Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010369

Physical Location & Seq

Genomic Coordinates Reverse (-)

51459293 .. 51465092

Gene Structure 5800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG341900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAACACCATCTCCAACTGATAAGAACACATAACCAACTCATGAATCTGAGACCCAATTACCCATTGTTAAATTCAGTTTGCTCTCAGCTCAGACCCTTGTGTACTGTTGAATTATGTCCAACAAAGCCGATTAAGAGTTCAAGAATCAGTGTCGGGAGGGTTAGGGATAAGGTCTCTGACGCTCAGCTCAAAGACAACTGGTTGGCATCTCTCTCTTGCCCCTTTCCTCACATCAGTGACGGTGAACAAGATTCAATCCCAACCAATAGTTCGGATTCCAGTTGGGTCTTTGGGATCGACCCAGATGTTTCTGGTGCCTTGGCGCTTTTGAAGGGCAATCACTCTGCTTCTTCTGCCCAGGTATATGACTCCCCACACTTGAAAGTACTTGTTGGTAAAAGTGTTCGCAGACGTTTAGATGCAAAATCTATCGTTCAGTTGCTTAGCAGTTTCGATGCTCCCCTTGGTTCAACGGCATACTTAGAGCAATCAACGCCGTATCCACAAGATGGAAAGCAGGGTTGGTGGAGCGGAGGTTTTGGATATGGACTATGGATTGGAATCTTAGTCGGCTTGGGTTTTTCCGTTGTTCCAGTGCCATCTCTTCTGTGGAAGAAGAATTTTGAACTCACTGGAAGCATGTCAACAAAGGATGATAGCCGGAGGGTTGCATCTGCATTATTTCCGTCTTTGAGTTCAGAGTTGAGAAGAAAAAAGGACCATGGGAGGGCTGAAGCTCTACTCATTGCTGCGTATGGAAAAGGGCTAAAGTTGAAGTCAGAATCATGCAACCCGGAGGTGCTGATGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

29.68

Weight (kDa)

