Rroxscaffold_7G00158480

PHAX RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008081
Physical Location & Seq
Reverse (-)
1896795 .. 1899537
2743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158480.1

Sequence Viewer

Length: 810 bp
ATGGAAGGAGAAGATAGCGTATTAGATTCAATATATGATGATAACTTTGAGGATGGTGAGGATGTCGAAATGCTCGATGTCGAAGAAGGGGAGCTTGTGGAGCATGAATCGCAGAATGGCTCGGTACAGGGGAGTGGGGAGAATGACAGTGGAGCAAACCAAGAGCATCAGAGTAAGGGTAGCAAGAATAAGAGGAAGAAGAGGAGAAATAAGAGAAAGAACAGCAGCGGCGGCCCATGGACTAATGCATTTGACATAGACAGGTTTGTTTCAGAGACATGTAGAAATTTGAGGGAGAAAAAATCGTATATGGTATACACTGCTGTTGGTTGTCTTGGTGTTGCTGCATTGTGTGATCTCATCAAAGAGGTGAATGCAATCCAGGCATGTGGAGGTCAGATGACTGCTAATGGCAGACGTTTGCGGACAGGTGGTGGTCTGCTGTGGAATATCATCAAAGCACAAGAGCCAAAGGCCTATAAAGAGATCATGAAGAAAGCCAAGGAATTTGAGGGAACTGGTAAGCAATTCAAGCAACCATATAATCGACAACCACCAACAAACCAAAGTAAAGTAGAACCATCCCAAGTATTTGCTACTTCATCAGAGGATGCGACTCCAGTCAAATTTTCAAATGATTTGCAGCATGTATCTGAAATGACTGAAATGACCAAAATGCCTGAAGTTCAGACTCGAGACAATCAGTCAAATCCCCGAAGTAAACACGTTTCTGTTCATGATAGGATGAGGGTACCGGTTTCATATGATGATGACCTGCTTACGGGGGAACCCAAAGATGATGCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
RNA_GG_bind

Protein Analysis

269

Amino Acids

30.11

Weight (kDa)

