Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008081

Physical Location & Seq

Genomic Coordinates Reverse (-)

24455143 .. 24458349

Gene Structure 3207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32180.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAAGGAGAAGATAGCATATTAGATTCAATATATGATGATAACTTTGAGGATGATGGTGAGGATGTCGAAATGCTCGATGTCGAAGAAGGGGAGTTTGTGGTGCATGAATCACCAAACGGCTCGGTACAGGGGAGTGGTGGGAATGACAGTGGAGCAAATCAAGAGCATCAGAGCAAAGGTAGCAAGAATAAGAGGAAGAAGAGGAGAAACAGGAGAAAGAACAGCGGCGGCCCGAGGACTAATGCATTTGACTTAGACAGGTTTGTTTCGGAGACGTGTAGAAATTTGAAAGAGCATAAGTCGTATTTGGTATACACTGCTGTTGCTTGTCTTGGTGTTGCTGCATTGTGTGATCTCATCAAAGAGGTGAATGCAATCCAGGCATGTGGAGGTCAGATGACTGCTAATGGCAGACGTTTGCGGACAGGTGGTGGTCTGCTGTGGAATATTATCAAAGCACGAGAGCCAAAGGCCTATAAAGAGATCATGAAGAAAGCAAGGGAATTTGAGAAGCAATTCAAGCGACCATATAATATACAATCACCAACAAGCCAAAGTAAAGAAGAACCATCCCAAGTATTTGCCACTTCATCAGAGGATGGAACTCCAGCCAAATTTTTGAATGATTTGCAACATGTATCTGAAATGACTGAAATTCCTGAAATGCAGACTCAAGACAATCCTTCAAATCCCCGAAGAAAACATGTTTCTGTTCATGATAGGCTGAGGGTACCTGTGTCATATGATGATGACCTGCTAGCAGGGAAACCCAAAGATGATGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RNA_GG_bind

Protein Analysis

264

Amino Acids

29.45

Weight (kDa)

