Prupe.1G426900_v2.0.a1

Pumilio homolog 12-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
36704634 .. 36708376
3743 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G426900.3

Sequence Viewer

Length: 1437 bp
ATGGAGGGGTTTCGGTGTTTTCTGGACACGGCGTCGCTTCGTATTCCACAATCTCCGTTGCCAGAATGTGTGTCCGGAAGTTCATCGCAGAACCCCATTGGAGAATCCCATTTTGATCAAACCCTAGAAGCTGCTTTTTCTCGCCTCAAAATCTCATCTTTTTGCCGCCAGCCGCAGCTTTCTCGCTTTGACGGCGATTGCAGTAATGGGTCTGTGATAAAATACCCAACAAACGATCATGGGTTGGGTGGGGAAAATTTTATCCCATTTTGCAACGACGAGCTGCAGAGTCTGAACTTAAATAGTGGCGGTAATGGGGTTCTTTCGCATTTGGGTCTTCAAAATTGCTGGGTTCAGTCTGATATTGATTGCTCGAATGGCTTTGTGTCCAATTTAAATCAACATTCTGATAATAGCCCACATTGGTTGCAAGCGTCTCTGAATGGCTGGTCTCTGGCTGATTTGCGTGGGAGGGTAGCCTTTCTGGCCACGGACCAAGACGGTTGTCGTTGCTTACAAAGAGCAATGGAGGCTGTACCAAACAAAGAATTGATTGATTTGATATTCTTGGAGGTTCTAGAACATGTGGCCACTTTGATGCTTGACCCTCATGGGAATTACGTTGTTCAGAAGCTTGTGGAGGTCTGCAGTGAAGAGCAGAGGACCCAAATGCTTTTAATGTTGACCAAGAAAAATGATTTGCAGCTTATTTGTATTTCCCTTGACACGCGCGGGACTCGATCTGTACAGAAATTGTTGAAGTATGTTACCACCAAAGAGCAAATCACTCTGATTATGAGAGCTCTGAGTCCTGGTGTTGTTGCCTTGAGTAAGAACAGCAATGGTCAACATGTGATCGAGCATTGCTTAGAGCATTTCTCTGTCCAAGACAATGAGCATCTTCTGCATGTGGTGGCAAATAACTGTTGTGGAATCGCAAAAGATAAAAGCGGCTGTTGTGTGCTACAGAAGTGTGTTGAACACTCTAATGGAAAAAACAGAGAGCGTCTGGTTGCTGCGATAACAGCAAAAGCAATAGTTCTAGCAGTAGATCGTTATGGAAACTACGTGCTGCAACATTTACTGGGGTTGAGGATGCCACAAATAACAGAAAATCTTCTGAGACAACTTCGAGGCAGTTATATGTCTCTCTCTTGCAATAAGTATGGCAGCAATGTTGTGGAGAAGTGCTTGTTAGATTCAGGGGAAGAACAGTCTTCACAAATTATTTTTGAGTTGCTTACAAATCGGAACATTTCAATGCTTCTTTTGCATCCTTTTGGAAACTATGTCATCCAGACAGCACTGTCGGTTTCAAAGGGTGTCTACCACGATGCTCTATTAAATCTGGTTCAATTAAACTCCCACGTGATGCGCGGCAATTATTATGGACAAAAGGTACTTGCTTGGCGCGATAGGAGCTTGCAACATATGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

479

Amino Acids

53.29

Weight (kDa)

