Rh6CG516900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016765
Physical Location & Seq
Reverse (-)
67426101 .. 67427416
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG516900.1

Sequence Viewer

Length: 936 bp
ATGGGAAGAAGCATACCCACGGATGAAGCCGACCTGCTGATTCATCCGGTGTTTCCATTGTCACTCTTTGCTGCTGGGATGGCCGCAGCTACCATTGCCATGATCACAGCTCTTTGTAGTTTTAGACGAAAAAGGCCGCGTAATGTTGATGAGGATATGCTACAATCTCCGGGCGCAACAAAGACGAAAGAGGAAGCACTACAACCTGATGACGTGAAAACAACAGAAGAACCAGCAGAACAAGCGGCAGCAGCAGCAACAACAACAGCAATGTCGAACGAGACCACAGCACCCCAAGAACCCGAAACAGTAGATGAGGAAAAGGAAAATGAAGATGGAGCAGATTTTAAAACAAAAGAACTCCCACTTCCTCCAGGAAAGAAGGCCTTAGGGTTAGAAGCTCGGACGACTAATTGTTGGAATGCAAGCAATGTCAATACGACAACATCTCAGATAAAGAAATCGGCTTCTGAAAGACGGCTGCTGTCGAATTTGAGCATCAAGCTACCGAGAAGCTTGTCAATGGCGAAAAGGGGAGAGAAAAGTAAGGACGAGTCTAATAACAAACGAAAGAACGGGAGAAAGTTGTCCATGTCGTCAATGACGAAACAGGAAGAATCGATTTGGATGAAGACGATCATATTAGGGGAGAAATGTAAAGTGCCAGAAGAAGATGACATTGTGATTTACGATTCCAAGGGAAGAAAAATCCCGGCTTACCACCCGAAAAGTAGGCAAAACTCCTTTATTGATCAGACCGCAATTCCGAACCAGTTTAACAGTAGGCAATGGTCCTTCATTGATCCAAGTGCAATTCCAGATCAAAGAAGAAGCAATGCCACAAATGTAGAAATAGATCAAAACAAAAAAGATGGAGATCATCAAAAAATGATCAGTTCGGATCACGAAGAATTAATGTCCTTGTCTCAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

34.61

Weight (kDa)

6.19

Isoelectric Point (pI)

