Prupe.1G409500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016765
Physical Location & Seq
Forward (+)
35825017 .. 35826314
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G409500.1

Sequence Viewer

Length: 732 bp
ATGGGAAGAAGAATTCCCGCGGATGAGACAAACCTGCTAATTCATCCGTTGCTTTCGATATCATTTTTTGCTGCTGGTATGGCTGCCACCATTGCCATGATCACAGCTCTTTGTAGCTTTAGAAGAAAACGATCACCGCCTCCTTCTCAATCCCCTGCTTCCAACACAACGGAAACAGATGCAGAACCAGCAACAATGGCAGCTGCGGGGACAACGACAACAACACCTCAGCAAGATTCAGAAACAGATCAAGAAAACGAGGATGGAAGAGAGAGTAAAGAACTGCCTTTGCCTCCGCGGATGAGGCACTCAGGGCAGATTGATTCTACCGTTAACAACAAGACACATATCAAAAAGTCTGCTTCTGAGAGAAGACTGTTGTCGAATTTAAGCATGAAATTGCCAAGAAGCTTGTCAATGGCAAGGAAAGATAAGGTGAAGGAGGAGTATAACAAACGAAAGAACGCCAAGTTGAAGCCGGAAGAGTCCATCTGGATGAAGACGATCATATTAGGTGAGAAATGTAAAGTGCCAGATGAGGACGAACTTGCGATTTATGATGCTAAGGGAAGAAAGATTCCGGCATATCGCCCCAAAAGTAGGCAATCTTCTTTCATTGATCCAAGCGCCATACCGGACCAAAGAATGAGAAAAGTAGAGATAGAAAACAAAATTAATCAAGAGAGAGATCACAAACAAGAAAACAAAAATGAAGAAAGTGATCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

27.46

Weight (kDa)

9.1

Isoelectric Point (pI)