6.52

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1306
AccI GTMKAC 1 cut(s) 1326
AccII CGCG 4 cut(s) 730, 732, 1377, 1413
AccIII TCCGGA 1 cut(s) 74
AciI CCGC 6 cut(s) 166, 173, 309, 732, 951, 1377
AcoI YGGCCR 2 cut(s) 486, 588
AcsI RAATTY 1 cut(s) 256
AcvI CACGTG 1 cut(s) 1369
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 3 cut(s) 537, 747, 1401
AflIII ACRYGT 2 cut(s) 583, 850
AgsI TTSAA 6 cut(s) 341, 760, 980, 1260, 1317, 1355
AhdI GACNNNNNGTC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 811
AluBI AGCT 7 cut(s) 131, 178, 283, 634, 706, 803, 1422
AluI AGCT 7 cut(s) 131, 178, 283, 634, 706, 803, 1422
Alw21I GWGCWC 1 cut(s) 805
Alw26I GTCTC 4 cut(s) 441, 456, 1117, 1152
AlwNI CAGNNNCTG 1 cut(s) 292
Aor13HI TCCGGA 1 cut(s) 74
AoxI GGCC 2 cut(s) 486, 588
ApeKI GCWGC 7 cut(s) 131, 175, 283, 703, 1016, 1072, 1170
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 1116
AspLEI GCGC 3 cut(s) 732, 1377, 1413
AspS9I GGNCC 2 cut(s) 493, 663
AvaII GGWCC 2 cut(s) 493, 663
BalI TGGCCA 2 cut(s) 488, 590
BanII GRGCYC 1 cut(s) 805
BbrPI CACGTG 1 cut(s) 1369
BbsI GAAGAC 2 cut(s) 329, 1209
Bbv12I GWGCWC 1 cut(s) 805
BbvI GCAGC 7 cut(s) 118, 187, 270, 715, 1003, 1059, 1182
BceAI ACGGC 2 cut(s) 45, 208
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 1 cut(s) 813
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 4 cut(s) 441, 456, 1117, 1152
BfaI CTAG 3 cut(s) 125, 578, 1043
BfmI CTRYAG 3 cut(s) 284, 646, 965
BglI GCCNNNNNGGC 1 cut(s) 485
Bme1390I CCNGG 1 cut(s) 813
Bme18I GGWCC 2 cut(s) 493, 663
BmeRI GACNNNNNGTC 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 493, 663
BmiI GGNNCC 1 cut(s) 665
BmrFI CCNGG 1 cut(s) 813
BmrI ACTGGG 1 cut(s) 1094
BmsI GCATC 6 cut(s) 588, 907, 1086, 1282, 1324, 1362
BmuI ACTGGG 1 cut(s) 1094
BoxI GACNNNNGTC 1 cut(s) 504
BpiI GAAGAC 2 cut(s) 329, 1209
BplI GAGNNNNNCTC 2 cut(s) 863, 895
BpuEI CTTGAG 1 cut(s) 847
BsaAI YACGTR 2 cut(s) 1069, 1369
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 1089
Bse3DI GCAATG 4 cut(s) 531, 847, 862, 1180
BseAI TCCGGA 1 cut(s) 74
BseBI CCWGG 1 cut(s) 813
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 3 cut(s) 1101, 1273, 1293
BseMI GCAATG 4 cut(s) 531, 847, 862, 1180
BseMII CTCAG 2 cut(s) 797, 1112
BseNI ACTGG 1 cut(s) 1089
BseXI GCAGC 7 cut(s) 118, 187, 270, 715, 1003, 1059, 1182
BseYI CCCAGC 1 cut(s) 348
Bsh1236I CGCG 4 cut(s) 730, 732, 1377, 1413
BshFI GGCC 2 cut(s) 488, 590
BsiHKAI GWGCWC 1 cut(s) 805
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 748
BsmAI GTCTC 4 cut(s) 441, 456, 1117, 1152
BsmBI CGTCTC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 748
BsnI GGCC 2 cut(s) 488, 590
Bso31I GGTCTC 1 cut(s) 456
