FvH4_2g36790

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008371
Physical Location & Seq
Forward (+)
26873491 .. 26878006
4516 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36790.t2

Sequence Viewer

Length: 1041 bp
ATGGATTACAGCGACACCGACGATTCGCTGCGCCGGCGGTCCAGGAAAATCGCTATTCTCGGCGAATCTGCTCGCAGGCAATTTGAGTCGCCAAGGGAACGTTCCTATGGATTTATGGGAGATATGGAGGAAGATATTCGGCTAGAGGCGACACGATCTAGATTGTTGAATATTTTCAAGAAGCATGGGGATTTAGCCGAGCGCATGTCTAGGGATTCTGACAAGACAATTTACGAGCGTCTACATAAGGAATTTGAAGCTGCACGGGCTTCACAAACTCAAGAGATTTATTTAGAAGGTGAGCAATGGAATGATGGACTGCTAGCCACAATCAGAGAACGGGTTCACATGGAGGTAGAAAGAAAGGCGATGGCAAGAGATGTAGGCATGTTGCACAGTCCTCATCTCCAAGAGAGAATCACTTACAGAGTTGGGGATAAGGTTATTTGTTGTTTGGAAGGCGCCAGAATTGGCATACTGTATGAGACATCTTATGCAGGAGAACCCTGTGACATATACCATTTAGTACTTGAGAGCAAGTCATTTCTAGAGAAGATGACCGTTCTTGAACACACTATTCCATTTTTTTTGCCACTAACTGAAGCAGAAAATGATCTTCTTTCCTCCAATGCTATGAAATTTATCGATTATGTTGGAGAGCTTTTGCAGGCTTATGTGGACAGAAAGGAACAGGTTCGGCTCATCAAGGAGTTATATGGGAACCAAATTAAAGAACTTCATTGTAGCATGACCTACCATTTGATTTTGTTTGCAATTTTTGATTGTGGCTGCCAGGTAATGGTAAAGCTTAAATATGCAGATCTTGTTTCAGTGCTTCCAACTAATGTCAGTGTGGTAGCATGGCCCATTCAAATCCGGAGATTCAGTCTAAATACATCAACCATGAATATACTGGAAGGTCCAACTTGTCTTCTGTATGCAGAGGATGCCTTAAGAACTATGAGCTTACCTGCAGCATATGCGGAGATTGTGCTGAATTTGCCACAAGCTCTTAGGGAAATGCACGAGGAGTCCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

347

Amino Acids

39.99

Weight (kDa)

