Rh6AG500500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016765
Physical Location & Seq
Reverse (-)
67512247 .. 67513818
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG500500.1

Sequence Viewer

Length: 939 bp
ATGGGAAGAAGCATACCCACGGATGAAGCCGACCTGCTGATTCATCCGGTGTTTCCATTGTCACTCTTTGCTGCTGGGATGGCCGCAGCTACCATTGCCATGATCACAGCTCTTTGTAGTTTTAGACGAAAAAGGCCGCGTAATGTTGATGAGGATATGCTACAATCTCCGGGCGCAACAAAGACGAAAGAGGAAGCACTACAACCTGATGATGTGAAAACAACAGAAGAACCAGCAGAACAAGCAGCAGCAGCAGCAACAACAACAACAGCAATGTCGAACGAGACCACAGCACCCCAAGAACCCGAAACAGTAGATGAGGAAAAGGAAAATGAAGATGGAGCAGATTTTAAAACAAAAGAACTCCCACTTCCTCCAGGAAAGAAGGCCTTAGGGTTAGAAGCTCGGACGACTAATTGTTGGAATGCAAGCAATGTCAATACGACAACATCTCAGATAAAGAAATCGGCTTCTGAAAGACGGCTGCTGTCGAATTTGAGCATCAAGCTACCGAGAAGCTTGTCAATGGCGAAAAGGGGAGAGAAAAGTAAGGACGAGTCTAATAACAAACGAAAGAACGGGAGAAAGTTGTCCATGTCGTCAATCACGAAACAGGAAGAATCGATTTGGATGAAGACGATCATATTAGGGGAGAAATGTAAAGTGCCAGAAGAAGATGACATTGTGATTTACGATGCCAAGGGAAGAAAAATCCCGGCATACCACCCGAAAAGTAGGCAAAACTCCCTTATTGATCAGACAGCAATTCCGAACCAGTTTAACAGTAGGCAATGGTCCTTCATTGATCCAAGTGCAATTCCAGATCAAGGAAGAAGCAATGCCACAAATGTAGAAATAGATCAAAACAAAAAAGATGGAGATCATCAAAAAATGATCAGTTCGGATCATGAAGAATTAATGTCCTTGTCTCAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

34.54

Weight (kDa)

