Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020729.1

Orthogroup ID

OG0008081

Physical Location & Seq

Genomic Coordinates Reverse (-)

13019 .. 15222

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020729.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atggaaggagaagatagcgtattagattcaatatatgatgataactttgaggatggtgaggatgtcgaaatgctcgatgtcgaagaaggggagcttgtggagcatgaatctcagaatggctcggtacaggggagtggggggaatgacagtggagcaaaccaagagcatcagagtaagggtagcaagaataagaggaagaagaggagaaataagagaaagaacagcagcggcggcccatggactaatgtatttgacatagacaggtttgtttcggagacatgtagaaatttgagagagaaaaaatcgtatatggtatacactgctgttggttgtcttggtgttgctgcattgtgtgatctcatcaaagaggtgaatgcaatccaggcatgtggaggtcagatgactgctaatggcagacgtttgcggacaggtggtggtctgctgtggaatatcatcaaagcacgagagccaaaggcctataaagagatcatgaagaaagccaaggaatttgagaagcaattcaagcaaccatataatagacaaccatcaacaaaccaaagtaaagtagaaccatcccaagtatttgctacttcatcagaggatgcgactccagccaaattttcaaatgatttgcagcatgtatctgaaatgactgaaatgaccgaaatgcctgaagttcagactcgagacaatcagtcaaatccccgaagtaaacacgtttctgttcatgataggctaagggtacctgtttcatatgatgatgacctgcttacaggggaacccaaagatgatgcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RNA_GG_bind

Protein Analysis

266

Amino Acids

29.83

Weight (kDa)

