Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012331.1

Orthogroup ID

OG0009606

Physical Location & Seq

Genomic Coordinates Reverse (-)

1927 .. 4294

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atggagggtttccgatactttaccgatacgacgtcgcagaaccctattccctatgatcaatccctagaagctgctttctctcgcctgaatgtctcatccttcagccagccgccgccgctttccggcgccgataacagttctgggtcggcgccgaaatacccatcacgccgcaatgaactcatgccgggtggttttgatggtggggtttttggtcatttgggtcttgaagattgctgggttggctcagatactgatcatggcttaggtgggtttggttctagtttacataaaccatctgattggtcccaagaaccactcaacagcttatctgtggctgatttgcgtggaaagattgcttctttgtccatggaccaatacgggtgtcgcttctttcagagagctatggaggatgagccgaaagagttcactgatatgatatttgaagaggttgtagaccatgtggcccatttgattctggacccttatggcaactatgttgttcagaagcttgtggaggtttgtagtgaggagcagaggacacagattctgttaatgtggaccaagaatccgttccattttattactctttgccttcatagccgtgggactcgctctgttctgaaactgttgaagaaaatcactacccgagagcaaatctctgtgtttgtgagtgctctaagctgtggtgctgttgacctgactatgaacatcaatggtcaacatatcatggaatattgcttgaaaaacttttcggatgaacacaaaaggtgtcttctgaatgtggtgatcgacaactgtattggaattgcaaaagataaggttggttgttgcgtgctacagcagtgtgttgattactgttatggagaaacaaaaggacgtctaattgctgcgataatagaagacgcattaatcctggcgcaggatcgttatgggtttgttcctatgaaactatatcaatacttctcttgcagtttgatcatgacctttactctgatgattttaattcaatgtgatattttcttttcattccttagcaactatgtgctgcaacatttactcgggttgagggcaccacaagtcacatcaaatcttctgagacagtttcaagggaattatatgtttctctcctgcagcaagtatggtagtaatgttgtggagaagtgcttgttagagtcaggagaagagcagtctgcagaaattattagagagttgtgtagaagcccaaatctttcaatgcttcttatgcatcctttcggaaattatgtcttccagacggcattgtcagtttccaaggttgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF

Protein Analysis

433

Amino Acids

48.61

Weight (kDa)

