FvH4_2g33440

Pumilio homolog 12-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
25083139 .. 25086844
3706 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33440.t3

Sequence Viewer

Length: 1323 bp
ATGGAGGGTTTCGGCTACTTCACCGATACGACGTCGCAGACCCCTTCTTCTTATTCCGATCAATCCCTAGAATCCGCTTTCTCTCGCCTCAACGTCTCCTCCTTCAGCCAGCCGCCGTTTTCCGGCGTCGGTTACAGCTCCGGTCCGGCGCCGAAATACCCATCACGCCGCAATGAGCCCACTTTTCTTGATGATGGGGTTCTTGGTCGTTTGGGTCTAGAAGACTGCTGGGTTGGTGGCTCTGGTACTGATCATGGCTTTGGTGGGTTTGGTTCGAATTCAAATTCGAATTTACACTCTGACATTGCCACAAATTGGTCCCAAGAACCACTGAACAGCTTGTCTGTGGCGGATTTGCGAGGAAAGATTGCGTCTTTGGCGAAGGATCAATACGGGTGTCGGTTCTTTCAGAAAGCCATGGATGATGAGCCCAAGGAGTTTACAGATATGATATTTGCAGAGGTGGTGGAGAATGTGGGGCATTTGATGCTCGACCCGTATGGAAATTATGTGGTGCAGAAGCTTGTGGAGGTCTGCAGTGAGGAGCAGAGGACCCAGATTCTGTTGAGGTTGACCAAGAATCCGTTTCTGTTCATCACTCTCTGCCTTCATAGCCGTGGGACTCGGTCTGTTCAGAAACTGATGAAGAAGATCAGTACCCGAGATCAAATTTCTTTGTTTGTGAGTGCACTAAGCTGTGGTGTGGTTGACCTCAGTATGAACATAAATGGTCAACACATTATAGAATACTGCCTGAAGAACTTCGCAGACAAACACAAAAGGTGTCTTCTGAACGTGATGATTGACAACTGTATTAGCATTGCAAAAGATAAGGTCGGTTGTTGCGTGCTACAACAGTGTATCGATTACTGTTATGGAGAAACAAGAGGACGTTTGATTGCTGCTATAATTGGAGAAGCATTAAGCCTAGCACAAGATCGTTATGGAAACTATGTGCTGCAACATTTACTTGGGTTAAAGACACCTCAAGTCACATCATCTCTTCTGAGACAGTTTCAAGGGAATTATATGTTTCTCTCCTGCGGCAAATATGGTAGTAATGTTGTGGAGAAGTGCTTGTTAGAGTCAGAAGAGGAACAGTCTGCCGATATTATTAGAGAGTTGTGTATAAGTCCGAACCTTTCAATGCTTCTTATGCATCCTTTTGGAAACTATGTCTTCCAGACCGCACTGTCAGTTTCTAAGGGTCTCGCCCATGCTTTTCTCTTAAATCTGGTTCAACAATACACTCCTGCTTTGCTCAGCAATCAATATGGAAAAAGGGTGCTTGCTTGGCGTGAAAGGAGCTTGCGACGTATGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

441

Amino Acids

49.07

Weight (kDa)

