Rmu_co8215328.1_g000001

PHAX RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8215328.1
OG0008081
Physical Location & Seq
Forward (+)
189 .. 720
532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8215328.1_g000001.1.cds

Sequence Viewer

Length: 426 bp
atggaaggagaagatagcgtattagattcaatatatgatgataactttgaggatggtgaggatgtcgaaatgctcgatgtcgaagaaggggagcttgtggagcatgaatctcagaatggctcggtacaggggagtggggggaatgacagtggagcaaaccaagagcatcagagtaagggtagcaagaataagaggaagaagaggagaaataagagaaagaacagcagcggcggcccatggactaatgtatttgacatagacaggtttgtttcggagacatgtagaaatttgagagagaaaaaatcgtatatggtatacactgctgttggttgtcttggtgttgctgcattgtgtgatctcatcaaagaggtaatttatataattaagatacatgattattataatttcttttgtggaaaaggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
RNA_GG_bind

Protein Analysis

141

Amino Acids

15.87

Weight (kDa)

5.0

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AccI GTMKAC 1 cut(s) 315
AciI CCGC 2 cut(s) 228, 231
AcsI RAATTY 1 cut(s) 286
AfaI GTAC 1 cut(s) 126
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 269
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 225, 344
ApoI RAATTY 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 68
BbvI GCAGC 2 cut(s) 237, 331
BccI CCATC 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 269
BisI GCNGC 4 cut(s) 226, 229, 232, 345
BlsI GCNGC 4 cut(s) 227, 230, 233, 346
BmgT120I GGNCC 1 cut(s) 233
BmsI GCATC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 2 cut(s) 58, 67
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 237, 331
BshFI GGCC 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 1 cut(s) 234
Bsp143I GATC 1 cut(s) 355
Bsp19I CCATGG 1 cut(s) 236
BspACI CCGC 2 cut(s) 228, 231
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 1 cut(s) 355
BssNAI GTATAC 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 236
Bst1107I GTATAC 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 58, 67
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 2 cut(s) 100, 231
BstNSI RCATGY 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 237, 331
BstZ17I GTATAC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 236
BtsCI GGATG 2 cut(s) 58, 67
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 154, 318
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 125
CviAII CATG 4 cut(s) 104, 237, 279, 392
CviJI RGCY 3 cut(s) 94, 120, 234
CviKI_1 RGCY 3 cut(s) 94, 120, 234
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 4 cut(s) 107, 240, 282, 395
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 4 cut(s) 103, 236, 278, 391
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 4 cut(s) 226, 229, 232, 345
FokI GGATG 2 cut(s) 65, 74
Fsp4HI GCNGC 4 cut(s) 226, 229, 232, 345
GluI GCNGC 4 cut(s) 226, 229, 232, 345
HaeIII GGCC 1 cut(s) 234
Hin1II CATG 4 cut(s) 107, 240, 282, 395
HinfI GANTC 2 cut(s) 26, 107
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 3 cut(s) 114, 171, 274
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 231
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 4 cut(s) 107, 240, 282, 395
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 3 cut(s) 91, 100, 152
LpnPI CCDG 2 cut(s) 113, 247
Lsp1109I GCAGC 2 cut(s) 237, 331
LweI GCATC 1 cut(s) 175
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 4 cut(s) 23, 95, 208, 211
MluCI AATT 4 cut(s) 286, 372, 381, 403
MnlI CCTC 5 cut(s) 43, 52, 186, 195, 361
MseI TTAA 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 100, 231
NcoI CCATGG 1 cut(s) 236
NdeII GATC 1 cut(s) 355
NlaIII CATG 4 cut(s) 107, 240, 282, 395
NspI RCATGY 1 cut(s) 282
PciI ACATGT 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 2 cut(s) 26, 107
PkrI GCNGC 4 cut(s) 227, 230, 233, 346
PscI ACATGT 1 cut(s) 278
PsiI TTATAA 1 cut(s) 402
PspPI GGNCC 1 cut(s) 233
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 4 cut(s) 226, 229, 232, 345
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 1 cut(s) 233
SetI ASST 3 cut(s) 96, 266, 372
SfaNI GCATC 1 cut(s) 175
Sse9I AATT 4 cut(s) 286, 372, 381, 403
SsiI CCGC 2 cut(s) 228, 231
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 3 cut(s) 66, 75, 81
TasI AATT 4 cut(s) 286, 372, 381, 403
TauI GCSGC 2 cut(s) 231, 234
TfiI GAWTC 2 cut(s) 26, 107
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 2 cut(s) 154, 325
TseI GCWGC 2 cut(s) 225, 344
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 2 cut(s) 154, 325
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.