Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008081

Physical Location & Seq

Genomic Coordinates Reverse (-)

36087727 .. 36090957

Gene Structure 3231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G414900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAAGGAGAACACAACATACTAGACGCAGTATTTGAAGACGATAACTTTGAAGATGGCGAAGATGTTGAGATGCTTGATGTGGAAGAAGGAGAGCTTGTGGAAGAAGGGGAGCTTGTGGATTTTAACTCACAAAATGGTTCGGGACAGATCAGTGGTGGCAATGTCAGTGTAGCAAACCAAGAACGTCAGGGCAAGAATCAGAAGCGCAGGGGTAAGAAGAAGAGGAATAGGAGAAGGAACAGTGGCCCTGGAATTAATGTCACTGACATAGACAGGTTTGTGATGGATACATGTAGGCGACTGAAAGAGAAGAAATCATATCTGGTATATACTGCTGTTGGTTGTCTGGGTGTTCTTGCATTGAATGATCTCGTCAAAGAGGTGGATGCGATCCAGGCTTGTGGAGGTCAGATGACTCATGATGGCAAACGTTTCCGATTTGGTGGTGGAGTACTATGGAGTATCATCAAAGCACGAGAACCAAAGGCCTACAAAGAGATAATGAAAAAAGGAAGGGAATTTGAGAAGCAATTCAGGTCAACAAATAATAGACAACCAATACAGCAAGGGAAAGAAGGTTCATCTAAAGCAATTGTGAATTCATTCAAGGATGATACTCCAGCTAATATTTCAGATGCCGTACCGGTTATTTGTCAAATGCAAACTCAAGGCATTCAGTCAAATACTGAAGGGAAACAACTTTCTGTTCATGATAGGTTAAGGGTACCTGTTTCATATGATGATGACCTGCTTGGAGAGGCGCCCAAAGATGATGCACTTGAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RNA_GG_bind

Protein Analysis

264

Amino Acids

29.4

Weight (kDa)