6.75

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUF PF00806 123 - 155 6.7e-08 Pumilio-family RNA binding repeat
PUF PF00806 158 - 189 3.3e-11 Pumilio-family RNA binding repeat
PUF PF00806 270 - 304 7e-11 Pumilio-family RNA binding repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1192
AatII GACGTC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 148
AccB7I CCANNNNNTGG 1 cut(s) 315
AciI CCGC 6 cut(s) 75, 113, 169, 350, 1044, 1188
AclWI GGATC 1 cut(s) 393
AcsI RAATTY 4 cut(s) 277, 283, 289, 669
AcuI CTGAAG 2 cut(s) 88, 776
AcyI GRCGYC 3 cut(s) 32, 126, 149
AfaI GTAC 2 cut(s) 247, 658
AfiI CCNNNNNNNGG 2 cut(s) 122, 315
AgsI TTSAA 4 cut(s) 282, 1019, 1146, 1241
AluBI AGCT 5 cut(s) 138, 339, 523, 696, 1308
AluI AGCT 5 cut(s) 138, 339, 523, 696, 1308
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 3 cut(s) 100, 1003, 1214
Alw44I GTGCAC 1 cut(s) 687
AlwI GGATC 1 cut(s) 393
AlwNI CAGNNNCTG 2 cut(s) 562, 640
Ama87I CYCGRG 1 cut(s) 660
ApaLI GTGCAC 1 cut(s) 687
ApeKI GCWGC 2 cut(s) 902, 958
ApoI RAATTY 4 cut(s) 277, 283, 289, 669
Asp700I GAANNNNTTC 1 cut(s) 761
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 3 cut(s) 143, 318, 552
AsuHPI GGTGA 1 cut(s) 13
AsuII TTCGAA 2 cut(s) 275, 287
AvaI CYCGRG 1 cut(s) 660
AvaII GGWCC 3 cut(s) 143, 318, 552
BaeGI GKGCMC 1 cut(s) 691
BanI GGYRCC 1 cut(s) 148
BanII GRGCYC 2 cut(s) 180, 432
BarI GAAGNNNNNNTAC 2 cut(s) 374, 406
BbsI GAAGAC 3 cut(s) 228, 779, 1171
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 2 cut(s) 889, 945
BccI CCATC 2 cut(s) 169, 188
BceAI ACGGC 2 cut(s) 100, 600
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 3 cut(s) 100, 1003, 1214
BfaI CTAG 3 cut(s) 68, 218, 929
BfmI CTRYAG 1 cut(s) 535
BfoI RGCGCY 1 cut(s) 152
BisI GCNGC 5 cut(s) 113, 169, 903, 959, 1045
BlpI GCTNAGC 1 cut(s) 1262
BlsI GCNGC 5 cut(s) 114, 170, 904, 960, 1046
Bme18I GGWCC 3 cut(s) 143, 318, 552
BmeT110I CYCGRG 1 cut(s) 660
BmgT120I GGNCC 3 cut(s) 143, 318, 552
BmiI GGNNCC 3 cut(s) 150, 320, 554
BmsI GCATC 2 cut(s) 477, 1168
BpiI GAAGAC 3 cut(s) 228, 779, 1171
Bpu1102I GCTNAGC 1 cut(s) 1262
Bpu14I TTCGAA 2 cut(s) 275, 287
BpuEI CTTGAG 1 cut(s) 972
Bsa29I ATCGAT 1 cut(s) 864
BsaHI GRCGYC 3 cut(s) 32, 126, 149
BsaI GGTCTC 1 cut(s) 1214
BsaJI CCNNGG 3 cut(s) 417, 432, 616
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 315
Bse3DI GCAATG 3 cut(s) 178, 303, 819
BseCI ATCGAT 1 cut(s) 864
BseDI CCNNGG 3 cut(s) 417, 432, 616
BseGI GGATG 2 cut(s) 427, 1159
BseLI CCNNNNNNNGG 2 cut(s) 122, 315
BseMI GCAATG 3 cut(s) 178, 303, 819
BseMII CTCAG 3 cut(s) 727, 998, 1276
BseRI GAGGAG 2 cut(s) 88, 557
BseSI GKGCMC 1 cut(s) 691
BseXI GCAGC 2 cut(s) 889, 945
BseYI CCCAGC 1 cut(s) 228
BsgI GTGCAG 1 cut(s) 536
