Rroxscaffold_1G00030760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010369
Physical Location & Seq
Forward (+)
41109165 .. 41115325
6161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030760.1

Sequence Viewer

Length: 951 bp
ATGGAACACCATCTCCAACTGATAAGAACACATAACCAACTCATGAATCTGAGACCCAATAACCCATTGTTAAATTCAGTTTGCTCTCAGCTCAGACCCTTGTGTACTGTTGAATTATGTCCAACAAAGCCGTGTAAGAGTTCAAGAATCAGTGTCGGGAGGGTTAGGGATAAGGTCTCCGACGCTCAGCTCAAAGACAACTGGCTAGCATCTCTCTCTTGCCCCTTTCCTCACATCAGTGACGGTGAACAAGATTCAACCCCAACCAATAACTCGGATTCCAGTTGGGTCTTTGGGATCGACCCAGATGTTTCTGGTGCCTTGGCGCTTTTGAAGGGCAATCACTCTGCTTCTTCTGCTCAGCTGCACTGGCAACAACTTATTGCTATAAAATTTTGCTTGCAATCTCTTATCCTATCTCTTGTTAGGTTAACCATGTATGCATGTCTGTTTCACGTATATGACTCCCCACACTTGAAAGTACTTGTTGGTAAAAGTGTTCGCAGACGTTTAGATGCAAAATCTATCGTTCAGTTGCTTAGCAGTTTCGATGCTCCCCTTGGTTCAACGGCATACTTAGAGCAATCAACGCCGTATCCACAAGATGGAAAGCAGGGTTGGTGGAGCGGAGGTTTTGGATATGGACTATGGATTGGAATCTTAGTCGGCTTGGGTTTTTCTGTTGTTCCAGTGCCATCTCTTCTGTGGAAGAAGAATTTTGAACTCACTGGAAGCATGTCAACAAAGGATGATAGCCGGAGGGTTGCATCTGCATTATTTCCATCTTTGAGTTCAGAGTTGAGAAGAAAAAAGGACCATGTCACAAGAGTGTTTAACATTTTGTGGATGATATTTTTAGCCTGGAGGGCTGAAGCTCTACTCATTGCTGCGTATGGAAAAGGGCTAAAGTTGAAGTCAGAATCATGCAACCCGGAGGTACTGATGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

35.16

Weight (kDa)

9.27

Isoelectric Point (pI)