60.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016765)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31620
malus_domestica MD15G1056900.v1.1
prunus_persica Prupe.1G409500_v2.0.a1
pyrus_communis pycom08g05300 pycom15g05330
rosa_chinensis RchiOBHm_Chr6g0311201
rosa_laevigata RLG00000010428
rosa_multiflora Rmu_co8149324.1_g000001
rosa_roxburghii Rroxscaffold_7G00157910
rosa_rugosa Rorug06G0386300
rosa_samantha Rh6AG500500 Rh6BG511100 Rh6CG516900 Rh6DG503400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccII CGCG 1 cut(s) 139
AciI CCGC 4 cut(s) 84, 137, 245, 759
AclWI GGATC 2 cut(s) 797, 909
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 490
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 5 cut(s) 89, 110, 401, 505, 516
AluI AGCT 5 cut(s) 89, 110, 401, 505, 516
Alw26I GTCTC 2 cut(s) 275, 930
AlwI GGATC 2 cut(s) 797, 909
AoxI GGCC 3 cut(s) 81, 134, 384
ApeKI GCWGC 6 cut(s) 71, 86, 248, 251, 254, 481
ApoI RAATTY 1 cut(s) 490
AseI ATTAAT 1 cut(s) 914
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 792
AsuC2I CCSGG 2 cut(s) 171, 713
AvaII GGWCC 1 cut(s) 792
AxyI CCTNAGG 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 638
BbvI GCAGC 6 cut(s) 58, 98, 260, 263, 266, 468
BccI CCATC 3 cut(s) 73, 329, 866
BceAI ACGGC 1 cut(s) 494
BciT130I CCWGG 1 cut(s) 375
BclI TGATCA 3 cut(s) 102, 751, 891
BcnI CCSGG 2 cut(s) 171, 713
BcoDI GTCTC 2 cut(s) 275, 930
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 9 cut(s) 72, 84, 87, 137, 246, 249, 252, 255, 482
BlsI GCNGC 9 cut(s) 73, 85, 88, 138, 247, 250, 253, 256, 483
Bme1390I CCNGG 3 cut(s) 171, 375, 713
Bme18I GGWCC 1 cut(s) 792
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 792
BmrFI CCNGG 3 cut(s) 171, 375, 713
BmsI GCATC 1 cut(s) 507
BpiI GAAGAC 1 cut(s) 638
BpmI CTGGAG 1 cut(s) 357
BpuMI CCSGG 2 cut(s) 171, 713
Bsa29I ATCGAT 1 cut(s) 620
BsaBI GATNNNNATC 1 cut(s) 876
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 18, 696
BsaWI WCCGGW 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 772
Bse21I CCTNAGG 1 cut(s) 388
Bse3DI GCAATG 5 cut(s) 93, 276, 436, 794, 841
Bse8I GATNNNNATC 1 cut(s) 876
BseBI CCWGG 1 cut(s) 375
BseCI ATCGAT 1 cut(s) 620
BseDI CCNNGG 2 cut(s) 18, 696
BseGI GGATG 4 cut(s) 28, 43, 84, 633
BseJI GATNNNNATC 1 cut(s) 876
BseMI GCAATG 5 cut(s) 93, 276, 436, 794, 841
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 1 cut(s) 772
BseXI GCAGC 6 cut(s) 58, 98, 260, 263, 266, 468
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 83, 136, 386
BshVI ATCGAT 1 cut(s) 620
BsiSI CCGG 3 cut(s) 47, 170, 713
BsmAI GTCTC 2 cut(s) 275, 930
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 3 cut(s) 83, 136, 386
Bso31I GGTCTC 1 cut(s) 275
Bsp143I GATC 9 cut(s) 102, 636, 751, 802, 820, 856, 877, 891, 901
BspACI CCGC 4 cut(s) 84, 137, 245, 759
BspANI GGCC 3 cut(s) 83, 136, 386
BspCNI CTCAG 1 cut(s) 463
BspDI ATCGAT 1 cut(s) 620
BspFNI CGCG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 2 cut(s) 797, 909
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 5 cut(s) 93, 276, 436, 794, 841
BsrI ACTGG 1 cut(s) 772
BssECI CCNNGG 2 cut(s) 18, 696
BssMI GATC 9 cut(s) 102, 636, 751, 802, 820, 856, 877, 891, 901
BssT1I CCWWGG 1 cut(s) 696
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 2 cut(s) 310, 782
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 2 cut(s) 388, 450
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 4 cut(s) 28, 43, 84, 633
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 9 cut(s) 105, 639, 754, 805, 823, 859, 880, 894, 904
BstMAI GTCTC 2 cut(s) 275, 930
BstMBI GATC 9 cut(s) 102, 636, 751, 802, 820, 856, 877, 891, 901
BstMWI GCNNNNNNNGC 5 cut(s) 80, 95, 242, 251, 254
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 3 cut(s) 169, 373, 711
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 6 cut(s) 58, 98, 260, 263, 266, 468
BstV2I GAAGAC 1 cut(s) 638
Bsu15I ATCGAT 1 cut(s) 620
Bsu36I CCTNAGG 1 cut(s) 388
BsuRI GGCC 3 cut(s) 83, 136, 386
BsuTUI ATCGAT 1 cut(s) 620
BtgI CCRYGG 1 cut(s) 18
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 4 cut(s) 28, 43, 84, 633
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 427