5.44

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHAX_RNA-bd PF10258 89 - 169 2.3e-24 Phosphorylated adapter RNA export protein, RNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 783
Acc65I GGTACC 1 cut(s) 751
AccB1I GGYRCC 1 cut(s) 751
AccI GTMKAC 1 cut(s) 315
AciI CCGC 3 cut(s) 228, 231, 424
AcsI RAATTY 3 cut(s) 286, 506, 626
AcuI CTGAAG 1 cut(s) 702
AfaI GTAC 2 cut(s) 126, 753
AfiI CCNNNNNNNGG 1 cut(s) 781
AflIII ACRYGT 2 cut(s) 278, 724
AgeI ACCGGT 1 cut(s) 754
AgsI TTSAA 3 cut(s) 30, 532, 633
AhdI GACNNNNNGTC 1 cut(s) 703
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 2 cut(s) 269, 690
Ama87I CYCGRG 1 cut(s) 693
AoxI GGCC 2 cut(s) 232, 474
ApeKI GCWGC 3 cut(s) 225, 344, 643
ApoI RAATTY 3 cut(s) 286, 506, 626
AsiGI ACCGGT 1 cut(s) 754
Asp718I GGTACC 1 cut(s) 751
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 68, 382
AvaI CYCGRG 1 cut(s) 693
BanI GGYRCC 1 cut(s) 751
BbvI GCAGC 3 cut(s) 237, 331, 655
BccI CCATC 2 cut(s) 47, 589
BciT130I CCWGG 1 cut(s) 383
BcoDI GTCTC 2 cut(s) 269, 690
BfuAI ACCTGC 1 cut(s) 783
BisI GCNGC 5 cut(s) 226, 229, 232, 345, 644
BlsI GCNGC 5 cut(s) 227, 230, 233, 346, 645
Bme1390I CCNGG 1 cut(s) 383
BmeRI GACNNNNNGTC 1 cut(s) 703
BmeT110I CYCGRG 1 cut(s) 693
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 753, 789
BmrFI CCNGG 1 cut(s) 383
BmsI GCATC 3 cut(s) 175, 601, 790
BoxI GACNNNNGTC 1 cut(s) 620
BpmI CTGGAG 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 236, 501
BsaWI WCCGGW 1 cut(s) 754
Bsc4I CCNNNNNNNGG 1 cut(s) 781
Bse118I RCCGGY 1 cut(s) 754
Bse1I ACTGG 2 cut(s) 523, 620
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 2 cut(s) 236, 501
BseGI GGATG 5 cut(s) 58, 67, 581, 616, 750
BseLI CCNNNNNNNGG 1 cut(s) 781
BseNI ACTGG 2 cut(s) 523, 620
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 3 cut(s) 237, 331, 655
BshFI GGCC 2 cut(s) 234, 476
BshNI GGYRCC 1 cut(s) 751
BshTI ACCGGT 1 cut(s) 754
BsiHKCI CYCGRG 1 cut(s) 693
BsiSI CCGG 1 cut(s) 755
BslI CCNNNNNNNGG 1 cut(s) 781
BsmAI GTCTC 2 cut(s) 269, 690
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 2 cut(s) 234, 476
BsoBI CYCGRG 1 cut(s) 693
Bsp143I GATC 2 cut(s) 355, 486
Bsp19I CCATGG 1 cut(s) 236
BspACI CCGC 3 cut(s) 228, 231, 424
BspANI GGCC 2 cut(s) 234, 476
BspHI TCATGA 2 cut(s) 489, 736
BspLI GGNNCC 2 cut(s) 753, 789
BspMI ACCTGC 1 cut(s) 783
BspT107I GGYRCC 1 cut(s) 751
BsrFI RCCGGY 1 cut(s) 754
BsrI ACTGG 2 cut(s) 523, 620
BssAI RCCGGY 1 cut(s) 754
BssECI CCNNGG 2 cut(s) 236, 501
BssMI GATC 2 cut(s) 355, 486
BssNAI GTATAC 1 cut(s) 316
BssT1I CCWWGG 2 cut(s) 236, 501
Bst1107I GTATAC 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 194
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 5 cut(s) 58, 67, 581, 616, 750
BstKTI GATC 2 cut(s) 358, 489
BstMAI GTCTC 2 cut(s) 269, 690
BstMBI GATC 2 cut(s) 355, 486
BstMWI GCNNNNNNNGC 5 cut(s) 100, 109, 231, 383, 532
BstNI CCWGG 1 cut(s) 383
BstNSI RCATGY 3 cut(s) 282, 390, 650
BstPAI GACNNNNGTC 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 237, 331, 655
BstXI CCANNNNNNTGG 1 cut(s) 389
BstZ17I GTATAC 1 cut(s) 316
BsuRI GGCC 2 cut(s) 234, 476
BtgI CCRYGG 1 cut(s) 236
BtsCI GGATG 5 cut(s) 58, 67, 581, 616, 750
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 154, 318
BveI ACCTGC 1 cut(s) 783
CciI TCATGA 2 cut(s) 489, 736
Cfr10I RCCGGY 1 cut(s) 754
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 125, 752
CspAI ACCGGT 1 cut(s) 754
CviAII CATG 7 cut(s) 104, 237, 279, 387, 490, 647, 737
CviJI RGCY 6 cut(s) 94, 120, 234, 469, 476, 500
CviKI_1 RGCY 6 cut(s) 94, 120, 234, 469, 476, 500
CviQI GTAC 2 cut(s) 125, 752
DpnI GATC 2 cut(s) 357, 488
DpnII GATC 2 cut(s) 355, 486
DriI GACNNNNNGTC 1 cut(s) 703
Eam1104I CTCTTC 1 cut(s) 194
Eam1105I GACNNNNNGTC 1 cut(s) 703