70.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016765)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31620
malus_domestica MD15G1056900.v1.1
prunus_persica Prupe.1G409500_v2.0.a1
pyrus_communis pycom08g05300 pycom15g05330
rosa_chinensis RchiOBHm_Chr6g0311201
rosa_laevigata RLG00000010428
rosa_multiflora Rmu_co8149324.1_g000001
rosa_roxburghii Rroxscaffold_7G00157910
rosa_rugosa Rorug06G0386300
rosa_samantha Rh6AG500500 Rh6BG511100 Rh6CG516900 Rh6DG503400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccII CGCG 2 cut(s) 20, 298
AciI CCGC 6 cut(s) 18, 20, 137, 206, 296, 298
AclWI GGATC 1 cut(s) 614
AcsI RAATTY 2 cut(s) 12, 385
AfiI CCNNNNNNNGG 1 cut(s) 600
AgsI TTSAA 1 cut(s) 475
AluBI AGCT 4 cut(s) 107, 117, 203, 411
AluI AGCT 4 cut(s) 107, 117, 203, 411
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 1 cut(s) 614
ApeKI GCWGC 4 cut(s) 71, 83, 200, 203
ApoI RAATTY 2 cut(s) 12, 385
AseI ATTAAT 1 cut(s) 675
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 637
AsuHPI GGTGA 3 cut(s) 126, 448, 527
AvaII GGWCC 1 cut(s) 637
BarI GAAGNNNNNNTAC 2 cut(s) 592, 624
BbsI GAAGAC 2 cut(s) 379, 506
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 4 cut(s) 58, 70, 190, 212
BccI CCATC 2 cut(s) 257, 497
BclI TGATCA 2 cut(s) 99, 721
BcoDI GTCTC 1 cut(s) 20
BfoI RGCGCY 1 cut(s) 630
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 4 cut(s) 72, 84, 201, 204
BlsI GCNGC 4 cut(s) 73, 85, 202, 205
Bme18I GGWCC 1 cut(s) 637
BmgT120I GGNCC 1 cut(s) 637
BmsI GCATC 2 cut(s) 169, 550
BoxI GACNNNNGTC 1 cut(s) 379
BpiI GAAGAC 2 cut(s) 379, 506
Bpu10I CCTNAGC 2 cut(s) 228, 564
BsaJI CCNNGG 2 cut(s) 18, 296
BsaWI WCCGGW 1 cut(s) 634
Bsc4I CCNNNNNNNGG 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 18, 296
BseGI GGATG 5 cut(s) 28, 43, 268, 306, 501
BseLI CCNNNNNNNGG 1 cut(s) 600
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 3 cut(s) 242, 324, 357
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 4 cut(s) 58, 70, 190, 212
Bsh1236I CGCG 2 cut(s) 20, 298
BsiSI CCGG 3 cut(s) 479, 581, 635
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 600
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 223
Bsp143I GATC 7 cut(s) 99, 131, 247, 504, 619, 688, 721
BspACI CCGC 6 cut(s) 18, 20, 137, 206, 296, 298
BspCNI CTCAG 3 cut(s) 241, 323, 358
BspFNI CGCG 2 cut(s) 20, 298
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 18, 296
BssMI GATC 7 cut(s) 99, 131, 247, 504, 619, 688, 721
Bst4CI ACNGT 2 cut(s) 331, 378
Bst6I CTCTTC 2 cut(s) 262, 477
BstDEI CTNAG 4 cut(s) 228, 310, 366, 564
BstDSI CCRYGG 2 cut(s) 18, 296
BstF5I GGATG 5 cut(s) 28, 43, 268, 306, 501
BstFNI CGCG 2 cut(s) 20, 298
BstH2I RGCGCY 1 cut(s) 630
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 7 cut(s) 102, 134, 250, 507, 622, 691, 724
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 7 cut(s) 99, 131, 247, 504, 619, 688, 721
BstMWI GCNNNNNNNGC 6 cut(s) 80, 92, 188, 197, 304, 313
BstPAI GACNNNNGTC 1 cut(s) 379
BstUI CGCG 2 cut(s) 20, 298
BstV1I GCAGC 4 cut(s) 58, 70, 190, 212
BstV2I GAAGAC 2 cut(s) 379, 506
BtgI CCRYGG 2 cut(s) 18, 296
BtsCI GGATG 5 cut(s) 28, 43, 268, 306, 501
BveI ACCTGC 1 cut(s) 42
CfoI GCGC 1 cut(s) 629
Cfr13I GGNCC 1 cut(s) 637
Cfr42I CCGCGG 2 cut(s) 21, 299
CviAII CATG 2 cut(s) 97, 394
CviJI RGCY 6 cut(s) 83, 107, 117, 203, 411, 478
CviKI_1 RGCY 6 cut(s) 83, 107, 117, 203, 411, 478