5.5

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CENP-O PF09496 141 - 231 4.6e-15 Cenp-O kinetochore centromere component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 979
AccB1I GGYRCC 1 cut(s) 461
AccB7I CCANNNNNTGG 1 cut(s) 799
AccI GTMKAC 1 cut(s) 241
AccIII TCCGGA 1 cut(s) 876
AciI CCGC 2 cut(s) 37, 983
AclI AACGTT 1 cut(s) 100
AcsI RAATTY 3 cut(s) 251, 638, 997
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 1 cut(s) 528
AfiI CCNNNNNNNGG 1 cut(s) 799
AflII CTTAAG 1 cut(s) 952
AgsI TTSAA 5 cut(s) 169, 178, 257, 569, 872
AjnI CCWGG 2 cut(s) 41, 792
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 5 cut(s) 260, 661, 808, 966, 1010
AluI AGCT 5 cut(s) 260, 661, 808, 966, 1010
Alw26I GTCTC 1 cut(s) 479
Aor13HI TCCGGA 1 cut(s) 876
AoxI GGCC 1 cut(s) 863
ApeKI GCWGC 4 cut(s) 28, 260, 789, 974
ApoI RAATTY 3 cut(s) 251, 638, 997
ArsI GACNNNNNNTTYG 2 cut(s) 742, 774
Asp700I GAANNNNTTC 4 cut(s) 135, 173, 342, 693
AspLEI GCGC 3 cut(s) 33, 204, 464
AspS9I GGNCC 3 cut(s) 39, 864, 920
AsuHPI GGTGA 1 cut(s) 311
AsuNHI GCTAGC 1 cut(s) 322
AvaII GGWCC 2 cut(s) 39, 920
BanI GGYRCC 1 cut(s) 461
BauI CACGAG 1 cut(s) 1025
BbsI GAAGAC 1 cut(s) 923
BbvI GCAGC 4 cut(s) 15, 247, 776, 986
BccI CCATC 2 cut(s) 308, 364
BciT130I CCWGG 2 cut(s) 43, 794
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 5 cut(s) 143, 159, 210, 323, 548
BfmI CTRYAG 1 cut(s) 972
BfoI RGCGCY 1 cut(s) 465
BfrI CTTAAG 1 cut(s) 952
BfuAI ACCTGC 1 cut(s) 979
BglII AGATCT 1 cut(s) 820
BisI GCNGC 4 cut(s) 29, 261, 790, 975
BlsI GCNGC 4 cut(s) 30, 262, 791, 976
BmcAI AGTACT 1 cut(s) 528
Bme1390I CCNGG 2 cut(s) 43, 794
Bme18I GGWCC 2 cut(s) 39, 920
BmgT120I GGNCC 3 cut(s) 39, 864, 920
BmiI GGNNCC 2 cut(s) 463, 722
BmrFI CCNGG 2 cut(s) 43, 794
BmsI GCATC 1 cut(s) 937
BmtI GCTAGC 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 923
BpuEI CTTGAG 2 cut(s) 264, 551
Bsa29I ATCGAT 1 cut(s) 645
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 876
BsaXI ACNNNNNCTCC 2 cut(s) 871, 901
Bsc4I CCNNNNNNNGG 1 cut(s) 799
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 918
Bse3DI GCAATG 1 cut(s) 311
BseAI TCCGGA 1 cut(s) 876
BseBI CCWGG 2 cut(s) 43, 794
BseCI ATCGAT 1 cut(s) 645
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 952
BseLI CCNNNNNNNGG 1 cut(s) 799
BseMI GCAATG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 918
BseXI GCAGC 4 cut(s) 15, 247, 776, 986
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 1 cut(s) 865
BshNI GGYRCC 1 cut(s) 461
BshVI ATCGAT 1 cut(s) 645
BsiSI CCGG 2 cut(s) 34, 877
BslFI GGGAC 1 cut(s) 1018
BslI CCNNNNNNNGG 1 cut(s) 799
BsmAI GTCTC 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 1018
BsnI GGCC 1 cut(s) 865
Bsp13I TCCGGA 1 cut(s) 876
Bsp143I GATC 3 cut(s) 155, 613, 820
BspACI CCGC 2 cut(s) 37, 983
BspANI GGCC 1 cut(s) 865
BspDI ATCGAT 1 cut(s) 645
BspEI TCCGGA 1 cut(s) 876
BspLI GGNNCC 2 cut(s) 463, 722
BspMAI CTGCAG 1 cut(s) 976
BspMI ACCTGC 1 cut(s) 979
BspOI GCTAGC 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 461
BspTI CTTAAG 1 cut(s) 952
BsrDI GCAATG 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 33
BsrI ACTGG 1 cut(s) 918
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 3 cut(s) 155, 613, 820
BssNI GRCGYC 1 cut(s) 462
BssSI CACGAG 1 cut(s) 1025
BssT1I CCWWGG 1 cut(s) 92
