Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010369

Physical Location & Seq

Genomic Coordinates Reverse (-)

18768228 .. 18773829

Gene Structure 5602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G260500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAACCCCTCCAACTCATTACACCAACTACACAAAACCAACCCATGACCTCACTCTCACTATCACTCTCTCTCTCTTCCAAACTCAAGCTCAAACGACCAAATCCATTCTGGTTTTCTTCTTACTCTCAGCTCAGAGCCTTTTCTTCTTACTCTCCACTATCTCCATCAAAGCCCATTTCCGCTTCAGGAAAGGGTGTTGGGGTTAGGGCCAAGGTCTCTGACGCTCAGCTCAAAGACAACTGGTTGGCTTCTCTCTCTTGCCCTTTTCCTCAAACCCGTGAAAACTTTGACGGCACTGCAGATTCGACCCGTACCAATTCGGATTCCAGTTGGGTCATTGGGGTCGACCCGGATCTTTCTGGTGCTTTGGCGCTCTTGAAAGGCGATGAGTCTGGTTGTTCTGCTCAGGTATATGACTCTCCACACTTGAAAATACTGGTTGGTAAAAGAGTTCGAAGACGATTGGATGCAAAATCCATTGTTCAGTTGCTTGGGAGTTTCGATGCTCCCCTTGGGACAGTTGCATATATAGAGCAGTCAAACCCGTATCCACAAGATGGAAAGCAGGGATGGTGGAGTGGAGGCTTTGGGTATGGACTATGGATTGGGATCTTAGTTGCCTTGGGGTTTTCTGTTGTTCCAGTATCATCTATTTCGTGGAAGAACAAATTTGAACTCACCGGAGGCATGTCTACAAAGGATGATAGCCGAAGGGTTGCGTCTGCATTATTTCCATCATTGAGTTCCATGTTGAAAAGGAAAAAAGATCATGGGAGGGCTGAGGCACTTCTCATTGCTGCATATGGAAAAGGGCTAAAGATAAAGTCAGACCTATCATGCAACCCAGAGGTATTGGTTCCCCAGATTGGCAGATTGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

31.8

Weight (kDa)

