Rroxscaffold_7G00157910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016765
Physical Location & Seq
Forward (+)
1580790 .. 1581716
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157910.1

Sequence Viewer

Length: 927 bp
ATGGGAAGAAGCATACCCACGGATGAAGCCGACGTGCTGATTCATCCGGTGTTTCCATTGTCACTCTTTGCTGCTGGGATGGCCGCAGCTACCATTGCCATGATCACAGCTCTTTGTAGTTTTAGACGAAAAAGGCCGCGTAATGTTGATGAGGATATGCTACAATCTCCGGGCGCAACAAAGACGAAAGACGAAGCACTACAACCTGATGATGTGAAAACAACAGAAGAACCAGCAGAACAAGCAGCAACAACAACAGCAATGTCGAACGAGACCACAGCACCCCAAGAACCCGAAACAGTAGATGAGGAAAAGGAAAATGAAGATGGAGCAGATTTTAAAACAAAAGAACTCCCACTTCCTCCAGGAAAGAAGGCCTTAGGGTTAGAAGCTCGGACGACTAATTGTTGGAATGCAAGCAATGTCAATACGACAACATCTCAGATAAAGAAATCGGCTTCTGAGAGACGGCTGCTGTCGAATTTGAGCATCAAGCTACCGAGAAGCTTGTCAATGGCGAAAAGGGGAGAGAAAAGTAAGGACGAGTCTAATGACAAACGAAAGAACGGGAGAAAGTTGTCCATGTCGTCAATGACGAAACAGGAAGAATCAATTTGGATGAAGACGATCATATTAGGGGAGAAATGTAAAGTGCCAGAAGAAGATGACATTGGGATTTACGATGCCAAGGGAAGAAAAATCCCGGCTTACCACCCGAAAAGTAGGCAAAACTCCTTTATTGATCAGACCGCAATTCCGAACCAGTTTAACAGTAGGCAATGGTCCTTCATTGATCCAAGTGCAATTCCAGATCAAAGAAGAAGCAATGCCTCAAATGTAGAAATAGATCAAGACAAAAAAGATGGAGATCATCAAAAAATGATCAGTTCGGATCACGAAGAATTAATGTCCTTGTCTCAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

34.3

Weight (kDa)