5.96

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016765)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31620
malus_domestica MD15G1056900.v1.1
prunus_persica Prupe.1G409500_v2.0.a1
pyrus_communis pycom08g05300 pycom15g05330
rosa_chinensis RchiOBHm_Chr6g0311201
rosa_laevigata RLG00000010428
rosa_multiflora Rmu_co8149324.1_g000001
rosa_roxburghii Rroxscaffold_7G00157910
rosa_rugosa Rorug06G0386300
rosa_samantha Rh6AG500500 Rh6BG511100 Rh6CG516900 Rh6DG503400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccII CGCG 1 cut(s) 139
AciI CCGC 2 cut(s) 84, 137
AclWI GGATC 2 cut(s) 800, 912
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 493
AfiI CCNNNNNNNGG 1 cut(s) 827
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 5 cut(s) 89, 110, 404, 508, 519
AluI AGCT 5 cut(s) 89, 110, 404, 508, 519
Alw26I GTCTC 2 cut(s) 278, 933
AlwI GGATC 2 cut(s) 800, 912
AoxI GGCC 3 cut(s) 81, 134, 387
ApeKI GCWGC 7 cut(s) 71, 86, 245, 248, 251, 254, 484
ApoI RAATTY 1 cut(s) 493
AseI ATTAAT 1 cut(s) 917
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 795
AsuC2I CCSGG 2 cut(s) 171, 716
AvaII GGWCC 1 cut(s) 795
AxyI CCTNAGG 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 641
BbvI GCAGC 7 cut(s) 58, 98, 257, 260, 263, 266, 471
BccI CCATC 3 cut(s) 73, 332, 869
BceAI ACGGC 1 cut(s) 497
BciT130I CCWGG 1 cut(s) 378
BclI TGATCA 3 cut(s) 102, 754, 894
BcnI CCSGG 2 cut(s) 171, 716
BcoDI GTCTC 2 cut(s) 278, 933
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 9 cut(s) 72, 84, 87, 137, 246, 249, 252, 255, 485
BlsI GCNGC 9 cut(s) 73, 85, 88, 138, 247, 250, 253, 256, 486
Bme1390I CCNGG 3 cut(s) 171, 378, 716
Bme18I GGWCC 1 cut(s) 795
BmgT120I GGNCC 1 cut(s) 795
BmrFI CCNGG 3 cut(s) 171, 378, 716
BmsI GCATC 2 cut(s) 510, 685
BpiI GAAGAC 1 cut(s) 641
BpmI CTGGAG 1 cut(s) 360
BpuMI CCSGG 2 cut(s) 171, 716
Bsa29I ATCGAT 1 cut(s) 623
BsaBI GATNNNNATC 1 cut(s) 879
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 18, 699
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 827
Bse1I ACTGG 1 cut(s) 775
Bse21I CCTNAGG 1 cut(s) 391
Bse3DI GCAATG 5 cut(s) 93, 279, 439, 797, 844
Bse8I GATNNNNATC 1 cut(s) 879
BseBI CCWGG 1 cut(s) 378
BseCI ATCGAT 1 cut(s) 623
BseDI CCNNGG 2 cut(s) 18, 699
BseGI GGATG 4 cut(s) 28, 43, 84, 636
BseJI GATNNNNATC 1 cut(s) 879
BseLI CCNNNNNNNGG 1 cut(s) 827
BseMI GCAATG 5 cut(s) 93, 279, 439, 797, 844
BseMII CTCAG 1 cut(s) 467
BseNI ACTGG 1 cut(s) 775
BseXI GCAGC 7 cut(s) 58, 98, 257, 260, 263, 266, 471
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 83, 136, 389
BshVI ATCGAT 1 cut(s) 623
BsiSI CCGG 3 cut(s) 47, 170, 716
BslI CCNNNNNNNGG 1 cut(s) 827
BsmAI GTCTC 2 cut(s) 278, 933
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 3 cut(s) 83, 136, 389
Bso31I GGTCTC 1 cut(s) 278
Bsp143I GATC 9 cut(s) 102, 639, 754, 805, 823, 859, 880, 894, 904
BspACI CCGC 2 cut(s) 84, 137
BspANI GGCC 3 cut(s) 83, 136, 389
BspCNI CTCAG 1 cut(s) 466
BspDI ATCGAT 1 cut(s) 623
BspFNI CGCG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 907
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 2 cut(s) 800, 912
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 5 cut(s) 93, 279, 439, 797, 844
BsrI ACTGG 1 cut(s) 775
BssECI CCNNGG 2 cut(s) 18, 699
BssMI GATC 9 cut(s) 102, 639, 754, 805, 823, 859, 880, 894, 904
BssT1I CCWWGG 1 cut(s) 699
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 313, 785
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 2 cut(s) 391, 453
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 4 cut(s) 28, 43, 84, 636
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 9 cut(s) 105, 642, 757, 808, 826, 862, 883, 897, 907
BstMAI GTCTC 2 cut(s) 278, 933
BstMBI GATC 9 cut(s) 102, 639, 754, 805, 823, 859, 880, 894, 904
BstMWI GCNNNNNNNGC 5 cut(s) 80, 95, 242, 251, 254
BstNI CCWGG 1 cut(s) 378
BstSCI CCNGG 3 cut(s) 169, 376, 714
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 7 cut(s) 58, 98, 257, 260, 263, 266, 471
BstV2I GAAGAC 1 cut(s) 641
Bsu15I ATCGAT 1 cut(s) 623
Bsu36I CCTNAGG 1 cut(s) 391
BsuRI GGCC 3 cut(s) 83, 136, 389
BsuTUI ATCGAT 1 cut(s) 623
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 4 cut(s) 28, 43, 84, 636
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 430