BshNI GGYRCC 1 cut(s) 148
BshVI ATCGAT 1 cut(s) 864
BsiHKAI GWGCWC 1 cut(s) 691
BsiHKCI CYCGRG 1 cut(s) 660
BsiSI CCGG 3 cut(s) 123, 141, 146
BslFI GGGAC 2 cut(s) 304, 634
BslI CCNNNNNNNGG 2 cut(s) 122, 315
BsmAI GTCTC 3 cut(s) 100, 1003, 1214
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 2 cut(s) 304, 634
Bso31I GGTCTC 1 cut(s) 1214
BsoBI CYCGRG 1 cut(s) 660
Bsp119I TTCGAA 2 cut(s) 275, 287
Bsp1286I GDGCHC 3 cut(s) 180, 432, 691
Bsp143I GATC 6 cut(s) 58, 250, 385, 651, 664, 937
Bsp1720I GCTNAGC 1 cut(s) 1262
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 6 cut(s) 75, 113, 169, 350, 1044, 1188
BspCNI CTCAG 3 cut(s) 726, 999, 1275
BspDI ATCGAT 1 cut(s) 864
BspLI GGNNCC 3 cut(s) 150, 320, 554
BspMAI CTGCAG 1 cut(s) 539
BspPI GGATC 1 cut(s) 393
BspT104I TTCGAA 2 cut(s) 275, 287
BspT107I GGYRCC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 1214
BsrDI GCAATG 3 cut(s) 178, 303, 819
BssECI CCNNGG 3 cut(s) 417, 432, 616
BssMI GATC 6 cut(s) 58, 250, 385, 651, 664, 937
BssNI GRCGYC 3 cut(s) 32, 126, 149
BssT1I CCWWGG 2 cut(s) 417, 432
Bst4CI ACNGT 6 cut(s) 812, 858, 872, 1014, 1101, 1194
Bst6I CTCTTC 2 cut(s) 1008, 1086
BstACI GRCGYC 3 cut(s) 32, 126, 149
BstAPI GCANNNNNTGC 1 cut(s) 487
BstBI TTCGAA 2 cut(s) 275, 287
BstC8I GCNNGC 4 cut(s) 110, 848, 1290, 1310
BstDEI CTNAG 5 cut(s) 692, 713, 1007, 1203, 1262
BstDSI CCRYGG 2 cut(s) 417, 616
BstF5I GGATG 2 cut(s) 427, 1159
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 6 cut(s) 61, 253, 388, 654, 667, 940
BstMAI GTCTC 3 cut(s) 100, 1003, 1214
BstMBI GATC 6 cut(s) 58, 250, 385, 651, 664, 937
BstMWI GCNNNNNNNGC 5 cut(s) 377, 487, 612, 1156, 1294
BstSFI CTRYAG 1 cut(s) 535
BstSLI GKGCMC 1 cut(s) 691
BstV1I GCAGC 2 cut(s) 889, 945
BstV2I GAAGAC 3 cut(s) 228, 779, 1171
Bsu15I ATCGAT 1 cut(s) 864
BsuTUI ATCGAT 1 cut(s) 864
BtgI CCRYGG 2 cut(s) 417, 616
BtsCI GGATG 2 cut(s) 427, 1159
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 4 cut(s) 329, 544, 863, 1190
Cac8I GCNNGC 4 cut(s) 110, 848, 1290, 1310
CaiI CAGNNNCTG 2 cut(s) 562, 640
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 3 cut(s) 143, 318, 552
ClaI ATCGAT 1 cut(s) 864
CpoI CGGWCCG 1 cut(s) 143
CseI GACGC 2 cut(s) 115, 360
Csp6I GTAC 2 cut(s) 246, 657
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CspI CGGWCCG 1 cut(s) 143
CviAII CATG 3 cut(s) 254, 418, 1217
CviQI GTAC 2 cut(s) 246, 657
DdeI CTNAG 5 cut(s) 692, 713, 1007, 1203, 1262
DinI GGCGCC 1 cut(s) 150
DpnI GATC 6 cut(s) 60, 252, 387, 653, 666, 939
DpnII GATC 6 cut(s) 58, 250, 385, 651, 664, 937
DrdI GACNNNNNNGTC 1 cut(s) 1192
DseDI GACNNNNNNGTC 1 cut(s) 1192
Eam1104I CTCTTC 2 cut(s) 1008, 1086
EarI CTCTTC 2 cut(s) 1008, 1086
EciI GGCGGA 1 cut(s) 365