5.78

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016765)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31620
malus_domestica MD15G1056900.v1.1
prunus_persica Prupe.1G409500_v2.0.a1
pyrus_communis pycom08g05300 pycom15g05330
rosa_chinensis RchiOBHm_Chr6g0311201
rosa_laevigata RLG00000010428
rosa_multiflora Rmu_co8149324.1_g000001
rosa_roxburghii Rroxscaffold_7G00157910
rosa_rugosa Rorug06G0386300
rosa_samantha Rh6AG500500 Rh6BG511100 Rh6CG516900 Rh6DG503400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 139
AciI CCGC 3 cut(s) 84, 137, 750
AclWI GGATC 2 cut(s) 788, 900
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 481
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 364
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 5 cut(s) 89, 110, 392, 496, 507
AluI AGCT 5 cut(s) 89, 110, 392, 496, 507
Alw26I GTCTC 3 cut(s) 266, 460, 921
AlwI GGATC 2 cut(s) 788, 900
AoxI GGCC 3 cut(s) 81, 134, 375
ApeKI GCWGC 4 cut(s) 71, 86, 245, 472
ApoI RAATTY 1 cut(s) 481
AseI ATTAAT 1 cut(s) 905
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 783
AsuC2I CCSGG 2 cut(s) 171, 704
AvaII GGWCC 1 cut(s) 783
AxyI CCTNAGG 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 629
BbvI GCAGC 4 cut(s) 58, 98, 257, 459
BccI CCATC 3 cut(s) 73, 320, 857
BceAI ACGGC 1 cut(s) 485
BciT130I CCWGG 1 cut(s) 366
BclI TGATCA 3 cut(s) 102, 742, 882
BcnI CCSGG 2 cut(s) 171, 704
BcoDI GTCTC 3 cut(s) 266, 460, 921
BisI GCNGC 6 cut(s) 72, 84, 87, 137, 246, 473
BlsI GCNGC 6 cut(s) 73, 85, 88, 138, 247, 474
Bme1390I CCNGG 3 cut(s) 171, 366, 704
Bme18I GGWCC 1 cut(s) 783
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 783
BmrFI CCNGG 3 cut(s) 171, 366, 704
BmsI GCATC 2 cut(s) 498, 673
BpiI GAAGAC 1 cut(s) 629
BpmI CTGGAG 1 cut(s) 348
BpuMI CCSGG 2 cut(s) 171, 704
BsaBI GATNNNNATC 1 cut(s) 867
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 18, 687
BsaWI WCCGGW 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 763
Bse21I CCTNAGG 1 cut(s) 379
Bse3DI GCAATG 5 cut(s) 93, 267, 427, 785, 832
Bse8I GATNNNNATC 1 cut(s) 867
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 18, 687
BseGI GGATG 4 cut(s) 28, 43, 84, 624
BseJI GATNNNNATC 1 cut(s) 867
BseMI GCAATG 5 cut(s) 93, 267, 427, 785, 832
BseMII CTCAG 2 cut(s) 453, 455
BseNI ACTGG 1 cut(s) 763
BseXI GCAGC 4 cut(s) 58, 98, 257, 459
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 83, 136, 377
BsiSI CCGG 3 cut(s) 47, 170, 704
BsmAI GTCTC 3 cut(s) 266, 460, 921
BsmBI CGTCTC 1 cut(s) 460
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 3 cut(s) 83, 136, 377
Bso31I GGTCTC 1 cut(s) 266
Bsp143I GATC 9 cut(s) 102, 627, 742, 793, 811, 847, 868, 882, 892
BspACI CCGC 3 cut(s) 84, 137, 750
BspANI GGCC 3 cut(s) 83, 136, 377
BspCNI CTCAG 2 cut(s) 454, 454
BspFNI CGCG 1 cut(s) 139
BspPI GGATC 2 cut(s) 788, 900
BspTNI GGTCTC 1 cut(s) 266
BsrDI GCAATG 5 cut(s) 93, 267, 427, 785, 832
BsrI ACTGG 1 cut(s) 763
BssECI CCNNGG 2 cut(s) 18, 687
BssMI GATC 9 cut(s) 102, 627, 742, 793, 811, 847, 868, 882, 892
BssT1I CCWWGG 1 cut(s) 687
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 2 cut(s) 301, 773
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 3 cut(s) 379, 441, 462
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 4 cut(s) 28, 43, 84, 624
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 9 cut(s) 105, 630, 745, 796, 814, 850, 871, 885, 895
BstMAI GTCTC 3 cut(s) 266, 460, 921
BstMBI GATC 9 cut(s) 102, 627, 742, 793, 811, 847, 868, 882, 892
BstMWI GCNNNNNNNGC 3 cut(s) 80, 95, 242
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 3 cut(s) 169, 364, 702
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 4 cut(s) 58, 98, 257, 459
BstV2I GAAGAC 1 cut(s) 629
Bsu36I CCTNAGG 1 cut(s) 379
BsuRI GGCC 3 cut(s) 83, 136, 377
BtgI CCRYGG 1 cut(s) 18
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 4 cut(s) 28, 43, 84, 624
Cac8I GCNNGC 1 cut(s) 418
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 783
CviAII CATG 2 cut(s) 100, 583
DdeI CTNAG 3 cut(s) 379, 441, 462