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 792
ClaI ATCGAT 1 cut(s) 620
CviAII CATG 2 cut(s) 100, 592
DdeI CTNAG 2 cut(s) 388, 450
DpnI GATC 9 cut(s) 104, 638, 753, 804, 822, 858, 879, 893, 903
DpnII GATC 9 cut(s) 102, 636, 751, 802, 820, 856, 877, 891, 901
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 696
Eco147I AGGCCT 1 cut(s) 386
Eco31I GGTCTC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 792
Eco81I CCTNAGG 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 696
FaeI CATG 2 cut(s) 103, 595
FaiI YATR 5 cut(s) 14, 101, 158, 593, 641
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 2 cut(s) 99, 591
FbaI TGATCA 3 cut(s) 102, 751, 891
Fnu4HI GCNGC 9 cut(s) 72, 84, 87, 137, 246, 249, 252, 255, 482
FokI GGATG 4 cut(s) 30, 35, 91, 640
Fsp4HI GCNGC 9 cut(s) 72, 84, 87, 137, 246, 249, 252, 255, 482
GlaI GCGC 1 cut(s) 175
GluI GCNGC 9 cut(s) 72, 84, 87, 137, 246, 249, 252, 255, 482
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 3 cut(s) 83, 136, 386
HapII CCGG 3 cut(s) 47, 170, 713
HhaI GCGC 1 cut(s) 176
Hin1II CATG 2 cut(s) 103, 595
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 514
HinfI GANTC 4 cut(s) 40, 554, 617, 692
HpaII CCGG 3 cut(s) 47, 170, 713
Hpy188I TCNGA 7 cut(s) 405, 453, 472, 756, 768, 901, 935
Hpy188III TCNNGA 2 cut(s) 818, 905
HpyAV CCTTC 2 cut(s) 376, 805
HpyCH4III ACNGT 2 cut(s) 310, 782
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 425, 812
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 95, 242, 251, 254
HpyF3I CTNAG 2 cut(s) 388, 450
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 2 cut(s) 103, 595
HspAI GCGC 1 cut(s) 174
Ksp22I TGATCA 3 cut(s) 102, 751, 891
Kzo9I GATC 9 cut(s) 102, 636, 751, 802, 820, 856, 877, 891, 901
LmnI GCTCC 1 cut(s) 338
Lsp1109I GCAGC 6 cut(s) 58, 98, 260, 263, 266, 468
LweI GCATC 1 cut(s) 507
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 60
MalI GATC 9 cut(s) 104, 638, 753, 804, 822, 858, 879, 893, 903
MboI GATC 9 cut(s) 102, 636, 751, 802, 820, 856, 877, 891, 901
MluCI AATT 5 cut(s) 412, 490, 762, 813, 911
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 398
MnlI CCTC 4 cut(s) 145, 184, 310, 381
MseI TTAA 3 cut(s) 348, 777, 914
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 3 cut(s) 47, 170, 713
MspR9I CCNGG 3 cut(s) 171, 375, 713
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 5 cut(s) 80, 95, 242, 251, 254
NciI CCSGG 2 cut(s) 171, 713
NdeII GATC 9 cut(s) 102, 636, 751, 802, 820, 856, 877, 891, 901
NlaIII CATG 2 cut(s) 103, 595
NmuCI GTSAC 1 cut(s) 60
PceI AGGCCT 1 cut(s) 386
PcsI WCGNNNNNNNCGW 1 cut(s) 602
PctI GAATGC 1 cut(s) 427
PfeI GAWTC 3 cut(s) 40, 617, 692
PfoI TCCNGGA 1 cut(s) 373
PkrI GCNGC 9 cut(s) 73, 85, 88, 138, 247, 250, 253, 256, 483
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PshBI ATTAAT 1 cut(s) 914
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 373
PspPI GGNCC 1 cut(s) 792
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 3 cut(s) 348, 777, 914
SatI GCNGC 9 cut(s) 72, 84, 87, 137, 246, 249, 252, 255, 482
Sau3AI GATC 9 cut(s) 102, 636, 751, 802, 820, 856, 877, 891, 901
Sau96I GGNCC 1 cut(s) 792
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 3 cut(s) 171, 375, 713
SetI ASST 8 cut(s) 36, 91, 112, 208, 216, 403, 507, 518
SfaNI GCATC 1 cut(s) 507
SinI GGWCC 1 cut(s) 792
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 5 cut(s) 412, 490, 762, 813, 911
SseBI AGGCCT 1 cut(s) 386
SsiI CCGC 4 cut(s) 84, 137, 245, 759
StuI AGGCCT 1 cut(s) 386
StyD4I CCNGG 3 cut(s) 169, 373, 711
StyI CCWWGG 1 cut(s) 696
TaaI ACNGT 2 cut(s) 310, 782
TaiI ACGT 1 cut(s) 216
TaqI TCGA 3 cut(s) 275, 488, 620
TasI AATT 5 cut(s) 412, 490, 762, 813, 911
TauI GCSGC 3 cut(s) 86, 139, 248
TfiI GAWTC 3 cut(s) 40, 617, 692
Tru1I TTAA 3 cut(s) 348, 777, 914
Tru9I TTAA 3 cut(s) 348, 777, 914
TseFI GTSAC 1 cut(s) 60
TseI GCWGC 6 cut(s) 71, 86, 248, 251, 254, 481
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 5 cut(s) 32, 39, 345, 644, 787
TspGWI ACGGA 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 792
VspI ATTAAT 1 cut(s) 914
XapI RAATTY 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.