FvH4_2g31620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016765
Physical Location & Seq
Forward (+)
24197387 .. 24198924
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31620.t1

Sequence Viewer

Length: 909 bp
ATGGGAAGAACCATTCCCACGGATGAAAACGACTTGCTGATTCCTCCGGTGCTTTCATTCTCACTCTTTGCTGCTGGCATGGCTGCAGCCACCTTTGCCATGATCACAGCTCTTTGTAGTTTTAGACGAAAAGCGCAGCGTAATGTTAATCATGAGGATATTCTACAATCTCCGGACGTGTTAAAAACGAAAGAGGAGGGTGTGGCTGATGTGAAAACAAGAGAAGAACCAGCAGCAGCAATGTCGAACGAGACAATAGCGCCCCAAGAACCCGAAACAGAAGATATTCAGGAAGATGAAGATGGAGATGATTTAAAAAACAAAGAACTCCCGCTTCCACCAGGAATGAAGACGTCAGGGATAGGAGCGCAGGCGGTTAATTCTTGGAATGCAAGCAATGCCAATACGACGACGTCTCAGATGAAGAAATCGGCTTCGGATAGACGATTGCTGTCGAGTTTGAGCCTCAAGCTACCGAGAAGCTTGTCGATGGCGAGAAGAGGAGAGAAAAGTAAGGACGAGGCTAACTTTAATAAACGAAAGAACAACGGGAGAAAGTTGTCAATGTCGTCAGTGACGTCCATGGCGTCAATGACGAAACAGGAAGAATCGATTTGGATGAAGACGATCATATTAGGAGAGAAAAATAGAGTGCCAGATGAAGATGACGATGCTGCTATGATCTACGATTCCAAAGGAAGAAGAATCCCGGCTTACCACCCGAAAAGTAGGCAAAACTCGTTCATTGATCAAAGAGCACTTCCCAGCCAGATTAGGAGTAGGCAATGCTCCTTCATTGATCCAAGTGCAATACCAGATCAAAGGTCAAGCAATGCCACAAGAGATGGAGATCATCGTGAAATGATCAGTGAGGATGAACAAGAATTGATGTCCTTGTCTCAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

33.56

Weight (kDa)