5.59

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08840
fragaria_vesca	FvH4_2g33440 FvH4_2g33440 FvH4_2g33440
malus_domestica	MD08G1089500.v1.1 MD15G1074100.v1.1
prunus_persica	Prupe.1G426900_v2.0.a1 Prupe.1G426900_v2.0.a1 Prupe.1G426900_v2.0.a1
pyrus_communis	pycom08g07280 pycom15g06930
rosa_chinensis	RchiOBHm_Chr6g0309091
rosa_laevigata	RLG00000010590
rosa_multiflora	Rmu_sc0012331.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037870 Rroxscaffold_2G00124690
rosa_rugosa	Rorug06G0369700
rosa_samantha	Rh6AG482400 Rh6BG491400 Rh6CG496200 Rh6DG483100
rosa_wichuraiana	Rw6G042000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1279
AatII	GACGTC	2 cut(s)	35, 880
AccB1I	GGYRCC	3 cut(s)	125, 148, 1069
AccI	GTMKAC	1 cut(s)	453
AciI	CCGC	4 cut(s)	110, 113, 116, 169
AclWI	GGATC	1 cut(s)	930
AcuI	CTGAAG	1 cut(s)	85
AcyI	GRCGYC	4 cut(s)	32, 126, 149, 877
AfiI	CCNNNNNNNGG	3 cut(s)	122, 919, 1296
AgsI	TTSAA	7 cut(s)	227, 443, 631, 742, 1007, 1106, 1233
AjnI	CCWGG	1 cut(s)	912
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
AluBI	AGCT	5 cut(s)	71, 324, 401, 508, 681
AluI	AGCT	5 cut(s)	71, 324, 401, 508, 681
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	2 cut(s)	97, 1090
AlwI	GGATC	1 cut(s)	930
AlwNI	CAGNNNCTG	2 cut(s)	251, 547
Ama87I	CYCGRG	2 cut(s)	645, 1058
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	4 cut(s)	71, 887, 1045, 1131
AseI	ATTAAT	1 cut(s)	908
Asp700I	GAANNNNTTC	2 cut(s)	422, 569
AspLEI	GCGC	3 cut(s)	128, 151, 919
AspS9I	GGNCC	5 cut(s)	303, 370, 463, 478, 558
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	796
AvaI	CYCGRG	2 cut(s)	645, 1058
AvaII	GGWCC	4 cut(s)	303, 370, 478, 558
BaeGI	GKGCMC	1 cut(s)	1072
BanI	GGYRCC	3 cut(s)	125, 148, 1069
BbsI	GAAGAC	3 cut(s)	764, 906, 1258
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	4 cut(s)	58, 874, 1032, 1143
BccI	CCATC	3 cut(s)	169, 191, 301
BceAI	ACGGC	2 cut(s)	585, 1290
BciT130I	CCWGG	1 cut(s)	914
BclI	TGATCA	3 cut(s)	55, 253, 975
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	97, 1090
BfaI	CTAG	2 cut(s)	65, 279
BfmI	CTRYAG	3 cut(s)	836, 1129, 1191
BfoI	RGCGCY	2 cut(s)	129, 152
BisI	GCNGC	8 cut(s)	72, 110, 113, 116, 169, 888, 1046, 1132
BlsI	GCNGC	8 cut(s)	73, 111, 114, 117, 170, 889, 1047, 1133
Bme1390I	CCNGG	2 cut(s)	186, 914
Bme18I	GGWCC	4 cut(s)	303, 370, 478, 558
BmeT110I	CYCGRG	2 cut(s)	645, 1058
BmgT120I	GGNCC	5 cut(s)	303, 370, 463, 478, 558
BmiI	GGNNCC	5 cut(s)	127, 150, 305, 480, 1071
BmrFI	CCNGG	2 cut(s)	186, 914
BmsI	GCATC	1 cut(s)	1255
BpiI	GAAGAC	3 cut(s)	764, 906, 1258
BplI	GAGNNNNNCTC	2 cut(s)	641, 673
Bpu10I	CCTNAGC	2 cut(s)	262, 1031
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	4 cut(s)	32, 126, 149, 877
BsaJI	CCNNGG	3 cut(s)	366, 601, 1290
