Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8149324.1

Orthogroup ID

OG0016765

Physical Location & Seq

Genomic Coordinates Forward (+)

15 .. 649

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8149324.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 635 bp

atgtcgaacgagaccacagcaccccaagaacccgaaacagtagatgaggaaaaggaaaatgaagatggagcagattttaaaacaaaagaactcccacttcctccaggaaagaaggccttagggttagaagctcggacgactaattgttggaatgcaagcaatgtcaatacgacaacatctcagataaagaaatcggcttctgaaagacggctgctgtcgaatttgagcatcaagctaccgagaagcttgtcaatggcgaaaaggggagagaaaagtaaggacgagtctaataacaaacgaaagaacggaagaaagttgtccatgtcgtcaatcacgaaacaggaagaatcgatttggatgaagacgatcatattaggggagaaatgtaaagtgccagaagaagatgacattgtgatttacgatgccaagggaagaaaaatcccggcataccacccgaaaagtaggcaaaactccttaattgatcagacagcaattccgaaccagtttaacagtaggcaatggtccttcattgatccaagtgcaattccagatcaaagaagaagcaatgccacaaatgtagaaatagatcaaaacaaaaaagatggagatcatcaaaaaatgatcagttcggatca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.82

Weight (kDa)

8.94

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31620
malus_domestica	MD15G1056900.v1.1
prunus_persica	Prupe.1G409500_v2.0.a1
pyrus_communis	pycom08g05300 pycom15g05330
rosa_chinensis	RchiOBHm_Chr6g0311201
rosa_laevigata	RLG00000010428
rosa_multiflora	Rmu_co8149324.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157910
rosa_rugosa	Rorug06G0386300
rosa_samantha	Rh6AG500500 Rh6BG511100 Rh6CG516900 Rh6DG503400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	527
AcsI	RAATTY	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	3 cut(s)	131, 235, 246
AluI	AGCT	3 cut(s)	131, 235, 246
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	527
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	522
AsuC2I	CCSGG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	522
AxyI	CCTNAGG	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	2 cut(s)	59, 596
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	105
BclI	TGATCA	2 cut(s)	481, 621
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	5
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	2 cut(s)	105, 443
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	522
BmrFI	CCNGG	2 cut(s)	105, 443
BmsI	GCATC	2 cut(s)	237, 412
BpiI	GAAGAC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	426
Bse1I	ACTGG	1 cut(s)	502
Bse21I	CCTNAGG	1 cut(s)	118
Bse3DI	GCAATG	3 cut(s)	166, 524, 571
Bse8I	GATNNNNATC	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	1 cut(s)	363
BseJI	GATNNNNATC	1 cut(s)	606
BseMI	GCAATG	3 cut(s)	166, 524, 571
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	198
BshFI	GGCC	1 cut(s)	116
BshVI	ATCGAT	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	5
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	5
Bsp143I	GATC	8 cut(s)	366, 481, 532, 550, 586, 607, 621, 631
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	193
BspDI	ATCGAT	1 cut(s)	350
BspPI	GGATC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	5
BsrDI	GCAATG	3 cut(s)	166, 524, 571
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	8 cut(s)	366, 481, 532, 550, 586, 607, 621, 631
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	40, 512
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	118, 180
BstF5I	GGATG	1 cut(s)	363
BstKTI	GATC	8 cut(s)	369, 484, 535, 553, 589, 610, 624, 634
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	8 cut(s)	366, 481, 532, 550, 586, 607, 621, 631
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	103, 441
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	368
Bsu15I	ATCGAT	1 cut(s)	350
Bsu36I	CCTNAGG	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	522
ClaI	ATCGAT	1 cut(s)	350
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	6 cut(s)	116, 131, 197, 211, 235, 246
CviKI_1	RGCY	6 cut(s)	116, 131, 197, 211, 235, 246
DdeI	CTNAG	2 cut(s)	118, 180
DpnI	GATC	8 cut(s)	368, 483, 534, 552, 588, 609, 623, 633
DpnII	GATC	8 cut(s)	366, 481, 532, 550, 586, 607, 621, 631
DraI	TTTAAA	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	426
Eco147I	AGGCCT	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	522
Eco81I	CCTNAGG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	1 cut(s)	325
FaiI	YATR	3 cut(s)	323, 371, 448
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FatI	CATG	1 cut(s)	321
FbaI	TGATCA	2 cut(s)	481, 621
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	370
Fsp4HI	GCNGC	1 cut(s)	212
GluI	GCNGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	443
Hin1II	CATG	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	2 cut(s)	284, 347
HpaII	CCGG	1 cut(s)	443
Hpy188I	TCNGA	6 cut(s)	135, 183, 202, 486, 498, 631
Hpy188III	TCNNGA	2 cut(s)	334, 548
HpyAV	CCTTC	2 cut(s)	106, 535
HpyCH4III	ACNGT	2 cut(s)	40, 512
HpyCH4V	TGCA	2 cut(s)	155, 542
HpyF3I	CTNAG	2 cut(s)	118, 180
Hsp92II	CATG	1 cut(s)	325
Ksp22I	TGATCA	2 cut(s)	481, 621
Kzo9I	GATC	8 cut(s)	366, 481, 532, 550, 586, 607, 621, 631
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	7 cut(s)	90, 117, 326, 408, 456, 515, 561
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	2 cut(s)	237, 412
MalI	GATC	8 cut(s)	368, 483, 534, 552, 588, 609, 623, 633
MboI	GATC	8 cut(s)	366, 481, 532, 550, 586, 607, 621, 631
MboII	GAAGA	8 cut(s)	74, 321, 356, 373, 410, 413, 444, 570
MluCI	AATT	5 cut(s)	142, 220, 477, 492, 543
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	2 cut(s)	40, 111
MseI	TTAA	3 cut(s)	78, 476, 507
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	105, 443
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	105
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	8 cut(s)	366, 481, 532, 550, 586, 607, 621, 631
NlaIII	CATG	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	522
SaqAI	TTAA	3 cut(s)	78, 476, 507
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	8 cut(s)	366, 481, 532, 550, 586, 607, 621, 631
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	105, 443
SetI	ASST	3 cut(s)	133, 237, 248
SfaNI	GCATC	2 cut(s)	237, 412
SinI	GGWCC	1 cut(s)	522
Sse9I	AATT	5 cut(s)	142, 220, 477, 492, 543
SseBI	AGGCCT	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	103, 441
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	2 cut(s)	40, 512
TaqI	TCGA	3 cut(s)	5, 218, 350
TasI	AATT	5 cut(s)	142, 220, 477, 492, 543
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	3 cut(s)	78, 476, 507
Tru9I	TTAA	3 cut(s)	78, 476, 507
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	75, 374, 517
TspGWI	ACGGA	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.