Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008081

Physical Location & Seq

Genomic Coordinates Reverse (-)

3501733 .. 3504138

Gene Structure 2406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05780.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAAGGAGAAGACAACGTATTGGATGCAGTATTTGAAGATGATGACTTCATGGATGGTGGGGATGTTGAGATGCTCGATGTCGAAGAAGGAGAGCTTGTGGATTTCAATTCACAAAGTGGGTATGGTTCGGGGCAGGGCAGTGGTGGCAATGTCAGTGTAGCAAACCAAGAACGTCAGGGCCCGAATCAGAAGCCCAAGCCAAAGACGAAGAAAAAGAAGAACAAGAAGAGGAATAACGGCCATTGGACTGCGAGTATTGGGACTGACATTGACAGGTTTGTGATAGAGACATGTAAGCGACTGAAGGAGAGGAAATCGTATTTGGTATATACTGCTGTTGGTTGCTTGGGTATTGCTGCATTGAGTGATCTCATTAAAGAGGTGGATGCAATCCAGGCATGCGGAGGTCAGATGACTTCTGATGGCAGACGTTTCCGATATGGTGGTGGGATACTTTGGAATATCATTAAATCACGCGAACCAAAGGCCTATAGAGAGATAATGAAAAAAGCAAGGGACTTTGAGAAGCAATTCAAGAAACCAAATAGACCAGCAATAGAGCAAAGGAAAGAAGGCTCATCTGCCAATTCATCCAAGGATGGTACCCCAGCCAATGTGTCGGATGATTTACCGGTCCTACATGAACTGCAGACTCAAGCCAATCAGTCAAACCCCGAAGTGAAACACGTTTCTGTTCGTGATAGGTTAAGGTTGCCTGTTTCATATGATGATGACCTGCTTGGAGGGGAGCCCAAAGACGATCCACTTAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RNA_GG_bind

Protein Analysis

260

Amino Acids

28.74

Weight (kDa)

