Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000889.1

Orthogroup ID

OG0010369

Physical Location & Seq

Genomic Coordinates Forward (+)

18668 .. 24845

Gene Structure 6178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000889.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgaatctgagacccaataacccattgttaaattcagtttgctctcagctcagacccttgtgtagtgttgaattatgtccaacaaagccgattaagagttcaagaatcagtgtcgggagggttagggataaggtctctgacgctcagctcaaagacaactggttggcatctctctcttgcccctttcctcacatcagtgacggtgaacaagattcaatcccaaccaataattcggattccagttgggtctttgggatcgacccagatgtttctggtgccttggcgcttttgaagggcaatcactctgcttcttctgcccaggtatatgactccccacacttgaaagtacttgttggtaaaagtgttcgcagacgtttggatgcaaaatctattgttcagttgcttagcagtttcaatgcaccccttggttcaacggcatacttagagcaatcaacgccgtatccacaagatggaaagcagggttggtggagcggaggttttggatatggactatggattggaatcttagtcggcttgggtttttccgttgttccagtgccatctcttctgtggaagaagaattttgaactcactggaagcatgtcaacaaaggatgatagccggagggttgcatctgcattatttccatctttgagttcagagttgagaagaaaaaaggaccatgggagggctgaagctctactcattgctgcgtatggaaaagggctaaagttgaagttagaatcatgcaacccggaggtactgatgccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

27.92

Weight (kDa)