5.79

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHAX_RNA-bd	PF10258	101 - 181	1.5e-24	Phosphorylated adapter RNA export protein, RNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20430
fragaria_vesca	FvH4_2g32180 FvH4_2g32180 FvH4_2g32180
prunus_persica	Prupe.1G414900_v2.0.a1 Prupe.1G414900_v2.0.a1 Prupe.1G414900_v2.0.a1
pyrus_communis	pycom15g05780
rosa_chinensis	RchiOBHm_Chr6g0310491 RchiOBHm_Chr6g0310501
rosa_laevigata	RLG00000010478 RLG00000015866
rosa_multiflora	Rmu_co8215328.1_g000001 Rmu_sc0014388.1_g000001 Rmu_sc0016392.1_g000007 Rmu_sc0020729.1_g000004 Rmu_sc0035020.1_g000003
rosa_roxburghii	Rroxscaffold_7G00158480
rosa_rugosa	Rorug06G0380800
rosa_samantha	Rh6AG494900 Rh6BG504500 Rh6CG509800 Rh6DG495800
rosa_wichuraiana	Rw6G043040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	765
Acc65I	GGTACC	1 cut(s)	733
AccB1I	GGYRCC	1 cut(s)	733
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	3 cut(s)	228, 231, 424
AcsI	RAATTY	4 cut(s)	286, 506, 617, 657
AfaI	GTAC	2 cut(s)	129, 735
AflIII	ACRYGT	3 cut(s)	278, 637, 706
AgsI	TTSAA	5 cut(s)	30, 292, 523, 625, 690
AjiI	CACGTC	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	2 cut(s)	232, 474
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	4 cut(s)	286, 506, 617, 657
Asp700I	GAANNNNTTC	1 cut(s)	518
Asp718I	GGTACC	1 cut(s)	733
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	4 cut(s)	71, 105, 382, 537
AsuNHI	GCTAGC	1 cut(s)	760
AvaI	CYCGRG	1 cut(s)	235
BaeI	ACNNNNGTAYC	2 cut(s)	725, 758
BanI	GGYRCC	1 cut(s)	733
BauI	CACGAG	1 cut(s)	462
BbvCI	CCTCAGC	1 cut(s)	728
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	3 cut(s)	50, 580, 596
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	761
BfuAI	ACCTGC	1 cut(s)	765
BisI	GCNGC	3 cut(s)	229, 232, 345
BlsI	GCNGC	3 cut(s)	230, 233, 346
Bme1390I	CCNGG	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	735
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	178, 772
BmtI	GCTAGC	1 cut(s)	764
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	728
BpuEI	CTTGAG	1 cut(s)	660
BsaJI	CCNNGG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	4 cut(s)	58, 70, 572, 607
BseMII	CTCAG	1 cut(s)	719
BseRI	GAGGAG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	2 cut(s)	234, 476
BshNI	GGYRCC	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	269
BsmBI	CGTCTC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	234, 476
BsoBI	CYCGRG	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	355, 486
BspACI	CCGC	3 cut(s)	228, 231, 424
BspANI	GGCC	2 cut(s)	234, 476
BspCNI	CTCAG	1 cut(s)	720
BspHI	TCATGA	2 cut(s)	489, 718
BspLI	GGNNCC	1 cut(s)	735
BspMI	ACCTGC	1 cut(s)	765
BspOI	GCTAGC	1 cut(s)	764
BspT107I	GGYRCC	1 cut(s)	733
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	2 cut(s)	355, 486
BssNAI	GTATAC	1 cut(s)	316
BssSI	CACGAG	1 cut(s)	462
Bst1107I	GTATAC	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	2 cut(s)	256, 728
BstF5I	GGATG	4 cut(s)	58, 70, 572, 607
BstKTI	GATC	2 cut(s)	358, 489
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	355, 486
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 383, 523
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	3 cut(s)	390, 641, 710
BstSCI	CCNGG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstZ17I	GTATAC	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	234, 476
BtrI	CACGTC	1 cut(s)	279
BtsCI	GGATG	4 cut(s)	58, 70, 572, 607
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	2 cut(s)	157, 318
BveI	ACCTGC	1 cut(s)	765
Cac8I	GCNNGC	1 cut(s)	762
CciI	TCATGA	2 cut(s)	489, 718
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	128, 734
CviAII	CATG	6 cut(s)	107, 387, 490, 638, 707, 719
CviJI	RGCY	7 cut(s)	123, 234, 469, 476, 555, 614, 727
CviKI_1	RGCY	7 cut(s)	123, 234, 469, 476, 555, 614, 727
CviQI	GTAC	2 cut(s)	128, 734
DdeI	CTNAG	2 cut(s)	256, 728
DpnI	GATC	2 cut(s)	357, 488
DpnII	GATC	2 cut(s)	355, 486
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco147I	AGGCCT	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	6 cut(s)	110, 390, 493, 641, 710, 722
FatI	CATG	6 cut(s)	106, 386, 489, 637, 706, 718
FauNDI	CATATG	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	3 cut(s)	229, 232, 345
FokI	GGATG	4 cut(s)	65, 77, 559, 614
Fsp4HI	GCNGC	3 cut(s)	229, 232, 345
FspBI	CTAG	1 cut(s)	761
GluI	GCNGC	3 cut(s)	229, 232, 345
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	234, 476
Hin1II	CATG	6 cut(s)	110, 390, 493, 641, 710, 722
HinfI	GANTC	3 cut(s)	26, 110, 673
HphI	GGTGA	4 cut(s)	71, 105, 382, 537
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	5 cut(s)	174, 274, 399, 598, 646
Hpy188III	TCNNGA	5 cut(s)	164, 490, 662, 677, 719
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	83, 696
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	2 cut(s)	278, 418
HpyCH4V	TGCA	7 cut(s)	106, 248, 347, 377, 634, 670, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 383, 523
HpyF3I	CTNAG	2 cut(s)	256, 728
HpySE526I	ACGT	2 cut(s)	278, 418
Hsp92II	CATG	6 cut(s)	110, 390, 493, 641, 710, 722
KpnI	GGTACC	1 cut(s)	737
Kzo9I	GATC	2 cut(s)	355, 486
LmnI	GCTCC	1 cut(s)	155
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	178, 772
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	2 cut(s)	278, 418
MalI	GATC	2 cut(s)	357, 488
MboI	GATC	2 cut(s)	355, 486
MboII	GAAGA	7 cut(s)	23, 98, 211, 214, 505, 578, 711
MluCI	AATT	6 cut(s)	286, 506, 518, 617, 657, 786
MlyI	GAGTC	1 cut(s)	667
MnlI	CCTC	9 cut(s)	43, 55, 189, 198, 231, 361, 386, 592, 723
Mph1103I	ATGCAT	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	183, 383, 523
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	2 cut(s)	355, 486
NheI	GCTAGC	1 cut(s)	760
NlaIII	CATG	6 cut(s)	110, 390, 493, 641, 710, 722
NlaIV	GGNNCC	1 cut(s)	735
NsiI	ATGCAT	1 cut(s)	250
NspI	RCATGY	3 cut(s)	390, 641, 710
PagI	TCATGA	2 cut(s)	489, 718
PceI	AGGCCT	1 cut(s)	476
PciI	ACATGT	2 cut(s)	637, 706
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	26, 110
PkrI	GCNGC	3 cut(s)	230, 233, 346
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
PscI	ACATGT	2 cut(s)	637, 706
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	735
PspPI	GGNCC	1 cut(s)	233
RsaI	GTAC	2 cut(s)	129, 735
RsaNI	GTAC	2 cut(s)	128, 734
SatI	GCNGC	3 cut(s)	229, 232, 345
Sau3AI	GATC	2 cut(s)	355, 486
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	667
ScrFI	CCNGG	1 cut(s)	383
SetI	ASST	9 cut(s)	184, 266, 281, 372, 397, 421, 433, 739, 759
SfaNI	GCATC	2 cut(s)	178, 772
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
Sse9I	AATT	6 cut(s)	286, 506, 518, 617, 657, 786
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	3 cut(s)	228, 231, 424
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	1 cut(s)	761
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	2 cut(s)	281, 421
TaqI	TCGA	3 cut(s)	69, 78, 84
TasI	AATT	6 cut(s)	286, 506, 518, 617, 657, 786
TauI	GCSGC	2 cut(s)	231, 234
TfiI	GAWTC	2 cut(s)	26, 110
TscAI	CASTG	2 cut(s)	157, 325
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	4 cut(s)	123, 506, 582, 707
TspRI	CASTG	2 cut(s)	157, 325
XapI	RAATTY	4 cut(s)	286, 506, 617, 657
XceI	RCATGY	3 cut(s)	390, 641, 710
XmiI	GTMKAC	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	1 cut(s)	761
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.