57.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 605
AccBSI CCGCTC 1 cut(s) 627
AciI CCGC 1 cut(s) 627
AclWI GGATC 1 cut(s) 305
AcsI RAATTY 3 cut(s) 73, 392, 715
AcuI CTGAAG 1 cut(s) 891
AfaI GTAC 3 cut(s) 106, 483, 939
AfiI CCNNNNNNNGG 1 cut(s) 605
AgsI TTSAA 8 cut(s) 113, 144, 258, 334, 478, 567, 722, 913
AjnI CCWGG 1 cut(s) 860
AjuI GAANNNNNNNTTGG 2 cut(s) 601, 633
AleI CACNNNNGTG 2 cut(s) 237, 827
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 4 cut(s) 91, 190, 364, 875
AluI AGCT 4 cut(s) 91, 190, 364, 875
Alw26I GTCTC 2 cut(s) 46, 181
AlwI GGATC 1 cut(s) 305
ApeKI GCWGC 2 cut(s) 364, 887
ApoI RAATTY 3 cut(s) 73, 392, 715
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 814
AsuC2I CCSGG 1 cut(s) 932
AsuHPI GGTGA 1 cut(s) 257
AsuNHI GCTAGC 1 cut(s) 205
AvaII GGWCC 1 cut(s) 814
BanI GGYRCC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 351, 874
BccI CCATC 4 cut(s) 18, 599, 703, 790
BceAI ACGGC 3 cut(s) 115, 577, 585
BciT130I CCWGG 1 cut(s) 862
BciVI GTATCC 1 cut(s) 606
BcnI CCSGG 1 cut(s) 932
BcoDI GTCTC 2 cut(s) 46, 181
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 329
BfuI GTATCC 1 cut(s) 606
BglI GCCNNNNNGGC 1 cut(s) 866
BisI GCNGC 2 cut(s) 365, 888
BlpI GCTNAGC 3 cut(s) 186, 360, 539
BlsI GCNGC 2 cut(s) 366, 889
BmcAI AGTACT 1 cut(s) 483
Bme1390I CCNGG 2 cut(s) 862, 932
Bme18I GGWCC 1 cut(s) 814
BmgT120I GGNCC 1 cut(s) 814
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 2 cut(s) 862, 932
BmsI GCATC 5 cut(s) 218, 505, 541, 776, 933
BmtI GCTAGC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 883
Bpu1102I GCTNAGC 3 cut(s) 186, 360, 539
BpuMI CCSGG 1 cut(s) 932
BsaAI YACGTR 1 cut(s) 457
BsaBI GATNNNNATC 1 cut(s) 656
BsaI GGTCTC 2 cut(s) 46, 181
BsaJI CCNNGG 2 cut(s) 321, 559
BsaXI ACNNNNNCTCC 3 cut(s) 27, 616, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse1I ACTGG 5 cut(s) 206, 282, 374, 689, 733
Bse3DI GCAATG 1 cut(s) 882
Bse8I GATNNNNATC 1 cut(s) 656
BseBI CCWGG 1 cut(s) 862
BseDI CCNNGG 2 cut(s) 321, 559
BseGI GGATG 2 cut(s) 754, 852
BseJI GATNNNNATC 1 cut(s) 656
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 5 cut(s) 41, 101, 106, 200, 374
BseNI ACTGG 5 cut(s) 206, 282, 374, 689, 733
BseXI GCAGC 2 cut(s) 351, 874
BsgI GTGCAG 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 317
BsiSI CCGG 2 cut(s) 757, 932
BslI CCNNNNNNNGG 1 cut(s) 605
BsmAI GTCTC 2 cut(s) 46, 181
Bso31I GGTCTC 2 cut(s) 46, 181
Bsp143I GATC 1 cut(s) 297
Bsp1720I GCTNAGC 3 cut(s) 186, 360, 539
BspACI CCGC 1 cut(s) 627
BspCNI CTCAG 5 cut(s) 42, 100, 105, 199, 373
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 319
BspOI GCTAGC 1 cut(s) 209
BspPI GGATC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 317
BspTNI GGTCTC 2 cut(s) 46, 181
BsrBI CCGCTC 1 cut(s) 627
BsrDI GCAATG 1 cut(s) 882
BsrI ACTGG 5 cut(s) 206, 282, 374, 689, 733
BssECI CCNNGG 2 cut(s) 321, 559
BssMI GATC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 321, 559
Bst2UI CCWGG 1 cut(s) 862
Bst4CI ACNGT 2 cut(s) 109, 245
Bst6I CTCTTC 1 cut(s) 705
BstBAI YACGTR 1 cut(s) 457
BstC8I GCNNGC 2 cut(s) 207, 401
BstDEI CTNAG 9 cut(s) 50, 87, 92, 186, 360, 539, 577, 661, 948
BstF5I GGATG 2 cut(s) 754, 852
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 2 cut(s) 46, 181
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 4 cut(s) 356, 370, 589, 866
BstNI CCWGG 1 cut(s) 862
BstNSI RCATGY 2 cut(s) 447, 739
BstSCI CCNGG 2 cut(s) 860, 930
BstV1I GCAGC 2 cut(s) 351, 874
BsuI GTATCC 1 cut(s) 606
BtsCI GGATG 2 cut(s) 754, 852
BtsIMutI CAGTG 5 cut(s) 157, 244, 367, 696, 726
Cac8I GCNNGC 2 cut(s) 207, 401
CciI TCATGA 1 cut(s) 42
CfoI GCGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 814
CseI GACGC 1 cut(s) 191
Csp6I GTAC 3 cut(s) 105, 482, 938
CviAII CATG 6 cut(s) 43, 436, 444, 736, 818, 924
CviQI GTAC 3 cut(s) 105, 482, 938
DdeI CTNAG 9 cut(s) 50, 87, 92, 186, 360, 539, 577, 661, 948
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
Eco130I CCWWGG 2 cut(s) 321, 559
Eco31I GGTCTC 2 cut(s) 46, 181
Eco47I GGWCC 1 cut(s) 814
Eco57I CTGAAG 1 cut(s) 891
EcoRII CCWGG 1 cut(s) 860
EcoT14I CCWWGG 2 cut(s) 321, 559
EcoT22I ATGCAT 1 cut(s) 445
ErhI CCWWGG 2 cut(s) 321, 559
FaeI CATG 6 cut(s) 46, 439, 447, 739, 821, 927