9.3

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26840 AT2G26840
fragaria_vesca	FvH4_2g35650
malus_domestica	MD00G1134800.v1.1 MD00G1148000.v1.1
prunus_persica	Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1
pyrus_communis	pycom12561g00250 pycom5153684g00050
rosa_chinensis	RchiOBHm_Chr5g0050271
rosa_laevigata	RLG00000034692
rosa_multiflora	Rmu_sc0000889.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030760
rosa_rugosa	Rorug05G0259800
rosa_samantha	Rh5AG331300 Rh5BG341900 Rh5CG369000 Rh5DG354800
rosa_wichuraiana	Rw5G031310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	492
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	2 cut(s)	31, 580
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	2 cut(s)	348, 762
AfiI	CCNNNNNNNGG	2 cut(s)	470, 688
AgsI	TTSAA	9 cut(s)	71, 102, 216, 292, 343, 415, 432, 587, 736
AjnI	CCWGG	1 cut(s)	318
AjuI	GAANNNNNNNTTGG	4 cut(s)	214, 246, 466, 498
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	3 cut(s)	49, 148, 698
AluI	AGCT	3 cut(s)	49, 148, 698
Alw26I	GTCTC	2 cut(s)	4, 139
AlwI	GGATC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	710
ApoI	RAATTY	2 cut(s)	31, 580
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	679
AsuC2I	CCSGG	1 cut(s)	755
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	3 cut(s)	464, 568, 655
BceAI	ACGGC	2 cut(s)	442, 450
BciT130I	CCWGG	1 cut(s)	320
BciVI	GTATCC	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	755
BcoDI	GTCTC	2 cut(s)	4, 139
BfoI	RGCGCY	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	471
BisI	GCNGC	1 cut(s)	711
BlpI	GCTNAGC	2 cut(s)	144, 404
BlsI	GCNGC	1 cut(s)	712
BmcAI	AGTACT	1 cut(s)	348
Bme1390I	CCNGG	2 cut(s)	320, 755
Bme18I	GGWCC	1 cut(s)	679
BmgT120I	GGNCC	1 cut(s)	679
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	320, 755
BmsI	GCATC	4 cut(s)	176, 370, 641, 756
Bpu1102I	GCTNAGC	2 cut(s)	144, 404
BpuMI	CCSGG	1 cut(s)	755
BsaBI	GATNNNNATC	1 cut(s)	521
BsaI	GGTCTC	2 cut(s)	4, 139
BsaJI	CCNNGG	4 cut(s)	279, 318, 424, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 688
Bse1I	ACTGG	4 cut(s)	164, 240, 554, 598
Bse3DI	GCAATG	1 cut(s)	705
Bse8I	GATNNNNATC	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	4 cut(s)	279, 318, 424, 682
BseGI	GGATG	2 cut(s)	385, 619
BseJI	GATNNNNATC	1 cut(s)	521
BseLI	CCNNNNNNNGG	2 cut(s)	470, 688
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	3 cut(s)	59, 64, 158
BseNI	ACTGG	4 cut(s)	164, 240, 554, 598
BseXI	GCAGC	1 cut(s)	697
BshNI	GGYRCC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	622, 755
BslI	CCNNNNNNNGG	2 cut(s)	470, 688
BsmAI	GTCTC	2 cut(s)	4, 139
Bso31I	GGTCTC	2 cut(s)	4, 139
Bsp143I	GATC	1 cut(s)	255
Bsp1720I	GCTNAGC	2 cut(s)	144, 404
Bsp19I	CCATGG	1 cut(s)	682
BspACI	CCGC	1 cut(s)	492
BspCNI	CTCAG	3 cut(s)	58, 63, 157
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	2 cut(s)	4, 139
BsrBI	CCGCTC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	4 cut(s)	164, 240, 554, 598
BssECI	CCNNGG	4 cut(s)	279, 318, 424, 682
BssMI	GATC	1 cut(s)	255
BssT1I	CCWWGG	3 cut(s)	279, 424, 682
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	570
BstDEI	CTNAG	8 cut(s)	8, 45, 50, 144, 404, 442, 526, 771
BstDSI	CCRYGG	1 cut(s)	682
BstF5I	GGATG	2 cut(s)	385, 619
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	1 cut(s)	258
BstMAI	GTCTC	2 cut(s)	4, 139
BstMBI	GATC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 454
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	318, 753
BstV1I	GCAGC	1 cut(s)	697
BsuI	GTATCC	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	682
BtsCI	GGATG	2 cut(s)	385, 619
BtsIMutI	CAGTG	4 cut(s)	115, 202, 561, 591
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	679
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	347, 761
CviAII	CATG	3 cut(s)	601, 683, 747
CviJI	RGCY	8 cut(s)	49, 88, 148, 534, 621, 692, 698, 727
CviKI_1	RGCY	8 cut(s)	49, 88, 148, 534, 621, 692, 698, 727
CviQI	GTAC	2 cut(s)	347, 761
DdeI	CTNAG	8 cut(s)	8, 45, 50, 144, 404, 442, 526, 771
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco130I	CCWWGG	3 cut(s)	279, 424, 682
Eco31I	GGTCTC	2 cut(s)	4, 139
Eco47I	GGWCC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	714
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	3 cut(s)	279, 424, 682
ErhI	CCWWGG	3 cut(s)	279, 424, 682
FaeI	CATG	3 cut(s)	604, 686, 750
FatI	CATG	3 cut(s)	600, 682, 746
Fnu4HI	GCNGC	1 cut(s)	711
FokI	GGATG	2 cut(s)	392, 626
Fsp4HI	GCNGC	1 cut(s)	711
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	1 cut(s)	711
HaeII	RGCGCY	1 cut(s)	287
HapII	CCGG	2 cut(s)	622, 755
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	604, 686, 750
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HinfI	GANTC	7 cut(s)	4, 105, 212, 236, 329, 522, 743
HpaII	CCGG	2 cut(s)	622, 755
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	206, 606
Hpy188I	TCNGA	5 cut(s)	9, 53, 139, 235, 661
Hpy188III	TCNNGA	2 cut(s)	102, 115
Hpy8I	GTNNAC	2 cut(s)	206, 606
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	5 cut(s)	383, 419, 632, 638, 750
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 454
HpyF3I	CTNAG	8 cut(s)	8, 45, 50, 144, 404, 442, 526, 771
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	3 cut(s)	604, 686, 750
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	4 cut(s)	176, 370, 641, 756
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	1 cut(s)	257
MbiI	CCGCTC	1 cut(s)	492
MboI	GATC	1 cut(s)	255
MboII	GAAGA	5 cut(s)	303, 557, 586, 589, 681
MluCI	AATT	4 cut(s)	31, 71, 229, 580
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	6 cut(s)	111, 198, 488, 618, 681, 751
MseI	TTAA	2 cut(s)	29, 93
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	2 cut(s)	622, 755
MspR9I	CCNGG	2 cut(s)	320, 755
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	314, 454
NciI	CCSGG	1 cut(s)	755
NcoI	CCATGG	1 cut(s)	682
NdeII	GATC	1 cut(s)	255
NlaIII	CATG	3 cut(s)	604, 686, 750
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	1 cut(s)	604
OliI	CACNNNNGTG	1 cut(s)	195
PfeI	GAWTC	6 cut(s)	4, 105, 212, 236, 522, 743
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	712
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	679
RsaI	GTAC	2 cut(s)	348, 762
RsaNI	GTAC	2 cut(s)	347, 761
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	29, 93
SatI	GCNGC	1 cut(s)	711
Sau3AI	GATC	1 cut(s)	255
Sau96I	GGNCC	1 cut(s)	679
ScaI	AGTACT	1 cut(s)	348
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	320, 755
SetI	ASST	8 cut(s)	51, 135, 150, 324, 376, 499, 700, 762
SfaNI	GCATC	4 cut(s)	176, 370, 641, 756
SinI	GGWCC	1 cut(s)	679
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	4 cut(s)	31, 71, 229, 580
SsiI	CCGC	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	318, 753
StyI	CCWWGG	3 cut(s)	279, 424, 682
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	1 cut(s)	258
TasI	AATT	4 cut(s)	31, 71, 229, 580
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	6 cut(s)	4, 105, 212, 236, 522, 743
Tru1I	TTAA	2 cut(s)	29, 93
Tru9I	TTAA	2 cut(s)	29, 93
TscAI	CASTG	4 cut(s)	115, 202, 561, 598
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	710
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	535
TspRI	CASTG	4 cut(s)	115, 202, 561, 598
Van91I	CCANNNNNTGG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	679
XapI	RAATTY	2 cut(s)	31, 580
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	567
ZrmI	AGTACT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.