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 919, 1296
Bse3DI	GCAATG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	914
BseDI	CCNNGG	3 cut(s)	366, 601, 1290
BseGI	GGATG	4 cut(s)	95, 415, 760, 1246
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	122, 919, 1296
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	258, 1085
BseRI	GAGGAG	1 cut(s)	542
BseSI	GKGCMC	1 cut(s)	1072
BseXI	GCAGC	4 cut(s)	58, 874, 1032, 1143
BseYI	CCCAGC	1 cut(s)	234
BshFI	GGCC	1 cut(s)	464
BshNI	GGYRCC	3 cut(s)	125, 148, 1069
BsiHKAI	GWGCWC	1 cut(s)	676
BsiHKCI	CYCGRG	2 cut(s)	645, 1058
BsiSI	CCGG	2 cut(s)	123, 185
BslFI	GGGAC	2 cut(s)	289, 619
BslI	CCNNNNNNNGG	3 cut(s)	122, 919, 1296
BsmAI	GTCTC	2 cut(s)	97, 1090
BsmFI	GGGAC	2 cut(s)	289, 619
BsnI	GGCC	1 cut(s)	464
BsoBI	CYCGRG	2 cut(s)	645, 1058
Bsp1286I	GDGCHC	2 cut(s)	676, 1072
Bsp143I	GATC	5 cut(s)	55, 253, 786, 922, 975
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	4 cut(s)	110, 113, 116, 169
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	2 cut(s)	257, 1086
BspHI	TCATGA	1 cut(s)	978
BspLI	GGNNCC	5 cut(s)	127, 150, 305, 480, 1071
BspMAI	CTGCAG	2 cut(s)	1133, 1195
BspPI	GGATC	1 cut(s)	930
BspQI	GCTCTTC	1 cut(s)	1176
BspT107I	GGYRCC	3 cut(s)	125, 148, 1069
BsrDI	GCAATG	1 cut(s)	178
BssECI	CCNNGG	3 cut(s)	366, 601, 1290
BssMI	GATC	5 cut(s)	55, 253, 786, 922, 975
BssNI	GRCGYC	4 cut(s)	32, 126, 149, 877
BssT1I	CCWWGG	2 cut(s)	366, 1290
Bst2UI	CCWGG	1 cut(s)	914
Bst4CI	ACNGT	5 cut(s)	137, 627, 797, 857, 1101
Bst6I	CTCTTC	2 cut(s)	438, 1176
BstACI	GRCGYC	4 cut(s)	32, 126, 149, 877
BstC8I	GCNNGC	2 cut(s)	107, 833
BstDEI	CTNAG	5 cut(s)	244, 262, 677, 1031, 1094
BstDSI	CCRYGG	2 cut(s)	366, 601
BstENI	CCTNNNNNAGG	1 cut(s)	917
BstF5I	GGATG	4 cut(s)	95, 415, 760, 1246
BstH2I	RGCGCY	2 cut(s)	129, 152
BstHHI	GCGC	3 cut(s)	128, 151, 919
BstKTI	GATC	5 cut(s)	58, 256, 789, 925, 978
BstMAI	GTCTC	2 cut(s)	97, 1090
BstMBI	GATC	5 cut(s)	55, 253, 786, 922, 975
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 240, 597, 1243
BstNI	CCWGG	1 cut(s)	914
BstSCI	CCNGG	2 cut(s)	184, 912
BstSFI	CTRYAG	3 cut(s)	836, 1129, 1191
BstSLI	GKGCMC	1 cut(s)	1072
BstV1I	GCAGC	4 cut(s)	58, 874, 1032, 1143
BstV2I	GAAGAC	3 cut(s)	764, 906, 1258
BstXI	CCANNNNNNTGG	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	464
BtgI	CCRYGG	2 cut(s)	366, 601
BtsCI	GGATG	4 cut(s)	95, 415, 760, 1246
BtsI	GCAGTG	1 cut(s)	848
BtsIMutI	CAGTG	2 cut(s)	426, 848
Cac8I	GCNNGC	2 cut(s)	107, 833
CaiI	CAGNNNCTG	2 cut(s)	251, 547
CciI	TCATGA	1 cut(s)	978
CfoI	GCGC	3 cut(s)	128, 151, 919
Cfr13I	GGNCC	5 cut(s)	303, 370, 463, 478, 558
CseI	GACGC	1 cut(s)	911
CviAII	CATG	6 cut(s)	181, 257, 367, 458, 727, 979
DdeI	CTNAG	5 cut(s)	244, 262, 677, 1031, 1094
DinI	GGCGCC	2 cut(s)	127, 150
DpnI	GATC	5 cut(s)	57, 255, 788, 924, 977