5.44

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20430
fragaria_vesca	FvH4_2g32180 FvH4_2g32180 FvH4_2g32180
prunus_persica	Prupe.1G414900_v2.0.a1 Prupe.1G414900_v2.0.a1 Prupe.1G414900_v2.0.a1
pyrus_communis	pycom15g05780
rosa_chinensis	RchiOBHm_Chr6g0310491 RchiOBHm_Chr6g0310501
rosa_laevigata	RLG00000010478 RLG00000015866
rosa_multiflora	Rmu_co8215328.1_g000001 Rmu_sc0014388.1_g000001 Rmu_sc0016392.1_g000007 Rmu_sc0020729.1_g000004 Rmu_sc0035020.1_g000003
rosa_roxburghii	Rroxscaffold_7G00158480
rosa_rugosa	Rorug06G0380800
rosa_samantha	Rh6AG494900 Rh6BG504500 Rh6CG509800 Rh6DG495800
rosa_wichuraiana	Rw6G043040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	774
Acc65I	GGTACC	1 cut(s)	742
AccB1I	GGYRCC	1 cut(s)	742
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	3 cut(s)	228, 231, 424
AcsI	RAATTY	3 cut(s)	286, 506, 617
AcuI	CTGAAG	1 cut(s)	693
AfaI	GTAC	2 cut(s)	126, 744
AflIII	ACRYGT	2 cut(s)	278, 715
AgsI	TTSAA	3 cut(s)	30, 523, 624
AhdI	GACNNNNNGTC	1 cut(s)	694
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	2 cut(s)	269, 681
Ama87I	CYCGRG	1 cut(s)	684
AoxI	GGCC	2 cut(s)	232, 474
ApeKI	GCWGC	3 cut(s)	225, 344, 634
ApoI	RAATTY	3 cut(s)	286, 506, 617
Asp700I	GAANNNNTTC	1 cut(s)	518
Asp718I	GGTACC	1 cut(s)	742
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	68, 382
AvaI	CYCGRG	1 cut(s)	684
BanI	GGYRCC	1 cut(s)	742
BauI	CACGAG	1 cut(s)	462
BbvI	GCAGC	3 cut(s)	237, 331, 646
BccI	CCATC	3 cut(s)	47, 553, 580
BciT130I	CCWGG	1 cut(s)	383
BcoDI	GTCTC	2 cut(s)	269, 681
BfuAI	ACCTGC	1 cut(s)	774
BisI	GCNGC	5 cut(s)	226, 229, 232, 345, 635
BlsI	GCNGC	5 cut(s)	227, 230, 233, 346, 636
Bme1390I	CCNGG	1 cut(s)	383
BmeRI	GACNNNNNGTC	1 cut(s)	694
BmeT110I	CYCGRG	1 cut(s)	684
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	744, 780
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	3 cut(s)	175, 592, 781
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	737
BsaJI	CCNNGG	2 cut(s)	236, 501
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	2 cut(s)	236, 501
BseGI	GGATG	4 cut(s)	58, 67, 572, 607
BseMII	CTCAG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	217
BseXI	GCAGC	3 cut(s)	237, 331, 646
BshFI	GGCC	2 cut(s)	234, 476
BshNI	GGYRCC	1 cut(s)	742
BsiHKCI	CYCGRG	1 cut(s)	684
BsmAI	GTCTC	2 cut(s)	269, 681
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	234, 476
BsoBI	CYCGRG	1 cut(s)	684
Bsp143I	GATC	2 cut(s)	355, 486
Bsp19I	CCATGG	1 cut(s)	236
BspACI	CCGC	3 cut(s)	228, 231, 424
BspANI	GGCC	2 cut(s)	234, 476
BspCNI	CTCAG	1 cut(s)	124
BspHI	TCATGA	2 cut(s)	489, 727
BspLI	GGNNCC	2 cut(s)	744, 780
BspMI	ACCTGC	1 cut(s)	774
BspT107I	GGYRCC	1 cut(s)	742
BssECI	CCNNGG	2 cut(s)	236, 501
BssMI	GATC	2 cut(s)	355, 486
BssNAI	GTATAC	1 cut(s)	316
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	2 cut(s)	236, 501
Bst1107I	GTATAC	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	111, 737
BstDSI	CCRYGG	1 cut(s)	236
BstF5I	GGATG	4 cut(s)	58, 67, 572, 607
BstKTI	GATC	2 cut(s)	358, 489
BstMAI	GTCTC	2 cut(s)	269, 681
BstMBI	GATC	2 cut(s)	355, 486
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 231, 383, 523, 611
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	3 cut(s)	282, 390, 641
BstSCI	CCNGG	1 cut(s)	381
BstV1I	GCAGC	3 cut(s)	237, 331, 646
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstZ17I	GTATAC	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	234, 476
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	4 cut(s)	58, 67, 572, 607
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	2 cut(s)	154, 318
BveI	ACCTGC	1 cut(s)	774
CciI	TCATGA	2 cut(s)	489, 727
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	125, 743
CviAII	CATG	7 cut(s)	104, 237, 279, 387, 490, 638, 728
CviJI	RGCY	8 cut(s)	94, 120, 234, 469, 476, 500, 614, 736