Bsp1286I GDGCHC 1 cut(s) 805
Bsp13I TCCGGA 1 cut(s) 74
Bsp1407I TGTACA 1 cut(s) 745
Bsp143I GATC 5 cut(s) 115, 235, 740, 855, 1051
BspACI CCGC 6 cut(s) 166, 173, 309, 732, 951, 1377
BspANI GGCC 2 cut(s) 488, 590
BspCNI CTCAG 2 cut(s) 798, 1113
BspEI TCCGGA 1 cut(s) 74
BspFNI CGCG 4 cut(s) 730, 732, 1377, 1413
BspLI GGNNCC 1 cut(s) 665
BspMAI CTGCAG 2 cut(s) 288, 650
BspQI GCTCTTC 1 cut(s) 648
BspTNI GGTCTC 1 cut(s) 456
BsrDI GCAATG 4 cut(s) 531, 847, 862, 1180
BsrGI TGTACA 1 cut(s) 745
BsrI ACTGG 1 cut(s) 1089
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 5 cut(s) 115, 235, 740, 855, 1051
BssNI GRCGYC 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 813
Bst4CI ACNGT 4 cut(s) 503, 926, 1215, 1308
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 904
BstAUI TGTACA 1 cut(s) 745
BstBAI YACGTR 2 cut(s) 1069, 1369
BstC8I GCNNGC 3 cut(s) 170, 432, 1424
BstDEI CTNAG 3 cut(s) 806, 868, 1121
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 3 cut(s) 1101, 1273, 1293
BstFNI CGCG 4 cut(s) 730, 732, 1377, 1413
BstHHI GCGC 3 cut(s) 732, 1377, 1413
BstKTI GATC 5 cut(s) 118, 238, 743, 858, 1054
BstMAI GTCTC 4 cut(s) 441, 456, 1117, 1152
BstMBI GATC 5 cut(s) 115, 235, 740, 855, 1051
BstMWI GCNNNNNNNGC 8 cut(s) 192, 378, 485, 530, 904, 1025, 1270, 1419
BstNI CCWGG 1 cut(s) 813
BstNSI RCATGY 3 cut(s) 587, 854, 911
BstPAI GACNNNNGTC 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 811
BstSFI CTRYAG 3 cut(s) 284, 646, 965
BstUI CGCG 4 cut(s) 730, 732, 1377, 1413
BstV1I GCAGC 7 cut(s) 118, 187, 270, 715, 1003, 1059, 1182
BstV2I GAAGAC 2 cut(s) 329, 1209
BsuRI GGCC 2 cut(s) 488, 590
BtgI CCRYGG 1 cut(s) 489
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 3 cut(s) 1101, 1273, 1293
BtsI GCAGTG 1 cut(s) 655
BtsIMutI CAGTG 2 cut(s) 655, 1304
Cac8I GCNNGC 3 cut(s) 170, 432, 1424
CaiI CAGNNNCTG 1 cut(s) 292
CfoI GCGC 3 cut(s) 732, 1377, 1413
Cfr13I GGNCC 2 cut(s) 493, 663
CseI GACGC 3 cut(s) 21, 423, 995
Csp6I GTAC 3 cut(s) 536, 746, 1400
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviAII CATG 5 cut(s) 239, 584, 611, 851, 908
CviQI GTAC 3 cut(s) 536, 746, 1400
DdeI CTNAG 3 cut(s) 806, 868, 1121
DpnI GATC 5 cut(s) 117, 237, 742, 857, 1053
DpnII GATC 5 cut(s) 115, 235, 740, 855, 1051
DraI TTTAAA 1 cut(s) 396
DrdI GACNNNNNNGTC 1 cut(s) 1306
DriI GACNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 1306
EaeI YGGCCR 2 cut(s) 486, 588
Eam1104I CTCTTC 1 cut(s) 648
Eam1105I GACNNNNNGTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 648
Ecl136II GAGCTC 1 cut(s) 803
Eco24I GRGCYC 1 cut(s) 805
Eco31I GGTCTC 1 cut(s) 456
Eco47I GGWCC 2 cut(s) 493, 663
Eco53kI GAGCTC 1 cut(s) 803
Eco72I CACGTG 1 cut(s) 1369
EcoICRI GAGCTC 1 cut(s) 803
