Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012561

Orthogroup ID

OG0010369

Physical Location & Seq

Genomic Coordinates Reverse (-)

334630 .. 337651

Gene Structure 3022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12561g00250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAAGCTGTCAACCGCCAACTTCATCCCCAACTCATGATAAGACCTTATCTCTCATTCTCTTCCAAATTCAACCTCAAATGGTGTTTTTCTCTTTACTCTCACTCGACGACACCCTTCTCCTCCGCTTCCGCTTCAACAAAATCCGTAGGGGTTGGTGATAGGGCCGCCGCCGCCAAGGTTTCCGACGCTGCTCAGCTCAAACACAACTGGTTGGCCTCTCTCTCTTGCCCTTTTCCTCAGAACCCAGACACCTTGGATTCGACCAGTACCAATTCGGATTCCAGTTGGGTCATTGGGGTCGACCCGGATGTTTCTGGTGCTTTAGCCCTCTTGAAAGGGGATGATGACCCCGCTTCTTCTTCGGCTCAGGTATATGACTCTCCACATTTAAAAGTTCTGGTGGGTAAAAGAGTTCGGAGGCGTTTAGATGCAAAGTCTATTGTTCAGTTGCTCAGCAGTTTCGATGCTCCTCCTGGCACGGTTGCATATGTAGAGCAGTCGACCCCCTTTCCAAAAGATGGAAAGCAGGGATGGTGGAGTGGAGGTTTCGGGTATGGACTATGGATTGGGATCTTAGTTGCCATGGGGTTTTCGGTTGTTCCAGTGTCATCTATTTTGTGGAAGAACAAATTTGAAATCAGTGGAAGCATGTATACAAAGGATGATAGCCGGAGGGTTGCGTCTGCATTATTTCCATCATTGAGTTCCATGTTGGAAAGGAAAAAAGATCACGGGAGGGCTGATGCACTACTCATTGCCGCATACGGAAAGGGGATAAAGTCAGACTTATCATCCAATCCAGAGATACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

29.28

Weight (kDa)