DpnII	GATC	5 cut(s)	55, 253, 786, 922, 975
DrdI	GACNNNNNNGTC	1 cut(s)	1279
DseDI	GACNNNNNNGTC	1 cut(s)	1279
Eam1104I	CTCTTC	2 cut(s)	438, 1176
EarI	CTCTTC	2 cut(s)	438, 1176
Eco130I	CCWWGG	2 cut(s)	366, 1290
Eco47I	GGWCC	4 cut(s)	303, 370, 478, 558
Eco57I	CTGAAG	1 cut(s)	85
Eco88I	CYCGRG	2 cut(s)	645, 1058
EcoNI	CCTNNNNNAGG	1 cut(s)	917
EcoRII	CCWGG	1 cut(s)	912
EcoT14I	CCWWGG	2 cut(s)	366, 1290
EcoT22I	ATGCAT	1 cut(s)	1248
EgeI	GGCGCC	2 cut(s)	127, 150
EheI	GGCGCC	2 cut(s)	127, 150
ErhI	CCWWGG	2 cut(s)	366, 1290
FaeI	CATG	6 cut(s)	184, 260, 370, 461, 730, 982
FaqI	GGGAC	2 cut(s)	289, 619
FatI	CATG	6 cut(s)	180, 256, 366, 457, 726, 978
FbaI	TGATCA	3 cut(s)	55, 253, 975
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	8 cut(s)	72, 110, 113, 116, 169, 888, 1046, 1132
FokI	GGATG	4 cut(s)	82, 422, 767, 1233
Fsp4HI	GCNGC	8 cut(s)	72, 110, 113, 116, 169, 888, 1046, 1132
FspBI	CTAG	2 cut(s)	65, 279
GlaI	GCGC	3 cut(s)	127, 150, 918
GluI	GCNGC	8 cut(s)	72, 110, 113, 116, 169, 888, 1046, 1132
GsaI	CCCAGC	1 cut(s)	238
HaeII	RGCGCY	2 cut(s)	129, 152
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	2 cut(s)	123, 185
HgaI	GACGC	1 cut(s)	911
HhaI	GCGC	3 cut(s)	128, 151, 919
Hin1I	GRCGYC	4 cut(s)	32, 126, 149, 877
Hin1II	CATG	6 cut(s)	184, 260, 370, 461, 730, 982
Hin6I	GCGC	3 cut(s)	126, 149, 917
HinP1I	GCGC	3 cut(s)	126, 149, 917
HincII	GTYRAC	2 cut(s)	694, 719
HindII	GTYRAC	2 cut(s)	694, 719
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	5 cut(s)	472, 544, 565, 607, 1172
HpaII	CCGG	2 cut(s)	123, 185
HphI	GGTGA	1 cut(s)	796
Hpy166II	GTNNAC	6 cut(s)	284, 426, 454, 558, 694, 719
Hpy188III	TCNNGA	5 cut(s)	224, 476, 979, 1176, 1270
Hpy8I	GTNNAC	6 cut(s)	284, 426, 454, 558, 694, 719
Hpy99I	CGWCG	2 cut(s)	34, 37
HpyAV	CCTTC	2 cut(s)	109, 602
HpyCH4III	ACNGT	5 cut(s)	137, 627, 797, 857, 1101
HpyCH4IV	ACGT	2 cut(s)	32, 877
HpyCH4V	TGCA	6 cut(s)	809, 969, 1048, 1131, 1193, 1246
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 240, 597, 1243
HpyF3I	CTNAG	5 cut(s)	244, 262, 677, 1031, 1094
HpySE526I	ACGT	2 cut(s)	32, 877
Hsp92I	GRCGYC	4 cut(s)	32, 126, 149, 877
Hsp92II	CATG	6 cut(s)	184, 260, 370, 461, 730, 982
HspAI	GCGC	3 cut(s)	126, 149, 917
KasI	GGCGCC	2 cut(s)	125, 148
Ksp22I	TGATCA	3 cut(s)	55, 253, 975
Kzo9I	GATC	5 cut(s)	55, 253, 786, 922, 975
LguI	GCTCTTC	1 cut(s)	1176
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	4 cut(s)	58, 874, 1032, 1143
LweI	GCATC	1 cut(s)	1255
MaeI	CTAG	2 cut(s)	65, 279
MaeII	ACGT	2 cut(s)	32, 877
MaeIII	GTNAC	1 cut(s)	1078
MalI	GATC	5 cut(s)	57, 255, 788, 924, 977
MboI	GATC	5 cut(s)	55, 253, 786, 922, 975
MboII	GAAGA	8 cut(s)	239, 455, 643, 764, 911, 1082, 1193, 1258
MhlI	GDGCHC	2 cut(s)	676, 1072
MluCI	AATT	6 cut(s)	804, 882, 1002, 1111, 1197, 1258
