	RchiOBHm_Chr6g0311711
rosa_laevigata	RLG00000010380
rosa_multiflora	Rmu_sc0002888.1_g000021
rosa_roxburghii	Rroxscaffold_7G00157370
rosa_samantha	Rh6BG517100 Rh6CG523000 Rh6DG508700
rosa_wichuraiana	Rw6G044050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	147, 527, 738
AclI	AACGTT	1 cut(s)	748
AclWI	GGATC	2 cut(s)	234, 765
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	3 cut(s)	117, 640, 653
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	3 cut(s)	378, 478, 556
AfiI	CCNNNNNNNGG	1 cut(s)	481
AjnI	CCWGG	2 cut(s)	289, 357
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	234, 765
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	2 cut(s)	156, 467
ApoI	RAATTY	3 cut(s)	117, 640, 653
Asp700I	GAANNNNTTC	1 cut(s)	690
AspS9I	GGNCC	3 cut(s)	64, 267, 813
AsuHPI	GGTGA	3 cut(s)	358, 502, 752
AsuNHI	GCTAGC	1 cut(s)	821
AvaII	GGWCC	3 cut(s)	64, 267, 813
AxyI	CCTNAGG	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	597
BbvCI	CCTCAGC	1 cut(s)	817
BbvI	GCAGC	2 cut(s)	143, 454
BccI	CCATC	3 cut(s)	258, 479, 897
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	2 cut(s)	291, 359
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	2 cut(s)	254, 822
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	2 cut(s)	157, 468
BlsI	GCNGC	2 cut(s)	158, 469
Bme1390I	CCNGG	2 cut(s)	291, 359
Bme18I	GGWCC	3 cut(s)	64, 267, 813
BmgT120I	GGNCC	3 cut(s)	64, 267, 813
BmiI	GGNNCC	2 cut(s)	242, 269
BmrFI	CCNGG	2 cut(s)	291, 359
BmrI	ACTGGG	1 cut(s)	724
BmsI	GCATC	2 cut(s)	134, 482
BmtI	GCTAGC	1 cut(s)	825
BmuI	ACTGGG	1 cut(s)	724
BpiI	GAAGAC	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	817
BpuEI	CTTGAG	1 cut(s)	842
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	2 cut(s)	326, 719
Bse21I	CCTNAGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	291, 359
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	3 cut(s)	367, 471, 873
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	5 cut(s)	155, 173, 227, 576, 831
BseNI	ACTGG	2 cut(s)	326, 719
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	143, 454
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	357
BslFI	GGGAC	3 cut(s)	45, 253, 509
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	3 cut(s)	45, 253, 509
BsnI	GGCC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	226, 757
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	3 cut(s)	147, 527, 738
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	5 cut(s)	156, 174, 226, 577, 830
BspLI	GGNNCC	2 cut(s)	242, 269
BspMAI	CTGCAG	1 cut(s)	161
BspOI	GCTAGC	1 cut(s)	825
BspPI	GGATC	2 cut(s)	234, 765
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	326, 719
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	226, 757
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	291, 359
Bst4CI	ACNGT	4 cut(s)	388, 451, 767, 881
Bst6I	CTCTTC	2 cut(s)	216, 561
BstC8I	GCNNGC	1 cut(s)	823
BstDEI	CTNAG	7 cut(s)	164, 182, 213, 334, 520, 585, 817
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	367, 471, 873
BstKTI	GATC	2 cut(s)	229, 760
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	226, 757
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 153, 247
BstNI	CCWGG	2 cut(s)	291, 359
BstSCI	CCNGG	2 cut(s)	289, 357
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	143, 454
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
Bsu36I	CCTNAGG	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	367, 471, 873
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	823
Cfr13I	GGNCC	3 cut(s)	64, 267, 813
Csp6I	GTAC	3 cut(s)	377, 477, 555
CspCI	CAANNNNNGTGG	2 cut(s)	766, 801
CviAII	CATG	2 cut(s)	95, 551
CviQI	GTAC	3 cut(s)	377, 477, 555
DdeI	CTNAG	7 cut(s)	164, 182, 213, 334, 520, 585, 817