EcoO109I RGGNCCY 1 cut(s) 663
EcoRII CCWGG 1 cut(s) 811
EcoT38I GRGCYC 1 cut(s) 805
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 5 cut(s) 242, 587, 614, 854, 911
FaqI GGGAC 1 cut(s) 748
FatI CATG 5 cut(s) 238, 583, 610, 850, 907
FauI CCCGC 1 cut(s) 725
FauNDI CATATG 1 cut(s) 1431
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 1 cut(s) 1326
FokI GGATG 3 cut(s) 1108, 1260, 1280
FriOI GRGCYC 1 cut(s) 805
FspBI CTAG 3 cut(s) 125, 578, 1043
GlaI GCGC 3 cut(s) 731, 1376, 1412
GsaI CCCAGC 1 cut(s) 352
HaeIII GGCC 2 cut(s) 488, 590
HapII CCGG 1 cut(s) 75
HgaI GACGC 3 cut(s) 21, 423, 995
HhaI GCGC 3 cut(s) 732, 1377, 1413
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 5 cut(s) 242, 587, 614, 854, 911
Hin6I GCGC 3 cut(s) 730, 1375, 1411
HinP1I GCGC 3 cut(s) 730, 1375, 1411
HincII GTYRAC 2 cut(s) 684, 848
HindII GTYRAC 2 cut(s) 684, 848
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 6 cut(s) 104, 289, 736, 808, 933, 1199
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 3 cut(s) 684, 848, 1327
Hpy188I TCNGA 9 cut(s) 294, 361, 409, 441, 630, 792, 807, 1122, 1251
Hpy188III TCNNGA 4 cut(s) 23, 75, 578, 1297
Hpy8I GTNNAC 3 cut(s) 684, 848, 1327
Hpy99I CGWCG 2 cut(s) 37, 281
HpyCH4III ACNGT 4 cut(s) 503, 926, 1215, 1308
HpyCH4IV ACGT 3 cut(s) 621, 1068, 1368
HpyF10VI GCNNNNNNNGC 8 cut(s) 192, 378, 485, 530, 904, 1025, 1270, 1419
HpyF3I CTNAG 3 cut(s) 806, 868, 1121
HpySE526I ACGT 3 cut(s) 621, 1068, 1368
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 5 cut(s) 242, 587, 614, 854, 911
HspAI GCGC 3 cut(s) 730, 1375, 1411
Kpn2I TCCGGA 1 cut(s) 74
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 5 cut(s) 115, 235, 740, 855, 1051
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 1 cut(s) 1419
Lsp1109I GCAGC 7 cut(s) 118, 187, 270, 715, 1003, 1059, 1182
LweI GCATC 6 cut(s) 588, 907, 1086, 1282, 1324, 1362
MaeI CTAG 3 cut(s) 125, 578, 1043
MaeII ACGT 3 cut(s) 621, 1068, 1368
MaeIII GTNAC 1 cut(s) 766
MalI GATC 5 cut(s) 117, 237, 742, 857, 1053
MboI GATC 5 cut(s) 115, 235, 740, 855, 1051
MboII GAAGA 6 cut(s) 329, 665, 893, 1109, 1209, 1220
MhlI GDGCHC 1 cut(s) 805
MlsI TGGCCA 2 cut(s) 488, 590
MluCI AATT 9 cut(s) 256, 343, 391, 548, 616, 752, 1224, 1355, 1381
MluNI TGGCCA 2 cut(s) 488, 590
MlyI GAGTC 3 cut(s) 298, 730, 817
MnlI CCTC 9 cut(s) 155, 465, 523, 565, 618, 634, 654, 1086, 1127
Mox20I TGGCCA 2 cut(s) 488, 590
MroI TCCGGA 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 1116
MscI TGGCCA 2 cut(s) 488, 590
MseI TTAA 5 cut(s) 299, 395, 677, 1343, 1358
MslI CAYNNNNRTG 3 cut(s) 596, 987, 1259
Msp20I TGGCCA 2 cut(s) 488, 590
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 813