DpnI GATC 9 cut(s) 104, 629, 744, 795, 813, 849, 870, 884, 894
DpnII GATC 9 cut(s) 102, 627, 742, 793, 811, 847, 868, 882, 892
DraI TTTAAA 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 687
Eco147I AGGCCT 1 cut(s) 377
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 783
Eco81I CCTNAGG 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 687
ErhI CCWWGG 1 cut(s) 687
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 2 cut(s) 103, 586
FaiI YATR 5 cut(s) 14, 101, 158, 584, 632
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FatI CATG 2 cut(s) 99, 582
FbaI TGATCA 3 cut(s) 102, 742, 882
Fnu4HI GCNGC 6 cut(s) 72, 84, 87, 137, 246, 473
FokI GGATG 4 cut(s) 30, 35, 91, 631
Fsp4HI GCNGC 6 cut(s) 72, 84, 87, 137, 246, 473
GlaI GCGC 1 cut(s) 175
GluI GCNGC 6 cut(s) 72, 84, 87, 137, 246, 473
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 3 cut(s) 83, 136, 377
HapII CCGG 3 cut(s) 47, 170, 704
HhaI GCGC 1 cut(s) 176
Hin1II CATG 2 cut(s) 103, 586
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 3 cut(s) 40, 545, 608
HpaII CCGG 3 cut(s) 47, 170, 704
Hpy188I TCNGA 7 cut(s) 396, 444, 463, 747, 759, 892, 926
Hpy188III TCNNGA 3 cut(s) 809, 851, 896
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 367, 796
HpyCH4III ACNGT 2 cut(s) 301, 773
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 2 cut(s) 416, 803
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 95, 242
HpyF3I CTNAG 3 cut(s) 379, 441, 462
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 103, 586
HspAI GCGC 1 cut(s) 174
Ksp22I TGATCA 3 cut(s) 102, 742, 882
Kzo9I GATC 9 cut(s) 102, 627, 742, 793, 811, 847, 868, 882, 892
LmnI GCTCC 1 cut(s) 329
Lsp1109I GCAGC 4 cut(s) 58, 98, 257, 459
LweI GCATC 2 cut(s) 498, 673
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 60
MalI GATC 9 cut(s) 104, 629, 744, 795, 813, 849, 870, 884, 894
MboI GATC 9 cut(s) 102, 627, 742, 793, 811, 847, 868, 882, 892
MluCI AATT 6 cut(s) 403, 481, 612, 753, 804, 902
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 4 cut(s) 145, 301, 372, 841
MseI TTAA 3 cut(s) 339, 768, 905
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 3 cut(s) 47, 170, 704
MspR9I CCNGG 3 cut(s) 171, 366, 704
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 80, 95, 242
NciI CCSGG 2 cut(s) 171, 704
NdeII GATC 9 cut(s) 102, 627, 742, 793, 811, 847, 868, 882, 892
NlaIII CATG 2 cut(s) 103, 586
NmuCI GTSAC 1 cut(s) 60
PceI AGGCCT 1 cut(s) 377
PcsI WCGNNNNNNNCGW 1 cut(s) 593
PctI GAATGC 1 cut(s) 418
PfeI GAWTC 2 cut(s) 40, 608
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 6 cut(s) 73, 85, 88, 138, 247, 474
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
PshBI ATTAAT 1 cut(s) 905
Psp6I CCWGG 1 cut(s) 364
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 364
PspPI GGNCC 1 cut(s) 783
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 3 cut(s) 339, 768, 905
SatI GCNGC 6 cut(s) 72, 84, 87, 137, 246, 473
Sau3AI GATC 9 cut(s) 102, 627, 742, 793, 811, 847, 868, 882, 892
Sau96I GGNCC 1 cut(s) 783
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 3 cut(s) 171, 366, 704
SetI ASST 7 cut(s) 36, 91, 112, 208, 394, 498, 509
SfaNI GCATC 2 cut(s) 498, 673
SinI GGWCC 1 cut(s) 783
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 6 cut(s) 403, 481, 612, 753, 804, 902
SseBI AGGCCT 1 cut(s) 377
SsiI CCGC 3 cut(s) 84, 137, 750
StuI AGGCCT 1 cut(s) 377
StyD4I CCNGG 3 cut(s) 169, 364, 702
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 2 cut(s) 301, 773
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 266, 479
TasI AATT 6 cut(s) 403, 481, 612, 753, 804, 902
TauI GCSGC 2 cut(s) 86, 139
TfiI GAWTC 2 cut(s) 40, 608
Tru1I TTAA 3 cut(s) 339, 768, 905
Tru9I TTAA 3 cut(s) 339, 768, 905
TseFI GTSAC 1 cut(s) 60
TseI GCWGC 4 cut(s) 71, 86, 245, 472
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 5 cut(s) 32, 39, 336, 635, 778
TspGWI ACGGA 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 783
VspI ATTAAT 1 cut(s) 905
XapI RAATTY 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.