Rh5AG331300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0010369
Physical Location & Seq
Reverse (-)
52757043 .. 52764234
7192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG331300.1

Sequence Viewer

Length: 636 bp
ATGGAACACCATCTCCAACTGATAAGAACACATAACCAACTCATGAATCTGAGACCCAATAACCCATTGTTAAATTCAGTTTGCTCTCAGCTCAGACCCTTGTGTACCGTTGAATTATGTCCAACAAAGCCGATTAAGAGTTCAAGAATCAGTGTCGGGAGGGTTAGGGATAAGGTCTCTGACGCTCAGCTCAAAGACAACTGGTTGGCATCTCTCTCTTGCCCCTTTCCTCACATGAGTGACGGTGAACAAGATTCAATCCCAACCAATAATTCGGATTCCAGTTGGGTCTTTGGGATCGACCCAGATGTTTCTGGTGCCTTGGCGCTTTTGAAGGGCAATCACTCTGCTTCTTCTGCCCAGGTATATGACTCCCCACACTTGAAAGTACTTGTTGGTAAAAGTGTTCGCAGACGTTTAGATGCAAAATCTATCGTTCAGTTGCTTAGCAGTTTCGATGCTCCCCTTGGTTCAACGGCATACTTAGAGCAATCAACGCCGTATCCACAAGATGGAAAGCAGGTTAGTGTGAGATATAGTGCTAGATTCCTTTGGACTTTCTATTTTGTCTTCAATTGTAACAACTTCCTTTATATAATTTTTTGTTATTCTCCTGTTTGTTGCATGTTGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.65

Weight (kDa)