5.64

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016765)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31620
malus_domestica MD15G1056900.v1.1
prunus_persica Prupe.1G409500_v2.0.a1
pyrus_communis pycom08g05300 pycom15g05330
rosa_chinensis RchiOBHm_Chr6g0311201
rosa_laevigata RLG00000010428
rosa_multiflora Rmu_co8149324.1_g000001
rosa_roxburghii Rroxscaffold_7G00157910
rosa_rugosa Rorug06G0386300
rosa_samantha Rh6AG500500 Rh6BG511100 Rh6CG516900 Rh6DG503400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 356, 416, 581
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 2 cut(s) 332, 374
AclWI GGATC 1 cut(s) 794
AcyI GRCGYC 4 cut(s) 353, 413, 578, 587
AflIII ACRYGT 1 cut(s) 177
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 3 cut(s) 110, 472, 483
AluI AGCT 3 cut(s) 110, 472, 483
Alw21I GWGCWC 1 cut(s) 760
Alw26I GTCTC 3 cut(s) 245, 420, 903
AlwI GGATC 1 cut(s) 794
Aor13HI TCCGGA 1 cut(s) 172
ApeKI GCWGC 7 cut(s) 71, 83, 86, 136, 233, 236, 674
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 3 cut(s) 136, 262, 370
AsuC2I CCSGG 1 cut(s) 710
BbsI GAAGAC 2 cut(s) 356, 629
Bbv12I GWGCWC 1 cut(s) 760
BbvI GCAGC 7 cut(s) 58, 70, 98, 148, 245, 248, 661
BccI CCATC 3 cut(s) 296, 484, 839
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 3 cut(s) 102, 748, 864
BcnI CCSGG 1 cut(s) 710
BcoDI GTCTC 3 cut(s) 245, 420, 903
BfmI CTRYAG 1 cut(s) 84
BfoI RGCGCY 1 cut(s) 263
BisI GCNGC 7 cut(s) 72, 84, 87, 137, 234, 237, 675
BlsI GCNGC 7 cut(s) 73, 85, 88, 138, 235, 238, 676
Bme1390I CCNGG 2 cut(s) 342, 710
BmgBI CACGTC 1 cut(s) 178
BmrFI CCNGG 2 cut(s) 342, 710
BmsI GCATC 1 cut(s) 661
BpiI GAAGAC 2 cut(s) 356, 629
BpuEI CTTGAG 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 710
Bsa29I ATCGAT 1 cut(s) 611
BsaBI GATNNNNATC 1 cut(s) 849
BsaHI GRCGYC 4 cut(s) 353, 413, 578, 587
BsaJI CCNNGG 2 cut(s) 18, 582
BsaWI WCCGGW 2 cut(s) 46, 172
Bse3DI GCAATG 4 cut(s) 246, 403, 791, 838
Bse8I GATNNNNATC 1 cut(s) 849
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 1 cut(s) 342
BseCI ATCGAT 1 cut(s) 611
BseDI CCNNGG 2 cut(s) 18, 582
BseGI GGATG 3 cut(s) 28, 624, 880
BseJI GATNNNNATC 1 cut(s) 849
BseMI GCAATG 4 cut(s) 246, 403, 791, 838
BseMII CTCAG 1 cut(s) 431
BseRI GAGGAG 2 cut(s) 209, 516
BseXI GCAGC 7 cut(s) 58, 70, 98, 148, 245, 248, 661
BseYI CCCAGC 1 cut(s) 764
BshVI ATCGAT 1 cut(s) 611
BsiHKAI GWGCWC 1 cut(s) 760
BsiSI CCGG 3 cut(s) 47, 173, 710
BsmAI GTCTC 3 cut(s) 245, 420, 903
BsmBI CGTCTC 1 cut(s) 420
BsmI GAATGC 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 760
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 8 cut(s) 102, 627, 681, 748, 799, 817, 850, 864
Bsp19I CCATGG 1 cut(s) 582
BspACI CCGC 2 cut(s) 332, 374
BspCNI CTCAG 1 cut(s) 430
BspDI ATCGAT 1 cut(s) 611
BspEI TCCGGA 1 cut(s) 172
BspHI TCATGA 1 cut(s) 151
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 1 cut(s) 794
BsrDI GCAATG 4 cut(s) 246, 403, 791, 838
BssECI CCNNGG 2 cut(s) 18, 582
BssMI GATC 8 cut(s) 102, 627, 681, 748, 799, 817, 850, 864
BssNI GRCGYC 4 cut(s) 353, 413, 578, 587
BssT1I CCWWGG 1 cut(s) 582
Bst2UI CCWGG 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 493
BstACI GRCGYC 4 cut(s) 353, 413, 578, 587
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 3 cut(s) 76, 372, 394
BstDEI CTNAG 1 cut(s) 417
BstDSI CCRYGG 2 cut(s) 18, 582
BstF5I GGATG 3 cut(s) 28, 624, 880
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 3 cut(s) 136, 262, 370
BstKTI GATC 8 cut(s) 105, 630, 684, 751, 802, 820, 853, 867
BstMAI GTCTC 3 cut(s) 245, 420, 903
BstMBI GATC 8 cut(s) 102, 627, 681, 748, 799, 817, 850, 864
BstMWI GCNNNNNNNGC 3 cut(s) 80, 95, 398
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 2 cut(s) 340, 708
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 7 cut(s) 58, 70, 98, 148, 245, 248, 661
BstV2I GAAGAC 2 cut(s) 356, 629
Bsu15I ATCGAT 1 cut(s) 611
BsuTUI ATCGAT 1 cut(s) 611
BtgI CCRYGG 2 cut(s) 18, 582
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 3 cut(s) 28, 624, 880
BtsIMutI CAGTG 2 cut(s) 579, 874
Cac8I GCNNGC 3 cut(s) 76, 372, 394
CciI TCATGA 1 cut(s) 151