DdeI CTNAG 4 cut(s) 228, 310, 366, 564
DpnI GATC 7 cut(s) 101, 133, 249, 506, 621, 690, 723
DpnII GATC 7 cut(s) 99, 131, 247, 504, 619, 688, 721
Eam1104I CTCTTC 2 cut(s) 262, 477
EarI CTCTTC 2 cut(s) 262, 477
Eco32I GATATC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 637
EcoRI GAATTC 1 cut(s) 12
EcoRV GATATC 1 cut(s) 60
FaeI CATG 2 cut(s) 100, 397
FaiI YATR 9 cut(s) 80, 98, 348, 395, 450, 509, 558, 586, 632
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 96, 393
FauI CCCGC 2 cut(s) 25, 199
FbaI TGATCA 2 cut(s) 99, 721
Fnu4HI GCNGC 4 cut(s) 72, 84, 201, 204
FokI GGATG 5 cut(s) 30, 35, 275, 313, 508
Fsp4HI GCNGC 4 cut(s) 72, 84, 201, 204
GlaI GCGC 1 cut(s) 628
GluI GCNGC 4 cut(s) 72, 84, 201, 204
HaeII RGCGCY 1 cut(s) 630
HapII CCGG 3 cut(s) 479, 581, 635
HhaI GCGC 1 cut(s) 629
Hin1II CATG 2 cut(s) 100, 397
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 4 cut(s) 236, 323, 485, 577
HpaI GTTAAC 1 cut(s) 334
HpaII CCGG 3 cut(s) 479, 581, 635
HphI GGTGA 3 cut(s) 126, 448, 527
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 241, 367
Hpy188III TCNNGA 4 cut(s) 251, 493, 680, 725
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 2 cut(s) 153, 433
HpyCH4III ACNGT 2 cut(s) 331, 378
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 92, 188, 197, 304, 313
HpyF3I CTNAG 4 cut(s) 228, 310, 366, 564
Hsp92II CATG 2 cut(s) 100, 397
HspAI GCGC 1 cut(s) 627
Ksp22I TGATCA 2 cut(s) 99, 721
KspAI GTTAAC 1 cut(s) 334
KspI CCGCGG 2 cut(s) 21, 299
Kzo9I GATC 7 cut(s) 99, 131, 247, 504, 619, 688, 721
Lsp1109I GCAGC 4 cut(s) 58, 70, 190, 212
LweI GCATC 2 cut(s) 169, 550
MalI GATC 7 cut(s) 101, 133, 249, 506, 621, 690, 723
MboI GATC 7 cut(s) 99, 131, 247, 504, 619, 688, 721
MluCI AATT 5 cut(s) 12, 39, 385, 398, 672
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 7 cut(s) 150, 237, 253, 297, 303, 436, 532
MseI TTAA 3 cut(s) 333, 389, 675
MslI CAYNNNNRTG 2 cut(s) 95, 494
MspA1I CMGCKG 3 cut(s) 20, 203, 298
MspI CCGG 3 cut(s) 479, 581, 635
MvnI CGCG 2 cut(s) 20, 298
MwoI GCNNNNNNNGC 6 cut(s) 80, 92, 188, 197, 304, 313
NdeII GATC 7 cut(s) 99, 131, 247, 504, 619, 688, 721
NlaIII CATG 2 cut(s) 100, 397
PfeI GAWTC 3 cut(s) 236, 323, 577
PkrI GCNGC 4 cut(s) 73, 85, 202, 205
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PshAI GACNNNNGTC 1 cut(s) 379
PshBI ATTAAT 1 cut(s) 675
PspPI GGNCC 1 cut(s) 637
PvuII CAGCTG 1 cut(s) 203
RseI CAYNNNNRTG 2 cut(s) 95, 494
SacII CCGCGG 2 cut(s) 21, 299
SaqAI TTAA 3 cut(s) 333, 389, 675
SatI GCNGC 4 cut(s) 72, 84, 201, 204
Sau3AI GATC 7 cut(s) 99, 131, 247, 504, 619, 688, 721
Sau96I GGNCC 1 cut(s) 637
SchI GAGTC 1 cut(s) 494
SetI ASST 8 cut(s) 36, 109, 119, 205, 229, 413, 438, 517
SfaNI GCATC 2 cut(s) 169, 550
Sfr303I CCGCGG 2 cut(s) 21, 299
SgrBI CCGCGG 2 cut(s) 21, 299
SinI GGWCC 1 cut(s) 637
SmiMI CAYNNNNRTG 2 cut(s) 95, 494
Sse9I AATT 5 cut(s) 12, 39, 385, 398, 672
SsiI CCGC 6 cut(s) 18, 20, 137, 206, 296, 298
TaaI ACNGT 2 cut(s) 331, 378
TaqI TCGA 2 cut(s) 56, 383
TasI AATT 5 cut(s) 12, 39, 385, 398, 672
TfiI GAWTC 3 cut(s) 236, 323, 577
Tru1I TTAA 3 cut(s) 333, 389, 675
Tru9I TTAA 3 cut(s) 333, 389, 675
TseI GCWGC 4 cut(s) 71, 83, 200, 203
TspDTI ATGAA 5 cut(s) 32, 410, 512, 604, 726
TspGWI ACGGA 2 cut(s) 36, 185
VpaK11BI GGWCC 1 cut(s) 637
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 2 cut(s) 12, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.