FvH4_2g35650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010369
Physical Location & Seq
Forward (+)
26290778 .. 26291551
774 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35650.t1

Sequence Viewer

Length: 774 bp
ATGGAACACTATCTCCAACTGATAGGAACGGAAAACCCAGCCATGAATCTGAGACCCAATAATCCATTTCTATTTTCAGTTCGCTCTCAGCTCAGACCCTTTTGTAGTTCAAGAATCAGTGTTGTGAGGAGGGTAAGGGATAAGGCCACTGACGCTGAGCTCAAAGACAACTGGCTGGCATCTCTCTCTTGCCCCTCTCCTCAAATCATTGATGGTGAAAGGGACTCAGATTCCAGTTGGGTATTTGGGATCGACCCAGACGTTTCTGGTGCCTTGGCGCTTCTGAAAGGCAACAATAATCACTCTGCTTCTTCCGCGCAGGTATATGACTCCCCACACTTGAAAGTACTTGTTGGTAAAAGTGTTCGAAGACGATTAGATGCAAAATCTATAGTGGAGTTGCTTAACAGTTTAGATGCTCCTCTTGGTTCAATTGCATACTTAGAGCAATCAACTCCGTATCCACAAGATGGAAAGCAGGGTTGGTGGAGTGGAGGTTTTGGGTATGGACTTTGGATTGGAATCTTGGTCGGGTTGGGGTTCTCTGTTGTTCCGGTGCCATCTCAACTGTGGAAGAAGAGTTTTGAACTCACTGGAAGCATGTCAACAAAGGATGATAGCCGCAGGGTTGCTTCTGCTTTGTTTCCATCTTTGAGTTGTGAGTTGACAAGAAAGAAGGACCATGGGAGGGCTGAAGCTCTACTCATTGCTGCGTATGGAAAAGGGATGAACTTGAAGTCTGAGTCATGCAACGCAGAGGTACTGATACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

28.14

Weight (kDa)