Eco130I CCWWGG 2 cut(s) 417, 432
Eco24I GRGCYC 2 cut(s) 180, 432
Eco31I GGTCTC 1 cut(s) 1214
Eco47I GGWCC 3 cut(s) 143, 318, 552
Eco57I CTGAAG 2 cut(s) 88, 776
Eco88I CYCGRG 1 cut(s) 660
EcoO109I RGGNCCY 1 cut(s) 552
EcoRI GAATTC 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 417, 432
EcoT22I ATGCAT 1 cut(s) 1161
EcoT38I GRGCYC 2 cut(s) 180, 432
EgeI GGCGCC 1 cut(s) 150
EheI GGCGCC 1 cut(s) 150
ErhI CCWWGG 2 cut(s) 417, 432
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 3 cut(s) 257, 421, 1220
FaqI GGGAC 2 cut(s) 304, 634
FatI CATG 3 cut(s) 253, 417, 1216
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 5 cut(s) 113, 169, 903, 959, 1045
FokI GGATG 2 cut(s) 434, 1146
FriOI GRGCYC 2 cut(s) 180, 432
Fsp4HI GCNGC 5 cut(s) 113, 169, 903, 959, 1045
FspBI CTAG 3 cut(s) 68, 218, 929
GlaI GCGC 1 cut(s) 150
GluI GCNGC 5 cut(s) 113, 169, 903, 959, 1045
GsaI CCCAGC 1 cut(s) 232
HaeII RGCGCY 1 cut(s) 152
HapII CCGG 3 cut(s) 123, 141, 146
HgaI GACGC 2 cut(s) 115, 360
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 3 cut(s) 32, 126, 149
Hin1II CATG 3 cut(s) 257, 421, 1220
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 3 cut(s) 573, 709, 734
HindII GTYRAC 3 cut(s) 573, 709, 734
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 5 cut(s) 71, 559, 580, 622, 1085
HpaII CCGG 3 cut(s) 123, 141, 146
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 5 cut(s) 441, 573, 689, 709, 734
Hpy188I TCNGA 8 cut(s) 58, 301, 411, 636, 792, 1008, 1090, 1137
Hpy188III TCNNGA 3 cut(s) 188, 218, 1183
Hpy8I GTNNAC 5 cut(s) 441, 573, 689, 709, 734
Hpy99I CGWCG 4 cut(s) 34, 37, 131, 1317
HpyAV CCTTC 4 cut(s) 54, 112, 376, 617
HpyCH4III ACNGT 6 cut(s) 812, 858, 872, 1014, 1101, 1194
HpyCH4IV ACGT 5 cut(s) 32, 93, 795, 892, 1315
HpyCH4V TGCA 7 cut(s) 458, 517, 537, 689, 824, 961, 1159
HpyF10VI GCNNNNNNNGC 5 cut(s) 377, 487, 612, 1156, 1294
HpyF3I CTNAG 5 cut(s) 692, 713, 1007, 1203, 1262
HpySE526I ACGT 5 cut(s) 32, 93, 795, 892, 1315
Hsp92I GRCGYC 3 cut(s) 32, 126, 149
Hsp92II CATG 3 cut(s) 257, 421, 1220
HspAI GCGC 1 cut(s) 149
KasI GGCGCC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 6 cut(s) 58, 250, 385, 651, 664, 937
LmnI GCTCC 3 cut(s) 143, 544, 1305
Lsp1109I GCAGC 2 cut(s) 889, 945
LweI GCATC 2 cut(s) 477, 1168
MaeI CTAG 3 cut(s) 68, 218, 929
MaeII ACGT 5 cut(s) 32, 93, 795, 892, 1315
MaeIII GTNAC 2 cut(s) 131, 991
MalI GATC 6 cut(s) 60, 252, 387, 653, 666, 939
MboI GATC 6 cut(s) 58, 250, 385, 651, 664, 937
MboII GAAGA 9 cut(s) 39, 233, 658, 661, 769, 779, 995, 1103, 1171
MhlI GDGCHC 3 cut(s) 180, 432, 691
MluCI AATT 8 cut(s) 277, 283, 289, 313, 505, 669, 909, 1024
Mly113I GGCGCC 1 cut(s) 149
MlyI GAGTC 2 cut(s) 616, 1094
Mph1103I ATGCAT 1 cut(s) 1161