CviKI_1	RGCY	8 cut(s)	94, 120, 234, 469, 476, 500, 614, 736
CviQI	GTAC	2 cut(s)	125, 743
DdeI	CTNAG	2 cut(s)	111, 737
DpnI	GATC	2 cut(s)	357, 488
DpnII	GATC	2 cut(s)	355, 486
DriI	GACNNNNNGTC	1 cut(s)	694
Eam1104I	CTCTTC	1 cut(s)	194
Eam1105I	GACNNNNNGTC	1 cut(s)	694
EarI	CTCTTC	1 cut(s)	194
Eco130I	CCWWGG	2 cut(s)	236, 501
Eco147I	AGGCCT	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	684
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	2 cut(s)	236, 501
ErhI	CCWWGG	2 cut(s)	236, 501
FaeI	CATG	7 cut(s)	107, 240, 282, 390, 493, 641, 731
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	7 cut(s)	103, 236, 278, 386, 489, 637, 727
FauNDI	CATATG	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	5 cut(s)	226, 229, 232, 345, 635
FokI	GGATG	4 cut(s)	65, 74, 559, 614
Fsp4HI	GCNGC	5 cut(s)	226, 229, 232, 345, 635
GluI	GCNGC	5 cut(s)	226, 229, 232, 345, 635
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	234, 476
Hin1II	CATG	7 cut(s)	107, 240, 282, 390, 493, 641, 731
HinfI	GANTC	4 cut(s)	26, 107, 607, 682
HphI	GGTGA	2 cut(s)	68, 382
Hpy166II	GTNNAC	2 cut(s)	316, 713
Hpy188I	TCNGA	7 cut(s)	114, 171, 274, 399, 598, 646, 681
Hpy188III	TCNNGA	3 cut(s)	490, 686, 728
Hpy8I	GTNNAC	2 cut(s)	316, 713
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	2 cut(s)	418, 717
HpyCH4V	TGCA	4 cut(s)	347, 377, 634, 794
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 231, 383, 523, 611
HpyF3I	CTNAG	2 cut(s)	111, 737
HpySE526I	ACGT	2 cut(s)	418, 717
Hsp92II	CATG	7 cut(s)	107, 240, 282, 390, 493, 641, 731
KpnI	GGTACC	1 cut(s)	746
Kzo9I	GATC	2 cut(s)	355, 486
LmnI	GCTCC	3 cut(s)	91, 100, 152
Lsp1109I	GCAGC	3 cut(s)	237, 331, 646
LweI	GCATC	3 cut(s)	175, 592, 781
MaeII	ACGT	2 cut(s)	418, 717
MalI	GATC	2 cut(s)	357, 488
MboI	GATC	2 cut(s)	355, 486
MboII	GAAGA	5 cut(s)	23, 95, 208, 211, 505
MluCI	AATT	5 cut(s)	286, 506, 518, 617, 795
MlyI	GAGTC	2 cut(s)	601, 676
MnlI	CCTC	7 cut(s)	43, 52, 186, 195, 361, 386, 592
MroXI	GAANNNNTTC	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	5 cut(s)	100, 231, 383, 523, 611
NcoI	CCATGG	1 cut(s)	236
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	2 cut(s)	355, 486
NlaIII	CATG	7 cut(s)	107, 240, 282, 390, 493, 641, 731
NlaIV	GGNNCC	2 cut(s)	744, 780
NspI	RCATGY	3 cut(s)	282, 390, 641
PaeR7I	CTCGAG	1 cut(s)	684
PagI	TCATGA	2 cut(s)	489, 727
PceI	AGGCCT	1 cut(s)	476
PciI	ACATGT	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	26, 107
PkrI	GCNGC	5 cut(s)	227, 230, 233, 346, 636
PleI	GAGTC	2 cut(s)	601, 676
PpsI	GAGTC	2 cut(s)	601, 676
PscI	ACATGT	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	744, 780
PspPI	GGNCC	1 cut(s)	233
RsaI	GTAC	2 cut(s)	126, 744
RsaNI	GTAC	2 cut(s)	125, 743
SatI	GCNGC	5 cut(s)	226, 229, 232, 345, 635
Sau3AI	GATC	2 cut(s)	355, 486
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	2 cut(s)	601, 676
ScrFI	CCNGG	1 cut(s)	383
SetI	ASST	9 cut(s)	96, 266, 372, 397, 421, 433, 720, 748, 768
SfaNI	GCATC	3 cut(s)	175, 592, 781
Sfr274I	CTCGAG	1 cut(s)	684
SlaI	CTCGAG	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	684
SmoI	CTYRAG	1 cut(s)	684
Sse9I	AATT	5 cut(s)	286, 506, 518, 617, 795
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	3 cut(s)	228, 231, 424
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	2 cut(s)	236, 501
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	2 cut(s)	421, 720
TaqI	TCGA	4 cut(s)	66, 75, 81, 685
TaqII	GACCGA	1 cut(s)	677
TasI	AATT	5 cut(s)	286, 506, 518, 617, 795
TauI	GCSGC	2 cut(s)	231, 234
TfiI	GAWTC	2 cut(s)	26, 107
TscAI	CASTG	2 cut(s)	154, 325
TseI	GCWGC	3 cut(s)	225, 344, 634
TspDTI	ATGAA	5 cut(s)	120, 506, 582, 716, 741
TspRI	CASTG	2 cut(s)	154, 325
XapI	RAATTY	3 cut(s)	286, 506, 617
XceI	RCATGY	3 cut(s)	282, 390, 641
XhoI	CTCGAG	1 cut(s)	684
XmiI	GTMKAC	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.