8.63

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 310
AccB1I GGYRCC 2 cut(s) 269, 556
AccB7I CCANNNNNTGG 1 cut(s) 470
AccII CGCG 1 cut(s) 317
AciI CCGC 2 cut(s) 315, 622
AclWI GGATC 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 714
AfaI GTAC 2 cut(s) 348, 762
AfiI CCNNNNNNNGG 2 cut(s) 470, 688
AgsI TTSAA 5 cut(s) 111, 343, 432, 587, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 466, 498
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 3 cut(s) 91, 160, 698
AluI AGCT 3 cut(s) 91, 160, 698
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 257
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 710
AspLEI GCGC 2 cut(s) 280, 319
AspS9I GGNCC 1 cut(s) 679
AsuHPI GGTGA 1 cut(s) 227
AsuII TTCGAA 1 cut(s) 367
AvaII GGWCC 1 cut(s) 679
BanI GGYRCC 2 cut(s) 269, 556
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 697
BccI CCATC 4 cut(s) 206, 464, 568, 655
BciVI GTATCC 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 281
BfuAI ACCTGC 1 cut(s) 310
BfuI GTATCC 1 cut(s) 471
BisI GCNGC 2 cut(s) 622, 711
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 2 cut(s) 623, 712
BmcAI AGTACT 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 679
BmgT120I GGNCC 1 cut(s) 679
BmiI GGNNCC 2 cut(s) 271, 558
BmsI GCATC 3 cut(s) 188, 370, 406
BpiI GAAGAC 1 cut(s) 376
Bpu1102I GCTNAGC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 273, 682
BsaWI WCCGGW 1 cut(s) 553
BsaXI ACNNNNNCTCC 3 cut(s) 27, 481, 511
Bsc4I CCNNNNNNNGG 2 cut(s) 470, 688
Bse1I ACTGG 3 cut(s) 176, 234, 598
Bse3DI GCAATG 1 cut(s) 705
Bse8I GATNNNNATC 1 cut(s) 521
BseDI CCNNGG 2 cut(s) 273, 682
BseGI GGATG 2 cut(s) 619, 732
BseJI GATNNNNATC 1 cut(s) 521
BseLI CCNNNNNNNGG 2 cut(s) 470, 688
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 6 cut(s) 41, 101, 106, 147, 240, 732
BseNI ACTGG 3 cut(s) 176, 234, 598
BseRI GAGGAG 3 cut(s) 142, 189, 411
BseXI GCAGC 1 cut(s) 697
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 2 cut(s) 269, 556
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 554
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 470, 688
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 156
Bsp19I CCATGG 1 cut(s) 682
BspACI CCGC 2 cut(s) 315, 622
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 6 cut(s) 42, 100, 105, 148, 239, 733
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 271, 558
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 1 cut(s) 257
BspT104I TTCGAA 1 cut(s) 367
BspT107I GGYRCC 2 cut(s) 269, 556
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 705
BsrI ACTGG 3 cut(s) 176, 234, 598
BssECI CCNNGG 2 cut(s) 273, 682
BssMI GATC 1 cut(s) 249
BssT1I CCWWGG 2 cut(s) 273, 682
Bst4CI ACNGT 2 cut(s) 410, 570
Bst6I CTCTTC 1 cut(s) 572
BstBI TTCGAA 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 7 cut(s) 50, 87, 92, 156, 226, 442, 741
BstDSI CCRYGG 1 cut(s) 682
BstF5I GGATG 2 cut(s) 619, 732
BstFNI CGCG 1 cut(s) 317
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 2 cut(s) 280, 319
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 152, 314
BstNSI RCATGY 1 cut(s) 604
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 697
BstV2I GAAGAC 1 cut(s) 376
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 682
BtsCI GGATG 2 cut(s) 619, 732
BtsIMutI CAGTG 3 cut(s) 124, 147, 591
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 2 cut(s) 280, 319
Cfr13I GGNCC 1 cut(s) 679
CseI GACGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 347, 761
CviAII CATG 4 cut(s) 43, 601, 683, 747
CviJI RGCY 8 cut(s) 41, 91, 146, 160, 175, 621, 692, 698
CviKI_1 RGCY 8 cut(s) 41, 91, 146, 160, 175, 621, 692, 698
CviQI GTAC 2 cut(s) 347, 761
DdeI CTNAG 7 cut(s) 50, 87, 92, 156, 226, 442, 741
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 2 cut(s) 273, 682
Eco24I GRGCYC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 679
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 714
EcoICRI GAGCTC 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 273, 682
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 2 cut(s) 273, 682
FaeI CATG 4 cut(s) 46, 604, 686, 750
FaqI GGGAC 1 cut(s) 236
FatI CATG 4 cut(s) 42, 600, 682, 746
Fnu4HI GCNGC 2 cut(s) 622, 711
FokI GGATG 2 cut(s) 626, 739
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 622, 711
GlaI GCGC 2 cut(s) 279, 318
GluI GCNGC 2 cut(s) 622, 711
GsaI CCCAGC 1 cut(s) 41
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 554
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 280, 319
Hin1II CATG 4 cut(s) 46, 604, 686, 750
Hin6I GCGC 2 cut(s) 278, 317
HinP1I GCGC 2 cut(s) 278, 317
HincII GTYRAC 2 cut(s) 606, 666
HindII GTYRAC 2 cut(s) 606, 666
HinfI GANTC 7 cut(s) 46, 114, 224, 230, 329, 522, 743
HpaII CCGG 1 cut(s) 554
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 606, 666
Hpy188I TCNGA 5 cut(s) 51, 95, 229, 285, 742
Hpy188III TCNNGA 1 cut(s) 111
Hpy8I GTNNAC 2 cut(s) 606, 666
HpyAV CCTTC 1 cut(s) 670
HpyCH4III ACNGT 2 cut(s) 410, 570
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 3 cut(s) 383, 437, 750
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 314
HpyF3I CTNAG 7 cut(s) 50, 87, 92, 156, 226, 442, 741
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 4 cut(s) 46, 604, 686, 750
HspAI GCGC 2 cut(s) 278, 317
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 424
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 3 cut(s) 188, 370, 406
MaeII ACGT 1 cut(s) 261
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 4 cut(s) 303, 381, 586, 589
MfeI CAATTG 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 1 cut(s) 432
MlyI GAGTC 3 cut(s) 218, 323, 752
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 8 cut(s) 120, 123, 205, 210, 432, 488, 681, 751
MseI TTAA 2 cut(s) 405, 772
MspI CCGG 1 cut(s) 554
MunI CAATTG 1 cut(s) 432
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 152, 314
NcoI CCATGG 1 cut(s) 682
NdeII GATC 1 cut(s) 249
NlaIII CATG 4 cut(s) 46, 604, 686, 750
NlaIV GGNNCC 2 cut(s) 271, 558
NspI RCATGY 1 cut(s) 604
NspV TTCGAA 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 4 cut(s) 46, 114, 230, 522
PflMI CCANNNNNTGG 1 cut(s) 470
PkrI GCNGC 2 cut(s) 623, 712
PleI GAGTC 3 cut(s) 218, 323, 751
PpsI GAGTC 3 cut(s) 218, 323, 751
Psp124BI GAGCTC 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 271, 558
PspPI GGNCC 1 cut(s) 679
RsaI GTAC 2 cut(s) 348, 762
RsaNI GTAC 2 cut(s) 347, 761
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 405, 772
SatI GCNGC 2 cut(s) 622, 711
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 679
ScaI AGTACT 1 cut(s) 348
SchI GAGTC 3 cut(s) 218, 323, 752
SduI GDGCHC 1 cut(s) 162
SetI ASST 8 cut(s) 93, 162, 264, 324, 499, 700, 762, 772
SfaNI GCATC 3 cut(s) 188, 370, 406
SfcI CTRYAG 1 cut(s) 390
SfuI TTCGAA 1 cut(s) 367
SinI GGWCC 1 cut(s) 679
Sse9I AATT 1 cut(s) 432
SsiI CCGC 2 cut(s) 315, 622
SstI GAGCTC 1 cut(s) 162
StyI CCWWGG 2 cut(s) 273, 682
TaaI ACNGT 2 cut(s) 410, 570
TaiI ACGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 252, 367
TasI AATT 1 cut(s) 432
TatI WGTACW 1 cut(s) 346
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 4 cut(s) 46, 114, 230, 522
Tru1I TTAA 2 cut(s) 405, 772
Tru9I TTAA 2 cut(s) 405, 772
TscAI CASTG 3 cut(s) 124, 154, 598
TseI GCWGC 1 cut(s) 710
TspDTI ATGAA 2 cut(s) 59, 743
TspGWI ACGGA 2 cut(s) 44, 447
TspRI CASTG 3 cut(s) 124, 154, 598
Van91I CCANNNNNTGG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 679
XceI RCATGY 1 cut(s) 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 567
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.