Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012527_4311101_to_5153684

Orthogroup ID

OG0010369

Physical Location & Seq

Genomic Coordinates Forward (+)

84507 .. 88040

Gene Structure 3534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom5153684g00050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAAGCTTTCCACCCCCAACTTCATCCCCAACACATGATAAGACTTCCTCTCTCCTTCTCTTCCAAACTCAACCTCAATCGGTGTTTTTGGCTTTACTCTCACTCGACGACACCCTTCTCCTCTGCCTCCGCTTCCGGGGATGGGGTTAAGGCCGCCACCGCCGCCAAGGTCTCCGACGCTGCTCAGCTTAAACACAACTGGTTGGCCTCTCTCTCGTGCCCTTTTCCTCACGCCCCTGATTCCTTGGATTCGACCCGTACCAATTCGGATTCCAGTTGGGTCATTGGGGTCGACCCGGATGTTTCTGGTGCTTTGGCCCTCTTGAAAGCGGATGATGATGACCCAACTTCTTCTTCTGCTCAGGTATATGACTCTCCACATTTGAAAGTGCTGGTTGGTAAAAGAGTTCGCAGGCGTTTAGATGCAAAATCTATTGTTCAGTTGCTCAGCAGTTTTGATGCTCCTCCCGGTACGGTTGCATATGTGGAGCAGTCGACCCCCTTTCCACAAGATGGAAAGCAGGGATGGTGGAGTGGAGGTTTTGGGTATGGACTATGGATTGGAATCTTAGTTGCGATGGGGTTTTCTGTTGTTCCAGTGTCATCTGTTTCGTGGAAGAGCAAATTTGAAATCAGCGGAAGTATGTATACAAAGGATGATAGCCGGAGGGTTGCGTCTGCATTATTTCCATCATTGAAGCCCATGTTGGCAAGGAAAAAAGATCACGGGAGGGCCGATGCCCTACTCATTGCCGCATACGGAAAGGGGATGGAGGTTAAGTCAGACTTATCATCCAACCCAGAGGTATTTGTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

29.53

Weight (kDa)