5.36

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20430
fragaria_vesca	FvH4_2g32180 FvH4_2g32180 FvH4_2g32180
prunus_persica	Prupe.1G414900_v2.0.a1 Prupe.1G414900_v2.0.a1 Prupe.1G414900_v2.0.a1
pyrus_communis	pycom15g05780
rosa_chinensis	RchiOBHm_Chr6g0310491 RchiOBHm_Chr6g0310501
rosa_laevigata	RLG00000010478 RLG00000015866
rosa_multiflora	Rmu_co8215328.1_g000001 Rmu_sc0014388.1_g000001 Rmu_sc0016392.1_g000007 Rmu_sc0020729.1_g000004 Rmu_sc0035020.1_g000003
rosa_roxburghii	Rroxscaffold_7G00158480
rosa_rugosa	Rorug06G0380800
rosa_samantha	Rh6AG494900 Rh6BG504500 Rh6CG509800 Rh6DG495800
rosa_wichuraiana	Rw6G043040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	759
Acc65I	GGTACC	1 cut(s)	727
AccB1I	GGYRCC	2 cut(s)	727, 763
AclI	AACGTT	1 cut(s)	433
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	521, 601
AcuI	CTGAAG	1 cut(s)	711
AcyI	GRCGYC	1 cut(s)	764
AfaI	GTAC	3 cut(s)	456, 645, 729
AflIII	ACRYGT	1 cut(s)	293
AgeI	ACCGGT	1 cut(s)	646
AgsI	TTSAA	5 cut(s)	38, 53, 367, 610, 785
AjnI	CCWGG	2 cut(s)	250, 396
AloI	GAACNNNNNNTCC	2 cut(s)	565, 597
AluBI	AGCT	3 cut(s)	97, 115, 626
AluI	AGCT	3 cut(s)	97, 115, 626
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	247, 489
ApoI	RAATTY	2 cut(s)	521, 601
ArsI	GACNNNNNNTTYG	4 cut(s)	17, 32, 49, 64
AseI	ATTAAT	1 cut(s)	258
AsiGI	ACCGGT	1 cut(s)	646
Asp700I	GAANNNNTTC	2 cut(s)	533, 605
Asp718I	GGTACC	1 cut(s)	727
AspLEI	GCGC	2 cut(s)	210, 766
AspS9I	GGNCC	1 cut(s)	248
BanI	GGYRCC	2 cut(s)	727, 763
BauI	CACGAG	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	45
BccI	CCATC	3 cut(s)	50, 280, 419
BceAI	ACGGC	1 cut(s)	626
BciT130I	CCWGG	2 cut(s)	252, 398
BciVI	GTATCC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	767
BfuAI	ACCTGC	1 cut(s)	759
BfuI	GTATCC	1 cut(s)	283
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	2 cut(s)	252, 398
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	2 cut(s)	729, 765
BmrFI	CCNGG	2 cut(s)	252, 398
BmsI	GCATC	4 cut(s)	63, 379, 628, 766
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	764
BsaJI	CCNNGG	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	646
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bse118I	RCCGGY	1 cut(s)	646
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	252, 398
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	2 cut(s)	394, 619
BseMI	GCAATG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	249, 491
BshNI	GGYRCC	2 cut(s)	727, 763
BshTI	ACCGGT	1 cut(s)	646
BsiSI	CCGG	1 cut(s)	647
BslFI	GGGAC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	675
BsnI	GGCC	2 cut(s)	249, 491
Bsp143I	GATC	3 cut(s)	150, 370, 393
BspANI	GGCC	2 cut(s)	249, 491
BspHI	TCATGA	2 cut(s)	421, 712
BspLI	GGNNCC	2 cut(s)	729, 765
BspMI	ACCTGC	1 cut(s)	759
BspPI	GGATC	1 cut(s)	388
BspT107I	GGYRCC	2 cut(s)	727, 763
BsrDI	GCAATG	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	646
BssAI	RCCGGY	1 cut(s)	646
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	3 cut(s)	150, 370, 393
BssNI	GRCGYC	1 cut(s)	764
BssSI	CACGAG	1 cut(s)	477
Bst2BI	CACGAG	1 cut(s)	477
Bst2UI	CCWGG	2 cut(s)	252, 398
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	764
BstF5I	GGATG	2 cut(s)	394, 619
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	2 cut(s)	210, 766
BstKTI	GATC	3 cut(s)	153, 373, 396
BstMBI	GATC	3 cut(s)	150, 370, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	2 cut(s)	252, 398
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	2 cut(s)	250, 396
BstV2I	GAAGAC	1 cut(s)	45
BstXI	CCANNNNNNTGG	1 cut(s)	404
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	249, 491
BtsCI	GGATG	2 cut(s)	394, 619
BtsIMutI	CAGTG	4 cut(s)	160, 175, 250, 264
BveI	ACCTGC	1 cut(s)	759
CciI	TCATGA	2 cut(s)	421, 712
CfoI	GCGC	2 cut(s)	210, 766
Cfr10I	RCCGGY	1 cut(s)	646
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	3 cut(s)	455, 644, 728
CspAI	ACCGGT	1 cut(s)	646
CviAII	CATG	3 cut(s)	294, 422, 713
CviJI	RGCY	6 cut(s)	97, 115, 249, 401, 491, 626
CviKI_1	RGCY	6 cut(s)	97, 115, 249, 401, 491, 626
CviQI	GTAC	3 cut(s)	455, 644, 728
DinI	GGCGCC	1 cut(s)	765
DpnI	GATC	3 cut(s)	152, 372, 395