9.64

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26840 AT2G26840
fragaria_vesca	FvH4_2g35650
malus_domestica	MD00G1134800.v1.1 MD00G1148000.v1.1
prunus_persica	Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1
pyrus_communis	pycom12561g00250 pycom5153684g00050
rosa_chinensis	RchiOBHm_Chr5g0050271
rosa_laevigata	RLG00000034692
rosa_multiflora	Rmu_sc0000889.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030760
rosa_rugosa	Rorug05G0259800
rosa_samantha	Rh5AG331300 Rh5BG341900 Rh5CG369000 Rh5DG354800
rosa_wichuraiana	Rw5G031310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	560
AccI	GTMKAC	2 cut(s)	348, 695
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	2 cut(s)	363, 620
AcsI	RAATTY	1 cut(s)	671
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	2 cut(s)	560, 869
AgsI	TTSAA	4 cut(s)	382, 433, 677, 757
AluBI	AGCT	3 cut(s)	91, 133, 232
AluI	AGCT	3 cut(s)	91, 133, 232
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	363, 620
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	800
ApoI	RAATTY	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	673
AsuII	TTCGAA	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	466
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	1 cut(s)	787
BccI	CCATC	4 cut(s)	175, 554, 567, 745
BceAI	ACGGC	1 cut(s)	310
BciVI	GTATCC	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	223
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	561
BisI	GCNGC	1 cut(s)	801
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	802
Bme1390I	CCNGG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	6, 861
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	2 cut(s)	460, 496
BpiI	GAAGAC	1 cut(s)	466
Bpu10I	CCTNAGC	2 cut(s)	408, 783
Bpu1102I	GCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	457
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	611
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	3 cut(s)	213, 514, 624
BsaWI	WCCGGW	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	2 cut(s)	560, 869
Bse1I	ACTGG	4 cut(s)	248, 330, 444, 644
Bse3DI	GCAATG	1 cut(s)	795
Bse8I	GATNNNNATC	1 cut(s)	611
BseDI	CCNNGG	3 cut(s)	213, 514, 624
BseGI	GGATG	3 cut(s)	475, 578, 709
BseJI	GATNNNNATC	1 cut(s)	611
BseLI	CCNNNNNNNGG	2 cut(s)	560, 869
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	5 cut(s)	143, 148, 242, 422, 774
BseNI	ACTGG	4 cut(s)	248, 330, 444, 644
BseXI	GCAGC	1 cut(s)	787
BshFI	GGCC	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	353, 684
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	560, 869
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	532
BsnI	GGCC	1 cut(s)	212
Bso31I	GGTCTC	1 cut(s)	223
Bsp119I	TTCGAA	1 cut(s)	457
Bsp143I	GATC	3 cut(s)	355, 612, 769
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	5 cut(s)	142, 147, 241, 421, 775
BspLI	GGNNCC	2 cut(s)	6, 861
BspMAI	CTGCAG	1 cut(s)	304
BspPI	GGATC	2 cut(s)	363, 620
BspT104I	TTCGAA	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	795
BsrI	ACTGG	4 cut(s)	248, 330, 444, 644
BssECI	CCNNGG	3 cut(s)	213, 514, 624
BssMI	GATC	3 cut(s)	355, 612, 769
BssT1I	CCWWGG	3 cut(s)	213, 514, 624
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	1 cut(s)	82
BstBI	TTCGAA	1 cut(s)	457
BstDEI	CTNAG	6 cut(s)	129, 134, 228, 408, 616, 783
BstF5I	GGATG	3 cut(s)	475, 578, 709
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	3 cut(s)	358, 615, 772
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	355, 612, 769
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	787
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	2 cut(s)	355, 612
BstYI	RGATCY	2 cut(s)	355, 612
BsuI	GTATCC	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	212
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	475, 578, 709
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	297
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	210
CseI	GACGC	2 cut(s)	233, 711
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	5 cut(s)	46, 691, 751, 773, 840
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	6 cut(s)	129, 134, 228, 408, 616, 783
DpnI	GATC	3 cut(s)	357, 614, 771
DpnII	GATC	3 cut(s)	355, 612, 769
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	3 cut(s)	213, 514, 624
Eco31I	GGTCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	171
EcoT14I	CCWWGG	3 cut(s)	213, 514, 624
ErhI	CCWWGG	3 cut(s)	213, 514, 624
FaeI	CATG	5 cut(s)	49, 694, 754, 776, 843
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	5 cut(s)	45, 690, 750, 772, 839
FauNDI	CATATG	1 cut(s)	805
FblI	GTMKAC	2 cut(s)	348, 695
Fnu4HI	GCNGC	1 cut(s)	801
FokI	GGATG	3 cut(s)	482, 585, 716
Fsp4HI	GCNGC	1 cut(s)	801
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	801
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	2 cut(s)	353, 684
HgaI	GACGC	2 cut(s)	233, 711
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	5 cut(s)	49, 694, 754, 776, 843
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	4 cut(s)	305, 326, 392, 419
HpaII	CCGG	2 cut(s)	353, 684
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	2 cut(s)	349, 696
Hpy188I	TCNGA	4 cut(s)	137, 223, 325, 832
Hpy188III	TCNNGA	2 cut(s)	189, 379
Hpy8I	GTNNAC	2 cut(s)	349, 696
HpyAV	CCTTC	1 cut(s)	708
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4V	TGCA	6 cut(s)	302, 473, 527, 728, 803, 843
HpyF3I	CTNAG	6 cut(s)	129, 134, 228, 408, 616, 783
Hsp92II	CATG	5 cut(s)	49, 694, 754, 776, 843
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	3 cut(s)	355, 612, 769
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	1 cut(s)	787
LweI	GCATC	2 cut(s)	460, 496
MalI	GATC	3 cut(s)	357, 614, 771
MboI	GATC	3 cut(s)	355, 612, 769
MboII	GAAGA	5 cut(s)	69, 111, 138, 471, 676
MflI	RGATCY	2 cut(s)	355, 612
MluCI	AATT	2 cut(s)	319, 671
MlyI	GAGTC	2 cut(s)	401, 413
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	8 cut(s)	20, 61, 282, 578, 680, 771, 778, 844
MspI	CCGG	2 cut(s)	353, 684
MspR9I	CCNGG	1 cut(s)	353
NciI	CCSGG	1 cut(s)	353
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	3 cut(s)	355, 612, 769
NlaIII	CATG	5 cut(s)	49, 694, 754, 776, 843
NlaIV	GGNNCC	2 cut(s)	6, 861
NspI	RCATGY	1 cut(s)	694
NspV	TTCGAA	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	305, 326
PflMI	CCANNNNNTGG	1 cut(s)	560
PkrI	GCNGC	1 cut(s)	802
PleI	GAGTC	2 cut(s)	400, 413
PpsI	GAGTC	2 cut(s)	400, 413
PspN4I	GGNNCC	2 cut(s)	6, 861
PspPI	GGNCC	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	355, 612
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SalI	GTCGAC	1 cut(s)	347
SatI	GCNGC	1 cut(s)	801
Sau3AI	GATC	3 cut(s)	355, 612, 769
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	2 cut(s)	401, 413
ScrFI	CCNGG	1 cut(s)	353
SetI	ASST	8 cut(s)	53, 93, 135, 219, 234, 414, 837, 855
SfaNI	GCATC	2 cut(s)	460, 496
SfcI	CTRYAG	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	457
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	319, 671
SsiI	CCGC	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	3 cut(s)	213, 514, 624
TaaI	ACNGT	1 cut(s)	523
TaqI	TCGA	4 cut(s)	308, 348, 457, 504
TasI	AATT	2 cut(s)	319, 671
TfiI	GAWTC	2 cut(s)	305, 326
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	1 cut(s)	800
TspRI	CASTG	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	671
XceI	RCATGY	1 cut(s)	694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmiI	GTMKAC	2 cut(s)	348, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.