CfoI GCGC 3 cut(s) 136, 262, 370
ClaI ATCGAT 1 cut(s) 611
CseI GACGC 1 cut(s) 576
CviAII CATG 4 cut(s) 79, 100, 152, 583
DdeI CTNAG 1 cut(s) 417
DpnI GATC 8 cut(s) 104, 629, 683, 750, 801, 819, 852, 866
DpnII GATC 8 cut(s) 102, 627, 681, 748, 799, 817, 850, 864
DraI TTTAAA 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 493
EarI CTCTTC 1 cut(s) 493
Eco130I CCWWGG 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 582
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 4 cut(s) 82, 103, 155, 586
FaiI YATR 6 cut(s) 80, 101, 153, 584, 632, 680
FatI CATG 4 cut(s) 78, 99, 151, 582
FauI CCCGC 1 cut(s) 339
FbaI TGATCA 3 cut(s) 102, 748, 864
Fnu4HI GCNGC 7 cut(s) 72, 84, 87, 137, 234, 237, 675
FokI GGATG 3 cut(s) 35, 631, 887
Fsp4HI GCNGC 7 cut(s) 72, 84, 87, 137, 234, 237, 675
GlaI GCGC 3 cut(s) 135, 261, 369
GluI GCNGC 7 cut(s) 72, 84, 87, 137, 234, 237, 675
GsaI CCCAGC 1 cut(s) 768
HaeII RGCGCY 1 cut(s) 263
HapII CCGG 3 cut(s) 47, 173, 710
HgaI GACGC 1 cut(s) 576
HhaI GCGC 3 cut(s) 136, 262, 370
Hin1I GRCGYC 4 cut(s) 353, 413, 578, 587
Hin1II CATG 4 cut(s) 82, 103, 155, 586
Hin6I GCGC 3 cut(s) 134, 260, 368
HinP1I GCGC 3 cut(s) 134, 260, 368
HindIII AAGCTT 1 cut(s) 481
HinfI GANTC 4 cut(s) 40, 608, 689, 705
HpaII CCGG 3 cut(s) 47, 173, 710
Hpy188I TCNGA 3 cut(s) 420, 439, 908
Hpy188III TCNNGA 4 cut(s) 152, 173, 290, 857
Hpy99I CGWCG 2 cut(s) 412, 415
HpyAV CCTTC 1 cut(s) 802
HpyCH4IV ACGT 4 cut(s) 177, 353, 413, 578
HpyCH4V TGCA 3 cut(s) 86, 392, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 95, 398
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 4 cut(s) 177, 353, 413, 578
Hsp92I GRCGYC 4 cut(s) 353, 413, 578, 587
Hsp92II CATG 4 cut(s) 82, 103, 155, 586
HspAI GCGC 3 cut(s) 134, 260, 368
Kpn2I TCCGGA 1 cut(s) 172
Ksp22I TGATCA 3 cut(s) 102, 748, 864
Kzo9I GATC 8 cut(s) 102, 627, 681, 748, 799, 817, 850, 864
LmnI GCTCC 2 cut(s) 365, 794
Lsp1109I GCAGC 7 cut(s) 58, 70, 98, 148, 245, 248, 661
LweI GCATC 1 cut(s) 661
MaeII ACGT 4 cut(s) 177, 353, 413, 578
MaeIII GTNAC 1 cut(s) 574
MalI GATC 8 cut(s) 104, 629, 683, 750, 801, 819, 852, 866
MboI GATC 8 cut(s) 102, 627, 681, 748, 799, 817, 850, 864
MhlI GDGCHC 1 cut(s) 760
MluCI AATT 2 cut(s) 379, 884
MnlI CCTC 8 cut(s) 54, 148, 187, 190, 476, 494, 514, 865
MroI TCCGGA 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 5 cut(s) 147, 182, 314, 378, 531
MspI CCGG 3 cut(s) 47, 173, 710
MspR9I CCNGG 2 cut(s) 342, 710
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 80, 95, 398
NciI CCSGG 1 cut(s) 710
NcoI CCATGG 1 cut(s) 582
NdeII GATC 8 cut(s) 102, 627, 681, 748, 799, 817, 850, 864
NlaIII CATG 4 cut(s) 82, 103, 155, 586
NmuCI GTSAC 1 cut(s) 574
PagI TCATGA 1 cut(s) 151
PcsI WCGNNNNNNNCGW 2 cut(s) 575, 584
PctI GAATGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 4 cut(s) 40, 608, 689, 705
PflFI GACNNNGTC 1 cut(s) 412
PkrI GCNGC 7 cut(s) 73, 85, 88, 138, 235, 238, 676
Psp6I CCWGG 1 cut(s) 340
PspFI CCCAGC 1 cut(s) 764
PspGI CCWGG 1 cut(s) 340
PstI CTGCAG 1 cut(s) 88
PsyI GACNNNGTC 1 cut(s) 412
SaqAI TTAA 5 cut(s) 147, 182, 314, 378, 531
SatI GCNGC 7 cut(s) 72, 84, 87, 137, 234, 237, 675
Sau3AI GATC 8 cut(s) 102, 627, 681, 748, 799, 817, 850, 864
ScrFI CCNGG 2 cut(s) 342, 710
SduI GDGCHC 1 cut(s) 760
SetI ASST 9 cut(s) 95, 112, 180, 356, 416, 474, 485, 581, 827
SfaNI GCATC 1 cut(s) 661
SfcI CTRYAG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 2 cut(s) 379, 884
SsiI CCGC 2 cut(s) 332, 374
StyD4I CCNGG 2 cut(s) 340, 708
StyI CCWWGG 1 cut(s) 582
TaiI ACGT 4 cut(s) 180, 356, 416, 581
TaqI TCGA 4 cut(s) 245, 455, 488, 611
TasI AATT 2 cut(s) 379, 884
TfiI GAWTC 4 cut(s) 40, 608, 689, 705
Tru1I TTAA 5 cut(s) 147, 182, 314, 378, 531
Tru9I TTAA 5 cut(s) 147, 182, 314, 378, 531
TscAI CASTG 2 cut(s) 579, 874
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 7 cut(s) 71, 83, 86, 136, 233, 236, 674
Tsp45I GTSAC 1 cut(s) 574
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 2 cut(s) 579, 874
Tth111I GACNNNGTC 1 cut(s) 412
XmnI GAANNNNTTC 1 cut(s) 285
ZraI GACGTC 3 cut(s) 354, 414, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.