9.18

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26840 AT2G26840
fragaria_vesca	FvH4_2g35650
malus_domestica	MD00G1134800.v1.1 MD00G1148000.v1.1
prunus_persica	Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1
pyrus_communis	pycom12561g00250 pycom5153684g00050
rosa_chinensis	RchiOBHm_Chr5g0050271
rosa_laevigata	RLG00000034692
rosa_multiflora	Rmu_sc0000889.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030760
rosa_rugosa	Rorug05G0259800
rosa_samantha	Rh5AG331300 Rh5BG341900 Rh5CG369000 Rh5DG354800
rosa_wichuraiana	Rw5G031310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	534
AciI	CCGC	1 cut(s)	534
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	2 cut(s)	73, 622
AcuI	CTGAAG	1 cut(s)	756
AfaI	GTAC	2 cut(s)	106, 390
AfiI	CCNNNNNNNGG	2 cut(s)	512, 730
AgsI	TTSAA	8 cut(s)	113, 144, 258, 334, 385, 474, 629, 778
AjnI	CCWGG	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	4 cut(s)	256, 288, 508, 540
AleI	CACNNNNGTG	1 cut(s)	237
AloI	GAACNNNNNNTCC	1 cut(s)	29
AluBI	AGCT	3 cut(s)	91, 190, 740
AluI	AGCT	3 cut(s)	91, 190, 740
Alw26I	GTCTC	2 cut(s)	46, 181
AlwI	GGATC	1 cut(s)	305
ApeKI	GCWGC	1 cut(s)	752
ApoI	RAATTY	2 cut(s)	73, 622
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	721
AsuC2I	CCSGG	1 cut(s)	797
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	721
BanI	GGYRCC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	3 cut(s)	18, 506, 610
BceAI	ACGGC	2 cut(s)	484, 492
BciT130I	CCWGG	1 cut(s)	362
BciVI	GTATCC	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	797
BcoDI	GTCTC	2 cut(s)	46, 181
BfoI	RGCGCY	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	513
BisI	GCNGC	1 cut(s)	753
BlpI	GCTNAGC	2 cut(s)	186, 446
BlsI	GCNGC	1 cut(s)	754
BmcAI	AGTACT	1 cut(s)	390
Bme1390I	CCNGG	2 cut(s)	362, 797
Bme18I	GGWCC	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	721
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	362, 797
BmsI	GCATC	5 cut(s)	218, 412, 448, 683, 798
Bpu1102I	GCTNAGC	2 cut(s)	186, 446
BpuMI	CCSGG	1 cut(s)	797
BsaBI	GATNNNNATC	1 cut(s)	563
BsaI	GGTCTC	2 cut(s)	46, 181
BsaJI	CCNNGG	4 cut(s)	321, 360, 466, 724
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 523, 553
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 730
Bse1I	ACTGG	4 cut(s)	206, 282, 596, 640
Bse3DI	GCAATG	1 cut(s)	747
Bse8I	GATNNNNATC	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	4 cut(s)	321, 360, 466, 724
BseGI	GGATG	1 cut(s)	661
BseJI	GATNNNNATC	1 cut(s)	563
BseLI	CCNNNNNNNGG	2 cut(s)	512, 730
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	4 cut(s)	41, 101, 106, 200
BseNI	ACTGG	4 cut(s)	206, 282, 596, 640
BseXI	GCAGC	1 cut(s)	739
BshNI	GGYRCC	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	664, 797
BslI	CCNNNNNNNGG	2 cut(s)	512, 730
BsmAI	GTCTC	2 cut(s)	46, 181
Bso31I	GGTCTC	2 cut(s)	46, 181
Bsp143I	GATC	1 cut(s)	297
Bsp1720I	GCTNAGC	2 cut(s)	186, 446
Bsp19I	CCATGG	1 cut(s)	724
BspACI	CCGC	1 cut(s)	534
BspCNI	CTCAG	4 cut(s)	42, 100, 105, 199
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	319
BspPI	GGATC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	317
BspTNI	GGTCTC	2 cut(s)	46, 181
BsrBI	CCGCTC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	747
BsrI	ACTGG	4 cut(s)	206, 282, 596, 640
BssECI	CCNNGG	4 cut(s)	321, 360, 466, 724
BssMI	GATC	1 cut(s)	297
BssT1I	CCWWGG	3 cut(s)	321, 466, 724
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	109, 245
Bst6I	CTCTTC	1 cut(s)	612
BstDEI	CTNAG	8 cut(s)	50, 87, 92, 186, 446, 484, 568, 813
BstDSI	CCRYGG	1 cut(s)	724
BstF5I	GGATG	1 cut(s)	661
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	2 cut(s)	46, 181
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 496
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	360, 795
BstV1I	GCAGC	1 cut(s)	739
BsuI	GTATCC	1 cut(s)	513
BtgI	CCRYGG	1 cut(s)	724
BtsCI	GGATG	1 cut(s)	661
BtsIMutI	CAGTG	4 cut(s)	157, 244, 603, 633
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	721
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	105, 389