5.8

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20430
fragaria_vesca	FvH4_2g32180 FvH4_2g32180 FvH4_2g32180
prunus_persica	Prupe.1G414900_v2.0.a1 Prupe.1G414900_v2.0.a1 Prupe.1G414900_v2.0.a1
pyrus_communis	pycom15g05780
rosa_chinensis	RchiOBHm_Chr6g0310491 RchiOBHm_Chr6g0310501
rosa_laevigata	RLG00000010478 RLG00000015866
rosa_multiflora	Rmu_co8215328.1_g000001 Rmu_sc0014388.1_g000001 Rmu_sc0016392.1_g000007 Rmu_sc0020729.1_g000004 Rmu_sc0035020.1_g000003
rosa_roxburghii	Rroxscaffold_7G00158480
rosa_rugosa	Rorug06G0380800
rosa_samantha	Rh6AG494900 Rh6BG504500 Rh6CG509800 Rh6DG495800
rosa_wichuraiana	Rw6G043040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	747
Acc65I	GGTACC	1 cut(s)	605
AccB1I	GGYRCC	1 cut(s)	605
AccII	CGCG	1 cut(s)	480
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	1 cut(s)	758
AcoI	YGGCCR	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	119
AfaI	GTAC	1 cut(s)	607
AflIII	ACRYGT	2 cut(s)	293, 688
AgeI	ACCGGT	1 cut(s)	634
AgsI	TTSAA	3 cut(s)	38, 109, 538
AjnI	CCWGG	1 cut(s)	396
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	758
AoxI	GGCC	3 cut(s)	181, 241, 489
ApaI	GGGCCC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	359
AsiGI	ACCGGT	1 cut(s)	634
Asp700I	GAANNNNTTC	1 cut(s)	533
Asp718I	GGTACC	1 cut(s)	605
AspS9I	GGNCC	3 cut(s)	181, 182, 637
AvaII	GGWCC	1 cut(s)	637
BaeGI	GKGCMC	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	2 cut(s)	185, 756
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	3 cut(s)	50, 419, 596
BceAI	ACGGC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	284
BfmI	CTRYAG	2 cut(s)	493, 650
BfuAI	ACCTGC	1 cut(s)	747
BfuI	GTATCC	1 cut(s)	447
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	1 cut(s)	637
BmgT120I	GGNCC	3 cut(s)	181, 182, 637
BmiI	GGNNCC	3 cut(s)	183, 607, 753
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	3 cut(s)	16, 63, 379
BpiI	GAAGAC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	1 cut(s)	634
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bse118I	RCCGGY	1 cut(s)	634
Bse3DI	GCAATG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	7 cut(s)	31, 61, 70, 394, 593, 607, 631
BseMI	GCAATG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	610
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	3 cut(s)	183, 243, 491
BshNI	GGYRCC	1 cut(s)	605
BshTI	ACCGGT	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	635
BslFI	GGGAC	2 cut(s)	277, 533
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	2 cut(s)	277, 533
BsnI	GGCC	3 cut(s)	183, 243, 491
Bsp120I	GGGCCC	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	185, 756
Bsp143I	GATC	2 cut(s)	370, 763
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	3 cut(s)	183, 243, 491
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	3 cut(s)	183, 607, 753
BspMAI	CTGCAG	1 cut(s)	654
BspMI	ACCTGC	1 cut(s)	747
BspPI	GGATC	1 cut(s)	758
BspT107I	GGYRCC	1 cut(s)	605
BsrDI	GCAATG	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	634
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	2 cut(s)	370, 763
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	403
BstF5I	GGATG	7 cut(s)	31, 61, 70, 394, 593, 607, 631
BstFNI	CGCG	1 cut(s)	480
BstKTI	GATC	2 cut(s)	373, 766
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	2 cut(s)	370, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 398
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	2 cut(s)	297, 405
BstSCI	CCNGG	1 cut(s)	396
BstSFI	CTRYAG	2 cut(s)	493, 650
BstSLI	GKGCMC	1 cut(s)	185
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	346
BstV2I	GAAGAC	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	3 cut(s)	183, 243, 491
BtsCI	GGATG	7 cut(s)	31, 61, 70, 394, 593, 607, 631
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	148, 163
BveI	ACCTGC	1 cut(s)	747
Cac8I	GCNNGC	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	634
Cfr13I	GGNCC	3 cut(s)	181, 182, 637
Csp6I	GTAC	1 cut(s)	606
CspAI	ACCGGT	1 cut(s)	634
CviAII	CATG	4 cut(s)	52, 294, 402, 644
CviQI	GTAC	1 cut(s)	606
DpnI	GATC	2 cut(s)	372, 765
DpnII	GATC	2 cut(s)	370, 763
DraIII	CACNNNGTG	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	597
Eco147I	AGGCCT	1 cut(s)	491
Eco24I	GRGCYC	2 cut(s)	185, 756
Eco47I	GGWCC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	597
EcoT38I	GRGCYC	2 cut(s)	185, 756
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	4 cut(s)	55, 297, 405, 647
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	2 cut(s)	277, 533
FatI	CATG	4 cut(s)	51, 293, 401, 643
FauNDI	CATATG	1 cut(s)	727
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	7 cut(s)	38, 68, 77, 401, 580, 614, 638
FriOI	GRGCYC	2 cut(s)	185, 756
Fsp4HI	GCNGC	1 cut(s)	360
GluI	GCNGC	1 cut(s)	360
GsaI	CCCAGC	1 cut(s)	614
HaeIII	GGCC	3 cut(s)	183, 243, 491
HapII	CCGG	1 cut(s)	635
Hin1II	CATG	4 cut(s)	55, 297, 405, 647
HinfI	GANTC	2 cut(s)	187, 655
HpaII	CCGG	1 cut(s)	635
Hpy188I	TCNGA	5 cut(s)	192, 414, 424, 440, 625
Hpy188III	TCNNGA	2 cut(s)	538, 701
HpyAV	CCTTC	3 cut(s)	83, 301, 569
HpyCH4IV	ACGT	4 cut(s)	18, 175, 433, 690
HpyCH4V	TGCA	4 cut(s)	29, 362, 392, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 398
HpySE526I	ACGT	4 cut(s)	18, 175, 433, 690
Hsp92II	CATG	4 cut(s)	55, 297, 405, 647
KpnI	GGTACC	1 cut(s)	609
Kzo9I	GATC	2 cut(s)	370, 763
LmnI	GCTCC	1 cut(s)	751
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	3 cut(s)	16, 63, 379
MaeII	ACGT	4 cut(s)	18, 175, 433, 690
MalI	GATC	2 cut(s)	372, 765
MboI	GATC	2 cut(s)	370, 763
MboII	GAAGA	6 cut(s)	23, 50, 98, 223, 232, 241
MhlI	GDGCHC	2 cut(s)	185, 756
MluCI	AATT	4 cut(s)	109, 533, 589, 772
MlyI	GAGTC	1 cut(s)	649
MmeI	TCCRAC	1 cut(s)	603
MnlI	CCTC	5 cut(s)	225, 306, 376, 401, 740
MroXI	GAANNNNTTC	1 cut(s)	533
MseI	TTAA	4 cut(s)	378, 471, 710, 771
MspI	CCGG	1 cut(s)	635
MspR9I	CCNGG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	147, 398
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	2 cut(s)	370, 763
NlaIII	CATG	4 cut(s)	55, 297, 405, 647
NlaIV	GGNNCC	3 cut(s)	183, 607, 753
NspI	RCATGY	2 cut(s)	297, 405
PaeI	GCATGC	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	491
PciI	ACATGT	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	1 cut(s)	187
PinAI	ACCGGT	1 cut(s)	634
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	649
PpsI	GAGTC	1 cut(s)	649
PscI	ACATGT	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	396
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	183, 607, 753
PspOMI	GGGCCC	1 cut(s)	181
PspPI	GGNCC	3 cut(s)	181, 182, 637
PstI	CTGCAG	1 cut(s)	654
RsaI	GTAC	1 cut(s)	607
RsaNI	GTAC	1 cut(s)	606
SaqAI	TTAA	4 cut(s)	378, 471, 710, 771
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	2 cut(s)	370, 763
Sau96I	GGNCC	3 cut(s)	181, 182, 637
SchI	GAGTC	1 cut(s)	649
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	2 cut(s)	185, 756
SfaNI	GCATC	3 cut(s)	16, 63, 379
SfcI	CTRYAG	2 cut(s)	493, 650
SinI	GGWCC	1 cut(s)	637
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
SphI	GCATGC	1 cut(s)	405
Sse9I	AATT	4 cut(s)	109, 533, 589, 772
SseBI	AGGCCT	1 cut(s)	491
SsiI	CCGC	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	491
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	597
TaiI	ACGT	4 cut(s)	21, 178, 436, 693
TaqI	TCGA	2 cut(s)	78, 84
TasI	AATT	4 cut(s)	109, 533, 589, 772
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	4 cut(s)	378, 471, 710, 771
Tru9I	TTAA	4 cut(s)	378, 471, 710, 771
TscAI	CASTG	2 cut(s)	148, 163
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	5 cut(s)	40, 521, 582, 660, 714
TspRI	CASTG	2 cut(s)	148, 163
VpaK11BI	GGWCC	1 cut(s)	637
XceI	RCATGY	2 cut(s)	297, 405
XmnI	GAANNNNTTC	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.