8.77

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26840 AT2G26840
fragaria_vesca	FvH4_2g35650
malus_domestica	MD00G1134800.v1.1 MD00G1148000.v1.1
prunus_persica	Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1
pyrus_communis	pycom12561g00250 pycom5153684g00050
rosa_chinensis	RchiOBHm_Chr5g0050271
rosa_laevigata	RLG00000034692
rosa_multiflora	Rmu_sc0000889.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030760
rosa_rugosa	Rorug05G0259800
rosa_samantha	Rh5AG331300 Rh5BG341900 Rh5CG369000 Rh5DG354800
rosa_wichuraiana	Rw5G031310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	515
AccI	GTMKAC	3 cut(s)	294, 497, 650
AciI	CCGC	7 cut(s)	132, 156, 162, 165, 332, 639, 756
AcsI	RAATTY	1 cut(s)	626
AfaI	GTAC	2 cut(s)	262, 475
AfiI	CCNNNNNNNGG	3 cut(s)	138, 144, 515
AgsI	TTSAA	4 cut(s)	328, 388, 632, 700
AjuI	GAANNNNNNNTTGG	4 cut(s)	340, 372, 692, 724
AluBI	AGCT	2 cut(s)	8, 190
AluI	AGCT	2 cut(s)	8, 190
Alw26I	GTCTC	1 cut(s)	178
AoxI	GGCC	4 cut(s)	153, 207, 318, 735
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	626
AspS9I	GGNCC	2 cut(s)	319, 735
AsuC2I	CCSGG	3 cut(s)	139, 299, 471
BaeGI	GKGCMC	1 cut(s)	224
BarI	GAAGNNNNNNTAC	2 cut(s)	634, 666
BauI	CACGAG	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	6 cut(s)	137, 509, 522, 574, 700, 766
BcnI	CCSGG	3 cut(s)	139, 299, 471
BcoDI	GTCTC	1 cut(s)	178
BisI	GCNGC	4 cut(s)	156, 165, 183, 756
BlpI	GCTNAGC	2 cut(s)	186, 449
BlsI	GCNGC	4 cut(s)	157, 166, 184, 757
Bme1390I	CCNGG	3 cut(s)	139, 299, 471
BmgT120I	GGNCC	2 cut(s)	319, 735
BmrFI	CCNGG	3 cut(s)	139, 299, 471
BmsI	GCATC	3 cut(s)	415, 451, 730
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu1102I	GCTNAGC	2 cut(s)	186, 449
BpuMI	CCSGG	3 cut(s)	139, 299, 471
BsaBI	GATNNNNATC	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	3 cut(s)	138, 168, 246
BsaXI	ACNNNNNCTCC	4 cut(s)	526, 556, 767, 797
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 144, 515
Bse1I	ACTGG	3 cut(s)	206, 276, 599
Bse3DI	GCAATG	1 cut(s)	750
Bse8I	GATNNNNATC	1 cut(s)	566
BseDI	CCNNGG	3 cut(s)	138, 168, 246
BseGI	GGATG	8 cut(s)	25, 148, 307, 340, 533, 664, 777, 794
BseJI	GATNNNNATC	1 cut(s)	566
BseLI	CCNNNNNNNGG	3 cut(s)	138, 144, 515
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	3 cut(s)	200, 377, 463
BseNI	ACTGG	3 cut(s)	206, 276, 599
BseRI	GAGGAG	2 cut(s)	112, 456
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	4 cut(s)	155, 209, 320, 737
BsiSI	CCGG	4 cut(s)	138, 299, 471, 667
BslI	CCNNNNNNNGG	3 cut(s)	138, 144, 515
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	4 cut(s)	155, 209, 320, 737
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	724
Bsp1720I	GCTNAGC	2 cut(s)	186, 449
BspACI	CCGC	7 cut(s)	132, 156, 162, 165, 332, 639, 756
BspANI	GGCC	4 cut(s)	155, 209, 320, 737
BspCNI	CTCAG	3 cut(s)	199, 376, 462
BspQI	GCTCTTC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	750
BsrI	ACTGG	3 cut(s)	206, 276, 599
BssECI	CCNNGG	3 cut(s)	138, 168, 246
BssMI	GATC	1 cut(s)	724
BssNAI	GTATAC	1 cut(s)	651
BssSI	CACGAG	1 cut(s)	217
BssT1I	CCWWGG	2 cut(s)	168, 246
Bst1107I	GTATAC	1 cut(s)	651
Bst2BI	CACGAG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	2 cut(s)	67, 614
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	4 cut(s)	186, 363, 449, 571
BstF5I	GGATG	8 cut(s)	25, 148, 307, 340, 533, 664, 777, 794
BstKTI	GATC	1 cut(s)	727
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	724
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 164
BstSCI	CCNGG	3 cut(s)	137, 297, 469
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	169
BstZ17I	GTATAC	1 cut(s)	651
BsuRI	GGCC	4 cut(s)	155, 209, 320, 737
BtgZI	GCGATG	1 cut(s)	593
BtsCI	GGATG	8 cut(s)	25, 148, 307, 340, 533, 664, 777, 794
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	1 cut(s)	416