DpnI	GATC	2 cut(s)	228, 759
DpnII	GATC	2 cut(s)	226, 757
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	216, 561
EarI	CTCTTC	2 cut(s)	216, 561
Eco130I	CCWWGG	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	3 cut(s)	64, 267, 813
Eco57I	CTGAAG	1 cut(s)	618
Eco81I	CCTNAGG	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	289, 357
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	98, 554
FaiI	YATR	7 cut(s)	77, 96, 209, 429, 552, 575, 724
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	3 cut(s)	45, 253, 509
FatI	CATG	2 cut(s)	94, 550
FauI	CCCGC	1 cut(s)	534
Fnu4HI	GCNGC	2 cut(s)	157, 468
FokI	GGATG	3 cut(s)	374, 458, 880
Fsp4HI	GCNGC	2 cut(s)	157, 468
FspBI	CTAG	2 cut(s)	254, 822
GluI	GCNGC	2 cut(s)	157, 468
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	98, 554
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	1 cut(s)	458
HphI	GGTGA	3 cut(s)	358, 502, 752
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	7 cut(s)	183, 586, 637, 685, 706, 829, 847
Hpy188III	TCNNGA	3 cut(s)	215, 313, 695
Hpy8I	GTNNAC	1 cut(s)	444
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	4 cut(s)	19, 95, 337, 642
HpyCH4III	ACNGT	4 cut(s)	388, 451, 767, 881
HpyCH4IV	ACGT	1 cut(s)	748
HpyCH4V	TGCA	2 cut(s)	159, 495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 153, 247
HpyF3I	CTNAG	7 cut(s)	164, 182, 213, 334, 520, 585, 817
HpySE526I	ACGT	1 cut(s)	748
Hsp92II	CATG	2 cut(s)	98, 554
Kzo9I	GATC	2 cut(s)	226, 757
LmnI	GCTCC	4 cut(s)	44, 246, 707, 830
Lsp1109I	GCAGC	2 cut(s)	143, 454
LweI	GCATC	2 cut(s)	134, 482
MaeI	CTAG	2 cut(s)	254, 822
MaeII	ACGT	1 cut(s)	748
MaeIII	GTNAC	2 cut(s)	508, 740
MalI	GATC	2 cut(s)	228, 759
MboI	GATC	2 cut(s)	226, 757
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	6 cut(s)	117, 175, 316, 640, 653, 802
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	663, 729
MroXI	GAANNNNTTC	1 cut(s)	690
MspR9I	CCNGG	2 cut(s)	291, 359
MvaI	CCWGG	2 cut(s)	291, 359
MwoI	GCNNNNNNNGC	3 cut(s)	53, 153, 247
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	226, 757
NheI	GCTAGC	1 cut(s)	821
NlaIII	CATG	2 cut(s)	98, 554
NlaIV	GGNNCC	2 cut(s)	242, 269
NmuCI	GTSAC	2 cut(s)	508, 740
PdmI	GAANNNNTTC	1 cut(s)	690
PkrI	GCNGC	2 cut(s)	158, 469
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Psp1406I	AACGTT	1 cut(s)	748
Psp6I	CCWGG	2 cut(s)	289, 357
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	289, 357
PspN4I	GGNNCC	2 cut(s)	242, 269
PspPI	GGNCC	3 cut(s)	64, 267, 813
PstI	CTGCAG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	3 cut(s)	378, 478, 556
RsaNI	GTAC	3 cut(s)	377, 477, 555
SatI	GCNGC	2 cut(s)	157, 468
Sau3AI	GATC	2 cut(s)	226, 757
Sau96I	GGNCC	3 cut(s)	64, 267, 813
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	291, 359
SfaNI	GCATC	2 cut(s)	134, 482
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	3 cut(s)	64, 267, 813
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
Sse9I	AATT	6 cut(s)	117, 175, 316, 640, 653, 802
SsiI	CCGC	3 cut(s)	147, 527, 738
SspI	AATATT	1 cut(s)	691
SspMI	CTAG	2 cut(s)	254, 822
StyD4I	CCNGG	2 cut(s)	289, 357
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	4 cut(s)	388, 451, 767, 881
TaiI	ACGT	1 cut(s)	751
TasI	AATT	6 cut(s)	117, 175, 316, 640, 653, 802
TatI	WGTACW	1 cut(s)	376
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	2 cut(s)	508, 740
TseI	GCWGC	2 cut(s)	156, 467
Tsp45I	GTSAC	2 cut(s)	508, 740
TspDTI	ATGAA	2 cut(s)	321, 539
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	1 cut(s)	492
VpaK11BI	GGWCC	3 cut(s)	64, 267, 813
XapI	RAATTY	3 cut(s)	117, 640, 653
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	2 cut(s)	254, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.