RchiOBHm_Chr6g0310491

PHAX RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008081
Physical Location & Seq
Forward (+)
67833643 .. 67834611
969 bp
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UTR
Exon/CDS
Intron
PRQ27922

Sequence Viewer

Length: 435 bp
ATGGAAGGAGAAGATAGCGTATTAGATTCAATATATGATGATAACTTTGAGGATGGTGAGGATGTCGAAATGCTCGATGTCGAAGAAGGGGAGCTTGTGGAGCATGAATCGCAGAATGGCTCGGTACAGGGGAGTGGGGGGAATGACAGTGGAGGAAACCAAGAGCATCAGAGTAAGGGTAGCAAGAATAAGAGGAAGAAGAGGAGAAATAAGAGAAAGAACAGCAGCGGCGGCCCATGGACTAATGTATTTGACATAGACAGGTTTGTTTCGGAGACATGTAGAAATTTGAGAGAGAAAAAATCGTATATGGTATACACTGCTGTTGGTTGTCTTGGTGTTGCTGCATTGTGTGATCTCATCAAAGAGATACCATTAGCAACTGGTCGTAAAATATGGTACATGTTTATCTTCATTAATATGTGCCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
RNA_GG_bind

Protein Analysis

144

Amino Acids

16.21

Weight (kDa)

5.0

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 315
AciI CCGC 2 cut(s) 228, 231
AcsI RAATTY 1 cut(s) 286
AfaI GTAC 2 cut(s) 126, 401
AflIII ACRYGT 2 cut(s) 278, 402
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 269
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 225, 344
ApoI RAATTY 1 cut(s) 286
AseI ATTAAT 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 68
BbvI GCAGC 2 cut(s) 237, 331
BccI CCATC 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 269
BisI GCNGC 4 cut(s) 226, 229, 232, 345
BlsI GCNGC 4 cut(s) 227, 230, 233, 346
BmgT120I GGNCC 1 cut(s) 233
BmsI GCATC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 2 cut(s) 58, 67
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 237, 331
BshFI GGCC 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 1 cut(s) 234
Bsp143I GATC 1 cut(s) 355
Bsp19I CCATGG 1 cut(s) 236
BspACI CCGC 2 cut(s) 228, 231
BspANI GGCC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 1 cut(s) 355
BssNAI GTATAC 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 236
Bst1107I GTATAC 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 194
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 58, 67
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 3 cut(s) 100, 109, 231
BstNSI RCATGY 2 cut(s) 282, 406
BstV1I GCAGC 2 cut(s) 237, 331
BstZ17I GTATAC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 236
BtsCI GGATG 2 cut(s) 58, 67
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 154, 318
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 125, 400
CviAII CATG 4 cut(s) 104, 237, 279, 403
CviJI RGCY 3 cut(s) 94, 120, 234
CviKI_1 RGCY 3 cut(s) 94, 120, 234
CviQI GTAC 2 cut(s) 125, 400
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 4 cut(s) 107, 240, 282, 406
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 4 cut(s) 103, 236, 278, 402
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 4 cut(s) 226, 229, 232, 345
FokI GGATG 2 cut(s) 65, 74
Fsp4HI GCNGC 4 cut(s) 226, 229, 232, 345
GluI GCNGC 4 cut(s) 226, 229, 232, 345
HaeIII GGCC 1 cut(s) 234
Hin1II CATG 4 cut(s) 107, 240, 282, 406
HinfI GANTC 2 cut(s) 26, 107
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 171, 274
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 109, 231
Hsp92II CATG 4 cut(s) 107, 240, 282, 406
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 2 cut(s) 91, 100
LpnPI CCDG 3 cut(s) 113, 247, 369
Lsp1109I GCAGC 2 cut(s) 237, 331
LweI GCATC 1 cut(s) 175
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 5 cut(s) 23, 95, 208, 211, 403
MluCI AATT 1 cut(s) 286
MnlI CCTC 5 cut(s) 43, 52, 146, 186, 195
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 228
MwoI GCNNNNNNNGC 3 cut(s) 100, 109, 231
NcoI CCATGG 1 cut(s) 236
NdeII GATC 1 cut(s) 355
NlaIII CATG 4 cut(s) 107, 240, 282, 406
NspI RCATGY 2 cut(s) 282, 406
PciI ACATGT 2 cut(s) 278, 402
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 2 cut(s) 26, 107
PkrI GCNGC 4 cut(s) 227, 230, 233, 346
PscI ACATGT 2 cut(s) 278, 402
PshBI ATTAAT 1 cut(s) 417
PspPI GGNCC 1 cut(s) 233
RsaI GTAC 2 cut(s) 126, 401
RsaNI GTAC 2 cut(s) 125, 400
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 4 cut(s) 226, 229, 232, 345
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 1 cut(s) 233
SetI ASST 2 cut(s) 96, 266
SfaNI GCATC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 419
Sse9I AATT 1 cut(s) 286
SsiI CCGC 2 cut(s) 228, 231
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 3 cut(s) 66, 75, 81
TasI AATT 1 cut(s) 286
TauI GCSGC 2 cut(s) 231, 234
TfiI GAWTC 2 cut(s) 26, 107
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 2 cut(s) 154, 325
TseI GCWGC 2 cut(s) 225, 344
TspDTI ATGAA 2 cut(s) 120, 403
TspRI CASTG 2 cut(s) 154, 325
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 1 cut(s) 286
XceI RCATGY 2 cut(s) 282, 406
XmiI GTMKAC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.