DpnII	GATC	3 cut(s)	150, 370, 393
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	711
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	2 cut(s)	250, 396
EgeI	GGCGCC	1 cut(s)	765
EheI	GGCGCC	1 cut(s)	765
FaeI	CATG	3 cut(s)	297, 425, 716
FalI	AAGNNNNNCTT	4 cut(s)	81, 113, 99, 131
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	3 cut(s)	293, 421, 712
FauNDI	CATATG	1 cut(s)	739
FokI	GGATG	2 cut(s)	401, 626
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	2 cut(s)	209, 765
GsuI	CTGGAG	1 cut(s)	606
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	2 cut(s)	249, 491
HapII	CCGG	1 cut(s)	647
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	2 cut(s)	210, 766
Hin1I	GRCGYC	1 cut(s)	764
Hin1II	CATG	3 cut(s)	297, 425, 716
Hin6I	GCGC	2 cut(s)	208, 764
HinP1I	GCGC	2 cut(s)	208, 764
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	2 cut(s)	199, 418
HpaII	CCGG	1 cut(s)	647
Hpy166II	GTNNAC	1 cut(s)	543
Hpy188I	TCNGA	4 cut(s)	204, 414, 440, 637
Hpy188III	TCNNGA	3 cut(s)	144, 422, 713
Hpy8I	GTNNAC	1 cut(s)	543
HpyAV	CCTTC	6 cut(s)	83, 101, 231, 510, 572, 686
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	2 cut(s)	187, 433
HpyCH4V	TGCA	3 cut(s)	362, 664, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpySE526I	ACGT	2 cut(s)	187, 433
Hsp92I	GRCGYC	1 cut(s)	764
Hsp92II	CATG	3 cut(s)	297, 425, 716
HspAI	GCGC	2 cut(s)	208, 764
KasI	GGCGCC	1 cut(s)	763
KpnI	GGTACC	1 cut(s)	731
Kzo9I	GATC	3 cut(s)	150, 370, 393
LmnI	GCTCC	1 cut(s)	112
LweI	GCATC	4 cut(s)	63, 379, 628, 766
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	2 cut(s)	187, 433
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	152, 372, 395
MboI	GATC	3 cut(s)	150, 370, 393
MboII	GAAGA	8 cut(s)	50, 65, 74, 98, 116, 232, 235, 325
MfeI	CAATTG	1 cut(s)	594
MluCI	AATT	5 cut(s)	255, 521, 533, 594, 601
Mly113I	GGCGCC	1 cut(s)	764
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	4 cut(s)	219, 376, 401, 754
MroXI	GAANNNNTTC	2 cut(s)	533, 605
MseI	TTAA	3 cut(s)	126, 258, 722
MspI	CCGG	1 cut(s)	647
MspR9I	CCNGG	2 cut(s)	252, 398
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	675
MvaI	CCWGG	2 cut(s)	252, 398
MwoI	GCNNNNNNNGC	1 cut(s)	398
NarI	GGCGCC	1 cut(s)	764
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	3 cut(s)	150, 370, 393
NlaIII	CATG	3 cut(s)	297, 425, 716
NlaIV	GGNNCC	2 cut(s)	729, 765
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	297
PagI	TCATGA	2 cut(s)	421, 712
PceI	AGGCCT	1 cut(s)	491
PciI	ACATGT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	675
PdmI	GAANNNNTTC	2 cut(s)	533, 605
PfeI	GAWTC	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	646
PleI	GAGTC	1 cut(s)	412
PluTI	GGCGCC	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	412
PscI	ACATGT	1 cut(s)	293
PshBI	ATTAAT	1 cut(s)	258
Psp1406I	AACGTT	1 cut(s)	433
Psp6I	CCWGG	2 cut(s)	250, 396
PspGI	CCWGG	2 cut(s)	250, 396
PspN4I	GGNNCC	2 cut(s)	729, 765
PspPI	GGNCC	1 cut(s)	248
PsrI	GAACNNNNNNTAC	1 cut(s)	35
RsaI	GTAC	3 cut(s)	456, 645, 729
RsaNI	GTAC	3 cut(s)	455, 644, 728
SaqAI	TTAA	3 cut(s)	126, 258, 722
Sau3AI	GATC	3 cut(s)	150, 370, 393
Sau96I	GGNCC	1 cut(s)	248
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	2 cut(s)	252, 398
SfaNI	GCATC	4 cut(s)	63, 379, 628, 766
SfoI	GGCGCC	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	5 cut(s)	255, 521, 533, 594, 601
SseBI	AGGCCT	1 cut(s)	491
SspDI	GGCGCC	1 cut(s)	763
SspI	AATATT	2 cut(s)	631, 788
SspMI	CTAG	1 cut(s)	23
StuI	AGGCCT	1 cut(s)	491
StyD4I	CCNGG	2 cut(s)	250, 396
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	2 cut(s)	190, 436
TasI	AATT	5 cut(s)	255, 521, 533, 594, 601
TatI	WGTACW	1 cut(s)	454
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	3 cut(s)	126, 258, 722
Tru9I	TTAA	3 cut(s)	126, 258, 722
TscAI	CASTG	4 cut(s)	160, 175, 250, 271
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	5 cut(s)	521, 573, 594, 701, 726
TspRI	CASTG	4 cut(s)	160, 175, 250, 271
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	2 cut(s)	521, 601
XceI	RCATGY	1 cut(s)	297
XmnI	GAANNNNTTC	2 cut(s)	533, 605
XspI	CTAG	1 cut(s)	23
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.