Cfr13I	GGNCC	2 cut(s)	319, 735
CseI	GACGC	2 cut(s)	188, 666
Csp6I	GTAC	2 cut(s)	261, 474
CviAII	CATG	2 cut(s)	37, 706
CviJI	RGCY	9 cut(s)	8, 94, 155, 190, 209, 320, 666, 703, 737
CviKI_1	RGCY	9 cut(s)	8, 94, 155, 190, 209, 320, 666, 703, 737
CviQI	GTAC	2 cut(s)	261, 474
DdeI	CTNAG	4 cut(s)	186, 363, 449, 571
DpnI	GATC	1 cut(s)	726
DpnII	GATC	1 cut(s)	724
Eam1104I	CTCTTC	2 cut(s)	67, 614
EarI	CTCTTC	2 cut(s)	67, 614
Eco130I	CCWWGG	2 cut(s)	168, 246
Eco31I	GGTCTC	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	168, 246
ErhI	CCWWGG	2 cut(s)	168, 246
FaeI	CATG	2 cut(s)	40, 709
FalI	AAGNNNNNCTT	2 cut(s)	773, 805
FatI	CATG	2 cut(s)	36, 705
FauNDI	CATATG	1 cut(s)	484
FblI	GTMKAC	3 cut(s)	294, 497, 650
Fnu4HI	GCNGC	4 cut(s)	156, 165, 183, 756
FokI	GGATG	8 cut(s)	12, 155, 314, 347, 540, 671, 781, 784
Fsp4HI	GCNGC	4 cut(s)	156, 165, 183, 756
GluI	GCNGC	4 cut(s)	156, 165, 183, 756
HaeIII	GGCC	4 cut(s)	155, 209, 320, 737
HapII	CCGG	4 cut(s)	138, 299, 471, 667
HgaI	GACGC	2 cut(s)	188, 666
Hin1II	CATG	2 cut(s)	40, 709
HincII	GTYRAC	2 cut(s)	295, 498
HindII	GTYRAC	2 cut(s)	295, 498
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	5 cut(s)	242, 251, 272, 374, 567
HpaII	CCGG	4 cut(s)	138, 299, 471, 667
Hpy166II	GTNNAC	3 cut(s)	295, 498, 651
Hpy188I	TCNGA	3 cut(s)	178, 271, 787
Hpy188III	TCNNGA	1 cut(s)	325
Hpy8I	GTNNAC	3 cut(s)	295, 498, 651
Hpy99I	CGWCG	2 cut(s)	112, 182
HpyAV	CCTTC	2 cut(s)	67, 127
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	3 cut(s)	428, 482, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 164
HpyF3I	CTNAG	4 cut(s)	186, 363, 449, 571
Hsp92II	CATG	2 cut(s)	40, 709
Kzo9I	GATC	1 cut(s)	724
LguI	GCTCTTC	1 cut(s)	614
LmnI	GCTCC	2 cut(s)	469, 490
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	3 cut(s)	415, 451, 730
MaeIII	GTNAC	1 cut(s)	814
MalI	GATC	1 cut(s)	726
MboI	GATC	1 cut(s)	724
MboII	GAAGA	4 cut(s)	54, 345, 348, 631
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	2 cut(s)	265, 626
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	2 cut(s)	201, 822
MseI	TTAA	3 cut(s)	150, 192, 780
MspA1I	CMGCKG	1 cut(s)	639
MspI	CCGG	4 cut(s)	138, 299, 471, 667
MspR9I	CCNGG	3 cut(s)	139, 299, 471
MwoI	GCNNNNNNNGC	2 cut(s)	161, 164
NciI	CCSGG	3 cut(s)	139, 299, 471
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	1 cut(s)	724
NlaIII	CATG	2 cut(s)	40, 709
PciSI	GCTCTTC	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	1 cut(s)	735
PfeI	GAWTC	4 cut(s)	242, 251, 272, 567
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	4 cut(s)	157, 166, 184, 757
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PspPI	GGNCC	2 cut(s)	319, 735
RsaI	GTAC	2 cut(s)	262, 475
RsaNI	GTAC	2 cut(s)	261, 474
SalI	GTCGAC	2 cut(s)	293, 496
SapI	GCTCTTC	1 cut(s)	614
SaqAI	TTAA	3 cut(s)	150, 192, 780
SatI	GCNGC	4 cut(s)	156, 165, 183, 756
Sau3AI	GATC	1 cut(s)	724
Sau96I	GGNCC	2 cut(s)	319, 735
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	3 cut(s)	139, 299, 471
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	8 cut(s)	10, 78, 174, 192, 369, 544, 780, 810
SfaNI	GCATC	3 cut(s)	415, 451, 730
Sse9I	AATT	2 cut(s)	265, 626
SsiI	CCGC	7 cut(s)	132, 156, 162, 165, 332, 639, 756
StyD4I	CCNGG	3 cut(s)	137, 297, 469
StyI	CCWWGG	2 cut(s)	168, 246
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	4 cut(s)	107, 254, 294, 497
TasI	AATT	2 cut(s)	265, 626
TauI	GCSGC	3 cut(s)	158, 167, 758
TfiI	GAWTC	4 cut(s)	242, 251, 272, 567
Tru1I	TTAA	3 cut(s)	150, 192, 780
Tru9I	TTAA	3 cut(s)	150, 192, 780
TscAI	CASTG	1 cut(s)	606
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	14
TspGWI	ACGGA	1 cut(s)	777
TspRI	CASTG	1 cut(s)	606
Van91I	CCANNNNNTGG	1 cut(s)	515
XapI	RAATTY	1 cut(s)	626
XmiI	GTMKAC	3 cut(s)	294, 497, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.