MvaI CCWGG 1 cut(s) 813
MvnI CGCG 4 cut(s) 730, 732, 1377, 1413
MwoI GCNNNNNNNGC 8 cut(s) 192, 378, 485, 530, 904, 1025, 1270, 1419
NdeI CATATG 1 cut(s) 1431
NdeII GATC 5 cut(s) 115, 235, 740, 855, 1051
NlaIII CATG 5 cut(s) 242, 587, 614, 854, 911
NlaIV GGNNCC 1 cut(s) 665
NspI RCATGY 3 cut(s) 587, 854, 911
PciI ACATGT 2 cut(s) 583, 850
PciSI GCTCTTC 1 cut(s) 648
PdmI GAANNNNTTC 1 cut(s) 1116
PfeI GAWTC 3 cut(s) 104, 933, 1199
PleI GAGTC 3 cut(s) 297, 730, 816
PmaCI CACGTG 1 cut(s) 1369
PmlI CACGTG 1 cut(s) 1369
PpsI GAGTC 3 cut(s) 297, 730, 816
Ppu21I YACGTR 2 cut(s) 1069, 1369
PpuMI RGGWCCY 1 cut(s) 663
PscI ACATGT 2 cut(s) 583, 850
PshAI GACNNNNGTC 1 cut(s) 504
Psp124BI GAGCTC 1 cut(s) 805
Psp5II RGGWCCY 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 811
PspCI CACGTG 1 cut(s) 1369
PspFI CCCAGC 1 cut(s) 348
PspGI CCWGG 1 cut(s) 811
PspN4I GGNNCC 1 cut(s) 665
PspPI GGNCC 2 cut(s) 493, 663
PspPPI RGGWCCY 1 cut(s) 663
PstI CTGCAG 2 cut(s) 288, 650
PstNI CAGNNNCTG 1 cut(s) 292
RsaI GTAC 3 cut(s) 537, 747, 1401
RsaNI GTAC 3 cut(s) 536, 746, 1400
RseI CAYNNNNRTG 3 cut(s) 596, 987, 1259
SacI GAGCTC 1 cut(s) 805
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 5 cut(s) 299, 395, 677, 1343, 1358
Sau3AI GATC 5 cut(s) 115, 235, 740, 855, 1051
Sau96I GGNCC 2 cut(s) 493, 663
SchI GAGTC 3 cut(s) 298, 730, 817
ScrFI CCNGG 1 cut(s) 813
SduI GDGCHC 1 cut(s) 805
SfaNI GCATC 6 cut(s) 588, 907, 1086, 1282, 1324, 1362
SfcI CTRYAG 3 cut(s) 284, 646, 965
SinI GGWCC 2 cut(s) 493, 663
SmiI ATTTAAAT 1 cut(s) 396
SmiMI CAYNNNNRTG 3 cut(s) 596, 987, 1259
SmlI CTYRAG 1 cut(s) 826
SmoI CTYRAG 1 cut(s) 826
Sse9I AATT 9 cut(s) 256, 343, 391, 548, 616, 752, 1224, 1355, 1381
SsiI CCGC 6 cut(s) 166, 173, 309, 732, 951, 1377
SspMI CTAG 3 cut(s) 125, 578, 1043
SstI GAGCTC 1 cut(s) 805
StyD4I CCNGG 1 cut(s) 811
SwaI ATTTAAAT 1 cut(s) 396
TaaI ACNGT 4 cut(s) 503, 926, 1215, 1308
TaiI ACGT 3 cut(s) 624, 1071, 1371
TaqI TCGA 4 cut(s) 374, 739, 858, 1132
TasI AATT 9 cut(s) 256, 343, 391, 548, 616, 752, 1224, 1355, 1381
TatI WGTACW 1 cut(s) 745
TauI GCSGC 4 cut(s) 168, 175, 954, 1380
TfiI GAWTC 3 cut(s) 104, 933, 1199
Tru1I TTAA 5 cut(s) 299, 395, 677, 1343, 1358
Tru9I TTAA 5 cut(s) 299, 395, 677, 1343, 1358
TscAI CASTG 2 cut(s) 655, 1311
TseI GCWGC 7 cut(s) 131, 175, 283, 703, 1016, 1072, 1170
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 2 cut(s) 45, 506
TspRI CASTG 2 cut(s) 655, 1311
VpaK11BI GGWCC 2 cut(s) 493, 663
XapI RAATTY 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 577
XceI RCATGY 3 cut(s) 587, 854, 911
XmiI GTMKAC 1 cut(s) 1326
XmnI GAANNNNTTC 1 cut(s) 1116
XspI CTAG 3 cut(s) 125, 578, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.