Mly113I	GGCGCC	2 cut(s)	126, 149
MlyI	GAGTC	2 cut(s)	601, 1181
MnlI	CCTC	6 cut(s)	400, 439, 508, 520, 528, 1059
Mph1103I	ATGCAT	1 cut(s)	1248
MroXI	GAANNNNTTC	2 cut(s)	422, 569
MseI	TTAA	3 cut(s)	551, 908, 1001
MslI	CAYNNNNRTG	2 cut(s)	431, 600
MspI	CCGG	2 cut(s)	123, 185
MspR9I	CCNGG	2 cut(s)	186, 914
MvaI	CCWGG	1 cut(s)	914
MwoI	GCNNNNNNNGC	4 cut(s)	115, 240, 597, 1243
NarI	GGCGCC	2 cut(s)	126, 149
NciI	CCSGG	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	5 cut(s)	55, 253, 786, 922, 975
NlaIII	CATG	6 cut(s)	184, 260, 370, 461, 730, 982
NlaIV	GGNNCC	5 cut(s)	127, 150, 305, 480, 1071
NmuCI	GTSAC	1 cut(s)	1078
NsiI	ATGCAT	1 cut(s)	1248
PagI	TCATGA	1 cut(s)	978
PciSI	GCTCTTC	1 cut(s)	1176
PdmI	GAANNNNTTC	2 cut(s)	422, 569
PfeI	GAWTC	3 cut(s)	472, 544, 565
PkrI	GCNGC	8 cut(s)	73, 111, 114, 117, 170, 889, 1047, 1133
PleI	GAGTC	2 cut(s)	601, 1180
PluTI	GGCGCC	2 cut(s)	129, 152
PpsI	GAGTC	2 cut(s)	601, 1180
PshBI	ATTAAT	1 cut(s)	908
Psp6I	CCWGG	1 cut(s)	912
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	912
PspN4I	GGNNCC	5 cut(s)	127, 150, 305, 480, 1071
PspPI	GGNCC	5 cut(s)	303, 370, 463, 478, 558
PstI	CTGCAG	2 cut(s)	1133, 1195
PstNI	CAGNNNCTG	2 cut(s)	251, 547
RseI	CAYNNNNRTG	2 cut(s)	431, 600
SapI	GCTCTTC	1 cut(s)	1176
SaqAI	TTAA	3 cut(s)	551, 908, 1001
SatI	GCNGC	8 cut(s)	72, 110, 113, 116, 169, 888, 1046, 1132
Sau3AI	GATC	5 cut(s)	55, 253, 786, 922, 975
Sau96I	GGNCC	5 cut(s)	303, 370, 463, 478, 558
SchI	GAGTC	2 cut(s)	601, 1181
ScrFI	CCNGG	2 cut(s)	186, 914
SduI	GDGCHC	2 cut(s)	676, 1072
SfaNI	GCATC	1 cut(s)	1255
SfcI	CTRYAG	3 cut(s)	836, 1129, 1191
SfoI	GGCGCC	2 cut(s)	127, 150
SinI	GGWCC	4 cut(s)	303, 370, 478, 558
SmiMI	CAYNNNNRTG	2 cut(s)	431, 600
Sse9I	AATT	6 cut(s)	804, 882, 1002, 1111, 1197, 1258
SsiI	CCGC	4 cut(s)	110, 113, 116, 169
SspDI	GGCGCC	2 cut(s)	125, 148
SspI	AATATT	1 cut(s)	734
SspMI	CTAG	2 cut(s)	65, 279
StyD4I	CCNGG	2 cut(s)	184, 912
StyI	CCWWGG	2 cut(s)	366, 1290
TaaI	ACNGT	5 cut(s)	137, 627, 797, 857, 1101
TaiI	ACGT	2 cut(s)	35, 880
TaqI	TCGA	1 cut(s)	789
TasI	AATT	6 cut(s)	804, 882, 1002, 1111, 1197, 1258
TauI	GCSGC	4 cut(s)	112, 115, 118, 171
TfiI	GAWTC	3 cut(s)	472, 544, 565
Tru1I	TTAA	3 cut(s)	551, 908, 1001
Tru9I	TTAA	3 cut(s)	551, 908, 1001
TscAI	CASTG	2 cut(s)	433, 848
TseFI	GTSAC	1 cut(s)	1078
TseI	GCWGC	4 cut(s)	71, 887, 1045, 1131
Tsp45I	GTSAC	1 cut(s)	1078
TspDTI	ATGAA	6 cut(s)	189, 584, 719, 771, 959, 1014
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	2 cut(s)	433, 848
VpaK11BI	GGWCC	4 cut(s)	303, 370, 478, 558
VspI	ATTAAT	1 cut(s)	908
XagI	CCTNNNNNAGG	1 cut(s)	917
XmiI	GTMKAC	1 cut(s)	453
XmnI	GAANNNNTTC	2 cut(s)	422, 569
XspI	CTAG	2 cut(s)	65, 279
ZraI	GACGTC	2 cut(s)	33, 878
Zsp2I	ATGCAT	1 cut(s)	1248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.