CviAII	CATG	4 cut(s)	43, 643, 725, 789
CviJI	RGCY	8 cut(s)	91, 130, 190, 576, 663, 734, 740, 769
CviKI_1	RGCY	8 cut(s)	91, 130, 190, 576, 663, 734, 740, 769
CviQI	GTAC	2 cut(s)	105, 389
DdeI	CTNAG	8 cut(s)	50, 87, 92, 186, 446, 484, 568, 813
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Eco130I	CCWWGG	3 cut(s)	321, 466, 724
Eco31I	GGTCTC	2 cut(s)	46, 181
Eco47I	GGWCC	1 cut(s)	721
Eco57I	CTGAAG	1 cut(s)	756
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	3 cut(s)	321, 466, 724
ErhI	CCWWGG	3 cut(s)	321, 466, 724
FaeI	CATG	4 cut(s)	46, 646, 728, 792
FatI	CATG	4 cut(s)	42, 642, 724, 788
Fnu4HI	GCNGC	1 cut(s)	753
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	1 cut(s)	753
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	1 cut(s)	753
HaeII	RGCGCY	1 cut(s)	329
HapII	CCGG	2 cut(s)	664, 797
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	4 cut(s)	46, 646, 728, 792
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	7 cut(s)	46, 147, 254, 278, 371, 564, 785
HpaII	CCGG	2 cut(s)	664, 797
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	3 cut(s)	105, 248, 648
Hpy188I	TCNGA	6 cut(s)	51, 95, 181, 277, 703, 784
Hpy188III	TCNNGA	3 cut(s)	43, 144, 157
Hpy8I	GTNNAC	3 cut(s)	105, 248, 648
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	2 cut(s)	109, 245
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	4 cut(s)	425, 674, 680, 792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 496
HpyF3I	CTNAG	8 cut(s)	50, 87, 92, 186, 446, 484, 568, 813
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	4 cut(s)	46, 646, 728, 792
HspAI	GCGC	1 cut(s)	326
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	466, 531
Lsp1109I	GCAGC	1 cut(s)	739
LweI	GCATC	5 cut(s)	218, 412, 448, 683, 798
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	1 cut(s)	299
MbiI	CCGCTC	1 cut(s)	534
MboI	GATC	1 cut(s)	297
MboII	GAAGA	5 cut(s)	345, 599, 628, 631, 723
MluCI	AATT	4 cut(s)	58, 73, 113, 622
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	2 cut(s)	40, 146
MnlI	CCTC	6 cut(s)	153, 240, 530, 660, 723, 793
MseI	TTAA	2 cut(s)	71, 135
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	2 cut(s)	664, 797
MspR9I	CCNGG	2 cut(s)	362, 797
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	356, 496
NciI	CCSGG	1 cut(s)	797
NcoI	CCATGG	1 cut(s)	724
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	4 cut(s)	46, 646, 728, 792
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	646
OliI	CACNNNNGTG	1 cut(s)	237
PagI	TCATGA	1 cut(s)	42
PfeI	GAWTC	6 cut(s)	46, 147, 254, 278, 564, 785
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	1 cut(s)	754
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	721
RsaI	GTAC	2 cut(s)	106, 390
RsaNI	GTAC	2 cut(s)	105, 389
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	71, 135
SatI	GCNGC	1 cut(s)	753
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	1 cut(s)	721
ScaI	AGTACT	1 cut(s)	390
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	2 cut(s)	362, 797
SetI	ASST	8 cut(s)	93, 177, 192, 366, 418, 541, 742, 804
SfaNI	GCATC	5 cut(s)	218, 412, 448, 683, 798
SinI	GGWCC	1 cut(s)	721
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	4 cut(s)	58, 73, 113, 622
SsiI	CCGC	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	360, 795
StyI	CCWWGG	3 cut(s)	321, 466, 724
TaaI	ACNGT	2 cut(s)	109, 245
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	2 cut(s)	300, 456
TasI	AATT	4 cut(s)	58, 73, 113, 622
TatI	WGTACW	2 cut(s)	104, 388
TfiI	GAWTC	6 cut(s)	46, 147, 254, 278, 564, 785
Tru1I	TTAA	2 cut(s)	71, 135
Tru9I	TTAA	2 cut(s)	71, 135
TscAI	CASTG	4 cut(s)	157, 244, 603, 640
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	752
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	2 cut(s)	577, 678
TspRI	CASTG	4 cut(s)	157, 244, 603, 640
Van91I	CCANNNNNTGG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	721
XapI	RAATTY	2 cut(s)	73, 622
XceI	RCATGY	1 cut(s)	646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	609
ZrmI	AGTACT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.