9.11

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26840 AT2G26840
fragaria_vesca	FvH4_2g35650
malus_domestica	MD00G1134800.v1.1 MD00G1148000.v1.1
prunus_persica	Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1 Prupe.4G260500_v2.0.a1
pyrus_communis	pycom12561g00250 pycom5153684g00050
rosa_chinensis	RchiOBHm_Chr5g0050271
rosa_laevigata	RLG00000034692
rosa_multiflora	Rmu_sc0000889.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030760
rosa_rugosa	Rorug05G0259800
rosa_samantha	Rh5AG331300 Rh5BG341900 Rh5CG369000 Rh5DG354800
rosa_wichuraiana	Rw5G031310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccI	GTMKAC	3 cut(s)	303, 503, 656
AciI	CCGC	8 cut(s)	16, 126, 132, 168, 171, 174, 354, 762
AclWI	GGATC	1 cut(s)	581
AcsI	RAATTY	2 cut(s)	68, 632
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	73, 138, 337, 638
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	2 cut(s)	8, 199
AluI	AGCT	2 cut(s)	8, 199
AlwI	GGATC	1 cut(s)	581
AoxI	GGCC	2 cut(s)	165, 216
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	2 cut(s)	68, 632
AspS9I	GGNCC	1 cut(s)	165
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	170
BarI	GAAGNNNNNNTAC	2 cut(s)	640, 672
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	3 cut(s)	515, 528, 706
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	308
BisI	GCNGC	5 cut(s)	168, 171, 174, 192, 762
BlpI	GCTNAGC	2 cut(s)	195, 455
BlsI	GCNGC	5 cut(s)	169, 172, 175, 193, 763
Bme1390I	CCNGG	2 cut(s)	308, 477
BmgT120I	GGNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	308, 477
BmsI	GCATC	3 cut(s)	421, 457, 736
Bpu10I	CCTNAGC	1 cut(s)	369
Bpu1102I	GCTNAGC	2 cut(s)	195, 455
BpuMI	CCSGG	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	572
BsaJI	CCNNGG	3 cut(s)	177, 255, 585
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse1I	ACTGG	4 cut(s)	215, 267, 285, 605
Bse3DI	GCAATG	1 cut(s)	756
Bse8I	GATNNNNATC	1 cut(s)	572
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	3 cut(s)	177, 255, 585
BseGI	GGATG	6 cut(s)	25, 316, 349, 539, 670, 794
BseJI	GATNNNNATC	1 cut(s)	572
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	4 cut(s)	209, 254, 383, 469
BseNI	ACTGG	4 cut(s)	215, 267, 285, 605
BseRI	GAGGAG	2 cut(s)	112, 462
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	2 cut(s)	167, 218
BsiSI	CCGG	2 cut(s)	308, 673
BslI	CCNNNNNNNGG	1 cut(s)	521
BsnI	GGCC	2 cut(s)	167, 218
Bsp143I	GATC	2 cut(s)	573, 730
Bsp1720I	GCTNAGC	2 cut(s)	195, 455
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	8 cut(s)	16, 126, 132, 168, 171, 174, 354, 762
BspANI	GGCC	2 cut(s)	167, 218
BspCNI	CTCAG	4 cut(s)	208, 253, 382, 468
BspHI	TCATGA	1 cut(s)	36
BspPI	GGATC	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	756
BsrI	ACTGG	4 cut(s)	215, 267, 285, 605
BssECI	CCNNGG	3 cut(s)	177, 255, 585
BssMI	GATC	2 cut(s)	573, 730
BssNAI	GTATAC	1 cut(s)	657
BssT1I	CCWWGG	3 cut(s)	177, 255, 585
Bst1107I	GTATAC	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	67
BstDEI	CTNAG	5 cut(s)	195, 240, 369, 455, 577
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	6 cut(s)	25, 316, 349, 539, 670, 794
BstKTI	GATC	2 cut(s)	576, 733
BstMBI	GATC	2 cut(s)	573, 730
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	477
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	2 cut(s)	306, 475
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	573
BstZ17I	GTATAC	1 cut(s)	657
BsuRI	GGCC	2 cut(s)	167, 218
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	6 cut(s)	25, 316, 349, 539, 670, 794
BtsIMutI	CAGTG	2 cut(s)	612, 649
CciI	TCATGA	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	165
CseI	GACGC	2 cut(s)	197, 672
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	4 cut(s)	37, 586, 652, 712
CviJI	RGCY	8 cut(s)	8, 167, 199, 218, 329, 368, 672, 743
CviKI_1	RGCY	8 cut(s)	8, 167, 199, 218, 329, 368, 672, 743
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	5 cut(s)	195, 240, 369, 455, 577
DpnI	GATC	2 cut(s)	575, 732
DpnII	GATC	2 cut(s)	573, 730
DraI	TTTAAA	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco130I	CCWWGG	3 cut(s)	177, 255, 585
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	3 cut(s)	177, 255, 585
ErhI	CCWWGG	3 cut(s)	177, 255, 585
FaeI	CATG	4 cut(s)	40, 589, 655, 715
FalI	AAGNNNNNCTT	2 cut(s)	773, 805
FatI	CATG	4 cut(s)	36, 585, 651, 711
FauI	CCCGC	1 cut(s)	361
FauNDI	CATATG	1 cut(s)	490
FblI	GTMKAC	3 cut(s)	303, 503, 656
Fnu4HI	GCNGC	5 cut(s)	168, 171, 174, 192, 762
FokI	GGATG	6 cut(s)	12, 323, 356, 546, 677, 781
Fsp4HI	GCNGC	5 cut(s)	168, 171, 174, 192, 762
GluI	GCNGC	5 cut(s)	168, 171, 174, 192, 762
HaeIII	GGCC	2 cut(s)	167, 218
HapII	CCGG	2 cut(s)	308, 673
HgaI	GACGC	2 cut(s)	197, 672
Hin1II	CATG	4 cut(s)	40, 589, 655, 715
HincII	GTYRAC	3 cut(s)	13, 304, 504
HindII	GTYRAC	3 cut(s)	13, 304, 504
HinfI	GANTC	3 cut(s)	260, 281, 380
HpaII	CCGG	2 cut(s)	308, 673
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	4 cut(s)	13, 304, 504, 657
Hpy188I	TCNGA	5 cut(s)	187, 243, 280, 420, 787
Hpy188III	TCNNGA	3 cut(s)	37, 334, 803
Hpy8I	GTNNAC	4 cut(s)	13, 304, 504, 657
Hpy99I	CGWCG	2 cut(s)	112, 191
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4V	TGCA	4 cut(s)	434, 488, 689, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	5 cut(s)	195, 240, 369, 455, 577
Hsp92II	CATG	4 cut(s)	40, 589, 655, 715
Kzo9I	GATC	2 cut(s)	573, 730
LmnI	GCTCC	1 cut(s)	475
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	3 cut(s)	421, 457, 736
MalI	GATC	2 cut(s)	575, 732
MboI	GATC	2 cut(s)	573, 730
MboII	GAAGA	4 cut(s)	54, 351, 354, 637
MflI	RGATCY	1 cut(s)	573
MluCI	AATT	3 cut(s)	68, 274, 632
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	2 cut(s)	210, 696
MseI	TTAA	1 cut(s)	392
MspI	CCGG	2 cut(s)	308, 673
MspR9I	CCNGG	2 cut(s)	308, 477
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	173
NciI	CCSGG	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	585
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	2 cut(s)	573, 730
NlaIII	CATG	4 cut(s)	40, 589, 655, 715
NspI	RCATGY	1 cut(s)	655
PagI	TCATGA	1 cut(s)	36
PfeI	GAWTC	2 cut(s)	260, 281
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	5 cut(s)	169, 172, 175, 193, 763
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	573
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SalI	GTCGAC	2 cut(s)	302, 502
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	5 cut(s)	168, 171, 174, 192, 762
Sau3AI	GATC	2 cut(s)	573, 730
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	2 cut(s)	308, 477
SetI	ASST	8 cut(s)	10, 49, 78, 183, 201, 257, 375, 550
SfaNI	GCATC	3 cut(s)	421, 457, 736
Sse9I	AATT	3 cut(s)	68, 274, 632
SsiI	CCGC	8 cut(s)	16, 126, 132, 168, 171, 174, 354, 762
StyD4I	CCNGG	2 cut(s)	306, 475
StyI	CCWWGG	3 cut(s)	177, 255, 585
TaaI	ACNGT	1 cut(s)	484
TaqI	TCGA	5 cut(s)	107, 263, 303, 465, 503
TasI	AATT	3 cut(s)	68, 274, 632
TauI	GCSGC	4 cut(s)	170, 173, 176, 764
TfiI	GAWTC	2 cut(s)	260, 281
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	2 cut(s)	612, 649
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	14
TspGWI	ACGGA	2 cut(s)	136, 783
TspRI	CASTG	2 cut(s)	612, 649
Van91I	CCANNNNNTGG	1 cut(s)	521
XapI	RAATTY	2 cut(s)	68, 632
XceI	RCATGY	1 cut(s)	655
XmiI	GTMKAC	3 cut(s)	303, 503, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.