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 2 cut(s) 236, 501
Eco147I AGGCCT 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 693
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 2 cut(s) 236, 501
EcoT22I ATGCAT 1 cut(s) 250
ErhI CCWWGG 2 cut(s) 236, 501
FaeI CATG 7 cut(s) 107, 240, 282, 390, 493, 650, 740
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 7 cut(s) 103, 236, 278, 386, 489, 646, 736
FauNDI CATATG 1 cut(s) 763
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 5 cut(s) 226, 229, 232, 345, 644
FokI GGATG 5 cut(s) 65, 74, 568, 623, 757
Fsp4HI GCNGC 5 cut(s) 226, 229, 232, 345, 644
GluI GCNGC 5 cut(s) 226, 229, 232, 345, 644
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 2 cut(s) 234, 476
HapII CCGG 1 cut(s) 755
Hin1II CATG 7 cut(s) 107, 240, 282, 390, 493, 650, 740
HinfI GANTC 4 cut(s) 26, 107, 616, 691
HpaII CCGG 1 cut(s) 755
HphI GGTGA 2 cut(s) 68, 382
Hpy166II GTNNAC 2 cut(s) 316, 722
Hpy188I TCNGA 6 cut(s) 171, 274, 399, 607, 655, 690
Hpy188III TCNNGA 3 cut(s) 490, 695, 737
Hpy8I GTNNAC 2 cut(s) 316, 722
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 2 cut(s) 418, 726
HpyCH4V TGCA 5 cut(s) 248, 347, 377, 643, 803
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 109, 231, 383, 532
HpySE526I ACGT 2 cut(s) 418, 726
Hsp92II CATG 7 cut(s) 107, 240, 282, 390, 493, 650, 740
KpnI GGTACC 1 cut(s) 755
Kzo9I GATC 2 cut(s) 355, 486
LmnI GCTCC 3 cut(s) 91, 100, 152
Lsp1109I GCAGC 3 cut(s) 237, 331, 655
LweI GCATC 3 cut(s) 175, 601, 790
MaeII ACGT 2 cut(s) 418, 726
MalI GATC 2 cut(s) 357, 488
MboI GATC 2 cut(s) 355, 486
MboII GAAGA 5 cut(s) 23, 95, 208, 211, 505
MluCI AATT 4 cut(s) 286, 506, 527, 626
MlyI GAGTC 2 cut(s) 610, 685
Mph1103I ATGCAT 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 1 cut(s) 755
MspR9I CCNGG 1 cut(s) 383
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 5 cut(s) 100, 109, 231, 383, 532
NcoI CCATGG 1 cut(s) 236
NdeI CATATG 1 cut(s) 763
NdeII GATC 2 cut(s) 355, 486
NlaIII CATG 7 cut(s) 107, 240, 282, 390, 493, 650, 740
NlaIV GGNNCC 2 cut(s) 753, 789
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 3 cut(s) 282, 390, 650
PaeR7I CTCGAG 1 cut(s) 693
PagI TCATGA 2 cut(s) 489, 736
PceI AGGCCT 1 cut(s) 476
PciI ACATGT 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 379
PfeI GAWTC 2 cut(s) 26, 107
PinAI ACCGGT 1 cut(s) 754
PkrI GCNGC 5 cut(s) 227, 230, 233, 346, 645
PleI GAGTC 2 cut(s) 610, 685
PpsI GAGTC 2 cut(s) 610, 685
PscI ACATGT 1 cut(s) 278
PshAI GACNNNNGTC 1 cut(s) 620
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 753, 789
PspPI GGNCC 1 cut(s) 233
RsaI GTAC 2 cut(s) 126, 753
RsaNI GTAC 2 cut(s) 125, 752
SatI GCNGC 5 cut(s) 226, 229, 232, 345, 644
Sau3AI GATC 2 cut(s) 355, 486
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 2 cut(s) 610, 685
ScrFI CCNGG 1 cut(s) 383
SetI ASST 8 cut(s) 96, 266, 372, 397, 421, 433, 729, 777
SfaNI GCATC 3 cut(s) 175, 601, 790
Sfr274I CTCGAG 1 cut(s) 693
SlaI CTCGAG 1 cut(s) 693
SmlI CTYRAG 1 cut(s) 693
SmoI CTYRAG 1 cut(s) 693
Sse9I AATT 4 cut(s) 286, 506, 527, 626
SseBI AGGCCT 1 cut(s) 476
SsiI CCGC 3 cut(s) 228, 231, 424
StuI AGGCCT 1 cut(s) 476
StyD4I CCNGG 1 cut(s) 381
StyI CCWWGG 2 cut(s) 236, 501
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 2 cut(s) 421, 729
TaqI TCGA 5 cut(s) 66, 75, 81, 547, 694
TasI AATT 4 cut(s) 286, 506, 527, 626
TauI GCSGC 2 cut(s) 231, 234
TfiI GAWTC 2 cut(s) 26, 107
TscAI CASTG 2 cut(s) 154, 325
TseI GCWGC 3 cut(s) 225, 344, 643
TspDTI ATGAA 5 cut(s) 120, 506, 591, 725, 750
TspRI CASTG 2 cut(s) 154, 325
XapI RAATTY 3 cut(s) 286, 506, 626
XceI RCATGY 3 cut(s) 282, 390, 650
XhoI CTCGAG 1 cut(s) 693
XmiI GTMKAC 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.