MroXI GAANNNNTTC 1 cut(s) 761
MseI TTAA 3 cut(s) 923, 977, 1229
MslI CAYNNNNRTG 1 cut(s) 615
MspI CCGG 3 cut(s) 123, 141, 146
MwoI GCNNNNNNNGC 5 cut(s) 377, 487, 612, 1156, 1294
NarI GGCGCC 1 cut(s) 149
NcoI CCATGG 1 cut(s) 417
NdeII GATC 6 cut(s) 58, 250, 385, 651, 664, 937
NlaIII CATG 3 cut(s) 257, 421, 1220
NlaIV GGNNCC 3 cut(s) 150, 320, 554
NmuCI GTSAC 1 cut(s) 991
NsiI ATGCAT 1 cut(s) 1161
NspV TTCGAA 2 cut(s) 275, 287
PcsI WCGNNNNNNNCGW 1 cut(s) 843
PdmI GAANNNNTTC 1 cut(s) 761
PfeI GAWTC 3 cut(s) 71, 559, 580
PflFI GACNNNGTC 1 cut(s) 625
PflMI CCANNNNNTGG 1 cut(s) 315
PkrI GCNGC 5 cut(s) 114, 170, 904, 960, 1046
PleI GAGTC 2 cut(s) 616, 1093
PluTI GGCGCC 1 cut(s) 152
PpsI GAGTC 2 cut(s) 616, 1093
PpuMI RGGWCCY 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 228
PspN4I GGNNCC 3 cut(s) 150, 320, 554
PspPI GGNCC 3 cut(s) 143, 318, 552
PspPPI RGGWCCY 1 cut(s) 552
PstI CTGCAG 1 cut(s) 539
PstNI CAGNNNCTG 2 cut(s) 562, 640
PsyI GACNNNGTC 1 cut(s) 625
RsaI GTAC 2 cut(s) 247, 658
RsaNI GTAC 2 cut(s) 246, 657
RseI CAYNNNNRTG 1 cut(s) 615
Rsr2I CGGWCCG 1 cut(s) 143
RsrII CGGWCCG 1 cut(s) 143
SaqAI TTAA 3 cut(s) 923, 977, 1229
SatI GCNGC 5 cut(s) 113, 169, 903, 959, 1045
Sau3AI GATC 6 cut(s) 58, 250, 385, 651, 664, 937
Sau96I GGNCC 3 cut(s) 143, 318, 552
SchI GAGTC 2 cut(s) 616, 1094
SduI GDGCHC 3 cut(s) 180, 432, 691
SfaNI GCATC 2 cut(s) 477, 1168
SfcI CTRYAG 1 cut(s) 535
SfoI GGCGCC 1 cut(s) 150
SfuI TTCGAA 2 cut(s) 275, 287
SinI GGWCC 3 cut(s) 143, 318, 552
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 1 cut(s) 987
SmoI CTYRAG 1 cut(s) 987
Sse9I AATT 8 cut(s) 277, 283, 289, 313, 505, 669, 909, 1024
SsiI CCGC 6 cut(s) 75, 113, 169, 350, 1044, 1188
SspDI GGCGCC 1 cut(s) 148
SspMI CTAG 3 cut(s) 68, 218, 929
StyI CCWWGG 2 cut(s) 417, 432
TaaI ACNGT 6 cut(s) 812, 858, 872, 1014, 1101, 1194
TaiI ACGT 5 cut(s) 35, 96, 798, 895, 1318
TaqI TCGA 4 cut(s) 275, 287, 492, 864
TaqII GACCGA 1 cut(s) 615
TasI AATT 8 cut(s) 277, 283, 289, 313, 505, 669, 909, 1024
TauI GCSGC 3 cut(s) 115, 171, 1047
TfiI GAWTC 3 cut(s) 71, 559, 580
Tru1I TTAA 3 cut(s) 923, 977, 1229
Tru9I TTAA 3 cut(s) 923, 977, 1229
TscAI CASTG 4 cut(s) 336, 544, 863, 1197
TseFI GTSAC 1 cut(s) 991
TseI GCWGC 2 cut(s) 902, 958
Tsp45I GTSAC 1 cut(s) 991
TspDTI ATGAA 4 cut(s) 583, 599, 659, 734
TspGWI ACGGA 1 cut(s) 573
TspRI CASTG 4 cut(s) 336, 544, 863, 1197
Tth111I GACNNNGTC 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 315
VneI GTGCAC 1 cut(s) 687
VpaK11BI GGWCC 3 cut(s) 143, 318, 552
XapI RAATTY 4 cut(s) 277, 283, 289, 669
XbaI TCTAGA 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 761
XspI CTAG 3 cut(s) 68, 218, 929
ZraI GACGTC 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.