8.63

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 511
AccB1I GGYRCC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 512
AclWI GGATC 1 cut(s) 305
AcsI RAATTY 1 cut(s) 73
AfaI GTAC 2 cut(s) 106, 390
AfiI CCNNNNNNNGG 1 cut(s) 512
AgsI TTSAA 7 cut(s) 113, 144, 258, 334, 385, 474, 574
AjnI CCWGG 1 cut(s) 360
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
AleI CACNNNNGTG 1 cut(s) 237
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 2 cut(s) 91, 190
AluI AGCT 2 cut(s) 91, 190
Alw26I GTCTC 2 cut(s) 46, 181
AlwI GGATC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 73
AspLEI GCGC 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 562
BccI CCATC 2 cut(s) 18, 506
BceAI ACGGC 2 cut(s) 484, 492
BciT130I CCWGG 1 cut(s) 362
BciVI GTATCC 1 cut(s) 513
BcoDI GTCTC 2 cut(s) 46, 181
BfaI CTAG 1 cut(s) 543
BfoI RGCGCY 1 cut(s) 329
BfuAI ACCTGC 1 cut(s) 511
BfuI GTATCC 1 cut(s) 513
BlpI GCTNAGC 2 cut(s) 186, 446
BmcAI AGTACT 1 cut(s) 390
Bme1390I CCNGG 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 3 cut(s) 218, 412, 448
BpiI GAAGAC 1 cut(s) 562
Bpu1102I GCTNAGC 2 cut(s) 186, 446
BsaI GGTCTC 2 cut(s) 46, 181
BsaJI CCNNGG 3 cut(s) 321, 360, 466
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse1I ACTGG 2 cut(s) 206, 282
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 3 cut(s) 321, 360, 466
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMII CTCAG 4 cut(s) 41, 101, 106, 200
BseNI ACTGG 2 cut(s) 206, 282
BshNI GGYRCC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 512
BsmAI GTCTC 2 cut(s) 46, 181
Bso31I GGTCTC 2 cut(s) 46, 181
Bsp143I GATC 1 cut(s) 297
Bsp1720I GCTNAGC 2 cut(s) 186, 446
BspCNI CTCAG 4 cut(s) 42, 100, 105, 199
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 319
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 317
BspTNI GGTCTC 2 cut(s) 46, 181
BsrI ACTGG 2 cut(s) 206, 282
BssECI CCNNGG 3 cut(s) 321, 360, 466
BssMI GATC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 321, 466
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 109, 245
BstDEI CTNAG 6 cut(s) 50, 87, 92, 186, 446, 484
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 2 cut(s) 46, 181
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 2 cut(s) 356, 496
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 562
BsuI GTATCC 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 157
BveI ACCTGC 1 cut(s) 511
CciI TCATGA 1 cut(s) 42
CfoI GCGC 1 cut(s) 328
CseI GACGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 105, 389
CviAII CATG 3 cut(s) 43, 235, 625
CviJI RGCY 3 cut(s) 91, 130, 190
CviKI_1 RGCY 3 cut(s) 91, 130, 190
CviQI GTAC 2 cut(s) 105, 389
DdeI CTNAG 6 cut(s) 50, 87, 92, 186, 446, 484
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Eco130I CCWWGG 2 cut(s) 321, 466
Eco31I GGTCTC 2 cut(s) 46, 181
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 2 cut(s) 321, 466
ErhI CCWWGG 2 cut(s) 321, 466
FaeI CATG 3 cut(s) 46, 238, 628
FatI CATG 3 cut(s) 42, 234, 624
FspBI CTAG 1 cut(s) 543
GlaI GCGC 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 329
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 328
Hin1II CATG 3 cut(s) 46, 238, 628
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HinfI GANTC 6 cut(s) 46, 147, 254, 278, 371, 546
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 105, 248
Hpy188I TCNGA 4 cut(s) 51, 95, 181, 277
Hpy188III TCNNGA 3 cut(s) 43, 144, 157
Hpy8I GTNNAC 2 cut(s) 105, 248
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 2 cut(s) 109, 245
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 2 cut(s) 425, 624
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 496
HpyF3I CTNAG 6 cut(s) 50, 87, 92, 186, 446, 484
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 3 cut(s) 46, 238, 628
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 8 cut(s) 187, 295, 300, 318, 347, 374, 506, 627
LweI GCATC 3 cut(s) 218, 412, 448
MaeI CTAG 1 cut(s) 543
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 2 cut(s) 239, 578
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 2 cut(s) 345, 562
MfeI CAATTG 1 cut(s) 574
MluCI AATT 5 cut(s) 73, 113, 271, 574, 597
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 2 cut(s) 40, 146
MnlI CCTC 2 cut(s) 153, 240
MseI TTAA 2 cut(s) 71, 135
MslI CAYNNNNRTG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 362
MunI CAATTG 1 cut(s) 574
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 2 cut(s) 356, 496
NdeII GATC 1 cut(s) 297
NlaIII CATG 3 cut(s) 46, 238, 628
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 628
OliI CACNNNNGTG 1 cut(s) 237
PagI TCATGA 1 cut(s) 42
PfeI GAWTC 5 cut(s) 46, 147, 254, 278, 546
PflMI CCANNNNNTGG 1 cut(s) 512
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 319
RsaI GTAC 2 cut(s) 106, 390
RsaNI GTAC 2 cut(s) 105, 389
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 2 cut(s) 71, 135
Sau3AI GATC 1 cut(s) 297
ScaI AGTACT 1 cut(s) 390
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 362
SetI ASST 6 cut(s) 93, 177, 192, 366, 418, 525
SfaNI GCATC 3 cut(s) 218, 412, 448
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 5 cut(s) 73, 113, 271, 574, 597
SspMI CTAG 1 cut(s) 543
StyD4I CCNGG 1 cut(s) 360
StyI CCWWGG 2 cut(s) 321, 466
TaaI ACNGT 2 cut(s) 109, 245
TaiI ACGT 1 cut(s) 418
TaqI TCGA 2 cut(s) 300, 456
TasI AATT 5 cut(s) 73, 113, 271, 574, 597
TatI WGTACW 1 cut(s) 388
TfiI GAWTC 5 cut(s) 46, 147, 254, 278, 546
Tru1I TTAA 2 cut(s) 71, 135
Tru9I TTAA 2 cut(s) 71, 135
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 59
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 512
XapI RAATTY 1 cut(s) 73
XceI RCATGY 1 cut(s) 628
XspI CTAG 1 cut(s) 543
ZrmI AGTACT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.