CciI TCATGA 1 cut(s) 907
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 795
ClaI ATCGAT 1 cut(s) 623
CviAII CATG 3 cut(s) 100, 595, 908
DdeI CTNAG 2 cut(s) 391, 453
DpnI GATC 9 cut(s) 104, 641, 756, 807, 825, 861, 882, 896, 906
DpnII GATC 9 cut(s) 102, 639, 754, 805, 823, 859, 880, 894, 904
DraI TTTAAA 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 699
Eco147I AGGCCT 1 cut(s) 389
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 795
Eco81I CCTNAGG 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 699
FaeI CATG 3 cut(s) 103, 598, 911
FaiI YATR 7 cut(s) 14, 101, 158, 596, 644, 721, 909
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FatI CATG 3 cut(s) 99, 594, 907
FbaI TGATCA 3 cut(s) 102, 754, 894
Fnu4HI GCNGC 9 cut(s) 72, 84, 87, 137, 246, 249, 252, 255, 485
FokI GGATG 4 cut(s) 30, 35, 91, 643
Fsp4HI GCNGC 9 cut(s) 72, 84, 87, 137, 246, 249, 252, 255, 485
GlaI GCGC 1 cut(s) 175
GluI GCNGC 9 cut(s) 72, 84, 87, 137, 246, 249, 252, 255, 485
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 3 cut(s) 83, 136, 389
HapII CCGG 3 cut(s) 47, 170, 716
HhaI GCGC 1 cut(s) 176
Hin1II CATG 3 cut(s) 103, 598, 911
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 3 cut(s) 40, 557, 620
HpaII CCGG 3 cut(s) 47, 170, 716
Hpy188I TCNGA 7 cut(s) 408, 456, 475, 759, 771, 904, 938
Hpy188III TCNNGA 3 cut(s) 607, 821, 908
HpyAV CCTTC 2 cut(s) 379, 808
HpyCH4III ACNGT 2 cut(s) 313, 785
HpyCH4V TGCA 2 cut(s) 428, 815
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 95, 242, 251, 254
HpyF3I CTNAG 2 cut(s) 391, 453
Hsp92II CATG 3 cut(s) 103, 598, 911
HspAI GCGC 1 cut(s) 174
Ksp22I TGATCA 3 cut(s) 102, 754, 894
Kzo9I GATC 9 cut(s) 102, 639, 754, 805, 823, 859, 880, 894, 904
LmnI GCTCC 1 cut(s) 341
Lsp1109I GCAGC 7 cut(s) 58, 98, 257, 260, 263, 266, 471
LweI GCATC 2 cut(s) 510, 685
MaeIII GTNAC 1 cut(s) 60
MalI GATC 9 cut(s) 104, 641, 756, 807, 825, 861, 882, 896, 906
MboI GATC 9 cut(s) 102, 639, 754, 805, 823, 859, 880, 894, 904
MluCI AATT 5 cut(s) 415, 493, 765, 816, 914
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 4 cut(s) 145, 184, 313, 384
MseI TTAA 3 cut(s) 351, 780, 917
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 3 cut(s) 47, 170, 716
MspR9I CCNGG 3 cut(s) 171, 378, 716
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 1 cut(s) 378
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 5 cut(s) 80, 95, 242, 251, 254
NciI CCSGG 2 cut(s) 171, 716
NdeII GATC 9 cut(s) 102, 639, 754, 805, 823, 859, 880, 894, 904
NlaIII CATG 3 cut(s) 103, 598, 911
NmuCI GTSAC 1 cut(s) 60
PagI TCATGA 1 cut(s) 907
PceI AGGCCT 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 605
PctI GAATGC 1 cut(s) 430
PfeI GAWTC 2 cut(s) 40, 620
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 9 cut(s) 73, 85, 88, 138, 247, 250, 253, 256, 486
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
PshBI ATTAAT 1 cut(s) 917
Psp6I CCWGG 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 376
PspPI GGNCC 1 cut(s) 795
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 3 cut(s) 351, 780, 917
SatI GCNGC 9 cut(s) 72, 84, 87, 137, 246, 249, 252, 255, 485
Sau3AI GATC 9 cut(s) 102, 639, 754, 805, 823, 859, 880, 894, 904
Sau96I GGNCC 1 cut(s) 795
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 3 cut(s) 171, 378, 716
SetI ASST 7 cut(s) 36, 91, 112, 208, 406, 510, 521
SfaNI GCATC 2 cut(s) 510, 685
SinI GGWCC 1 cut(s) 795
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 5 cut(s) 415, 493, 765, 816, 914
SseBI AGGCCT 1 cut(s) 389
SsiI CCGC 2 cut(s) 84, 137
StuI AGGCCT 1 cut(s) 389
StyD4I CCNGG 3 cut(s) 169, 376, 714
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 2 cut(s) 313, 785
TaqI TCGA 3 cut(s) 278, 491, 623
TasI AATT 5 cut(s) 415, 493, 765, 816, 914
TauI GCSGC 2 cut(s) 86, 139
TfiI GAWTC 2 cut(s) 40, 620
Tru1I TTAA 3 cut(s) 351, 780, 917
Tru9I TTAA 3 cut(s) 351, 780, 917
TseFI GTSAC 1 cut(s) 60
TseI GCWGC 7 cut(s) 71, 86, 245, 248, 251, 254, 484
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 6 cut(s) 32, 39, 348, 647, 790, 924
TspGWI ACGGA 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 795
VspI ATTAAT 1 cut(s) 917
XapI RAATTY 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.