FatI CATG 6 cut(s) 42, 435, 443, 735, 817, 923
Fnu4HI GCNGC 2 cut(s) 365, 888
FokI GGATG 2 cut(s) 761, 859
Fsp4HI GCNGC 2 cut(s) 365, 888
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 327
GluI GCNGC 2 cut(s) 365, 888
GsuI CTGGAG 1 cut(s) 883
HaeII RGCGCY 1 cut(s) 329
HapII CCGG 2 cut(s) 757, 932
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 328
Hin1II CATG 6 cut(s) 46, 439, 447, 739, 821, 927
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HincII GTYRAC 2 cut(s) 432, 741
HindII GTYRAC 2 cut(s) 432, 741
HinfI GANTC 7 cut(s) 46, 147, 254, 278, 464, 657, 920
HpaI GTTAAC 1 cut(s) 432
HpaII CCGG 2 cut(s) 757, 932
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 4 cut(s) 105, 248, 432, 741
Hpy188I TCNGA 6 cut(s) 51, 95, 181, 277, 796, 919
Hpy188III TCNNGA 3 cut(s) 43, 144, 157
Hpy8I GTNNAC 4 cut(s) 105, 248, 432, 741
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 2 cut(s) 109, 245
HpyCH4IV ACGT 2 cut(s) 456, 508
HpyCH4V TGCA 7 cut(s) 367, 403, 443, 518, 767, 773, 927
HpyF10VI GCNNNNNNNGC 4 cut(s) 356, 370, 589, 866
HpyF3I CTNAG 9 cut(s) 50, 87, 92, 186, 360, 539, 577, 661, 948
HpySE526I ACGT 2 cut(s) 456, 508
Hsp92II CATG 6 cut(s) 46, 439, 447, 739, 821, 927
HspAI GCGC 1 cut(s) 326
KspAI GTTAAC 1 cut(s) 432
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 2 cut(s) 559, 624
Lsp1109I GCAGC 2 cut(s) 351, 874
LweI GCATC 5 cut(s) 218, 505, 541, 776, 933
MaeI CTAG 1 cut(s) 206
MaeII ACGT 2 cut(s) 456, 508
MaeIII GTNAC 2 cut(s) 239, 820
MalI GATC 1 cut(s) 299
MbiI CCGCTC 1 cut(s) 627
MboI GATC 1 cut(s) 297
MboII GAAGA 5 cut(s) 345, 692, 721, 724, 816
MluCI AATT 4 cut(s) 73, 113, 392, 715
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 3 cut(s) 40, 146, 204
MnlI CCTC 6 cut(s) 153, 240, 623, 753, 858, 928
Mph1103I ATGCAT 1 cut(s) 445
MseI TTAA 3 cut(s) 71, 431, 834
MslI CAYNNNNRTG 3 cut(s) 237, 459, 827
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 2 cut(s) 757, 932
MspR9I CCNGG 2 cut(s) 862, 932
MvaI CCWGG 1 cut(s) 862
MwoI GCNNNNNNNGC 4 cut(s) 356, 370, 589, 866
NciI CCSGG 1 cut(s) 932
NdeII GATC 1 cut(s) 297
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 6 cut(s) 46, 439, 447, 739, 821, 927
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 2 cut(s) 239, 820
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 2 cut(s) 447, 739
OliI CACNNNNGTG 2 cut(s) 237, 827
PagI TCATGA 1 cut(s) 42
PfeI GAWTC 6 cut(s) 46, 147, 254, 278, 657, 920
PflFI GACNNNGTC 1 cut(s) 818
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 2 cut(s) 366, 889
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
Ppu21I YACGTR 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 860
PspGI CCWGG 1 cut(s) 860
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 814
PsyI GACNNNGTC 1 cut(s) 818
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 3 cut(s) 106, 483, 939
RsaNI GTAC 3 cut(s) 105, 482, 938
RseI CAYNNNNRTG 3 cut(s) 237, 459, 827
SaqAI TTAA 3 cut(s) 71, 431, 834
SatI GCNGC 2 cut(s) 365, 888
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 814
ScaI AGTACT 1 cut(s) 483
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 2 cut(s) 862, 932
SfaNI GCATC 5 cut(s) 218, 505, 541, 776, 933
SinI GGWCC 1 cut(s) 814
SmiMI CAYNNNNRTG 3 cut(s) 237, 459, 827
Sse9I AATT 4 cut(s) 73, 113, 392, 715
SsiI CCGC 1 cut(s) 627
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 860, 930
StyI CCWWGG 2 cut(s) 321, 559
TaaI ACNGT 2 cut(s) 109, 245
TaiI ACGT 2 cut(s) 459, 511
TaqI TCGA 2 cut(s) 300, 549
TasI AATT 4 cut(s) 73, 113, 392, 715
TatI WGTACW 2 cut(s) 104, 481
TfiI GAWTC 6 cut(s) 46, 147, 254, 278, 657, 920
Tru1I TTAA 3 cut(s) 71, 431, 834
Tru9I TTAA 3 cut(s) 71, 431, 834
TscAI CASTG 5 cut(s) 157, 244, 374, 696, 733
TseFI GTSAC 2 cut(s) 239, 820
TseI GCWGC 2 cut(s) 364, 887
Tsp45I GTSAC 2 cut(s) 239, 820
TspDTI ATGAA 1 cut(s) 59
TspRI CASTG 5 cut(s) 157, 244, 374, 696, 733
Tth111I GACNNNGTC 1 cut(s) 818
Van91I CCANNNNNTGG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 814
XapI RAATTY 3 cut(s) 73, 392, 715
XceI RCATGY 2 cut(s) 447, 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 702
XspI CTAG 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 483
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.