Bst2BI CACGAG 1 cut(s) 1025
Bst2UI CCWGG 2 cut(s) 43, 794
Bst4CI ACNGT 3 cut(s) 398, 480, 562
BstACI GRCGYC 1 cut(s) 462
BstAFI CTTAAG 1 cut(s) 952
BstAPI GCANNNNNTGC 2 cut(s) 947, 980
BstC8I GCNNGC 5 cut(s) 35, 73, 77, 324, 669
BstDEI CTNAG 1 cut(s) 1013
BstF5I GGATG 1 cut(s) 952
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 3 cut(s) 33, 204, 464
BstKTI GATC 3 cut(s) 158, 616, 823
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 3 cut(s) 155, 613, 820
BstMWI GCNNNNNNNGC 5 cut(s) 34, 266, 947, 980, 1000
BstNI CCWGG 2 cut(s) 43, 794
BstNSI RCATGY 2 cut(s) 208, 391
BstSCI CCNGG 2 cut(s) 41, 792
BstSFI CTRYAG 1 cut(s) 972
BstV1I GCAGC 4 cut(s) 15, 247, 776, 986
BstV2I GAAGAC 1 cut(s) 923
BstX2I RGATCY 1 cut(s) 820
BstYI RGATCY 1 cut(s) 820
Bsu15I ATCGAT 1 cut(s) 645
BsuRI GGCC 1 cut(s) 865
BsuTUI ATCGAT 1 cut(s) 645
BtgZI GCGATG 1 cut(s) 383
BtsCI GGATG 1 cut(s) 952
BtsIMutI CAGTG 2 cut(s) 837, 856
BveI ACCTGC 1 cut(s) 979
Cac8I GCNNGC 5 cut(s) 35, 73, 77, 324, 669
CfoI GCGC 3 cut(s) 33, 204, 464
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 3 cut(s) 39, 864, 920
ClaI ATCGAT 1 cut(s) 645
CseI GACGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 527
CviAII CATG 7 cut(s) 185, 205, 349, 388, 748, 861, 904
CviQI GTAC 1 cut(s) 527
DdeI CTNAG 1 cut(s) 1013
DinI GGCGCC 1 cut(s) 463
DpnI GATC 3 cut(s) 157, 615, 822
DpnII GATC 3 cut(s) 155, 613, 820
Eco130I CCWWGG 1 cut(s) 92
Eco47I GGWCC 2 cut(s) 39, 920
Eco57I CTGAAG 1 cut(s) 621
EcoRII CCWGG 2 cut(s) 41, 792
EcoT14I CCWWGG 1 cut(s) 92
EgeI GGCGCC 1 cut(s) 463
EheI GGCGCC 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 7 cut(s) 188, 208, 352, 391, 751, 864, 907
FaqI GGGAC 1 cut(s) 1018
FatI CATG 7 cut(s) 184, 204, 348, 387, 747, 860, 903
FauNDI CATATG 1 cut(s) 979
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 4 cut(s) 29, 261, 790, 975
FokI GGATG 1 cut(s) 959
Fsp4HI GCNGC 4 cut(s) 29, 261, 790, 975
FspBI CTAG 5 cut(s) 143, 159, 210, 323, 548
GlaI GCGC 3 cut(s) 32, 203, 463
GluI GCNGC 4 cut(s) 29, 261, 790, 975
HaeII RGCGCY 1 cut(s) 465
HaeIII GGCC 1 cut(s) 865
HapII CCGG 2 cut(s) 34, 877
HgaI GACGC 1 cut(s) 227
HhaI GCGC 3 cut(s) 33, 204, 464
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 7 cut(s) 188, 208, 352, 391, 751, 864, 907
Hin6I GCGC 3 cut(s) 31, 202, 462
HinP1I GCGC 3 cut(s) 31, 202, 462
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 7 cut(s) 23, 65, 86, 215, 417, 882, 1031
HpaII CCGG 2 cut(s) 34, 877
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 3 cut(s) 242, 346, 679
Hpy188I TCNGA 2 cut(s) 220, 335
Hpy188III TCNNGA 6 cut(s) 159, 178, 281, 548, 566, 877
Hpy8I GTNNAC 3 cut(s) 242, 346, 679
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 290, 452, 911
HpyCH4III ACNGT 3 cut(s) 398, 480, 562
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 9 cut(s) 263, 394, 497, 667, 773, 818, 941, 974, 1024
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 266, 947, 980, 1000
HpyF3I CTNAG 1 cut(s) 1013
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 7 cut(s) 188, 208, 352, 391, 751, 864, 907
HspAI GCGC 3 cut(s) 31, 202, 462
KasI GGCGCC 1 cut(s) 461
Kpn2I TCCGGA 1 cut(s) 876
KroI GCCGGC 1 cut(s) 33
KroNI GCCGGC 1 cut(s) 35
Kzo9I GATC 3 cut(s) 155, 613, 820
Lsp1109I GCAGC 4 cut(s) 15, 247, 776, 986
LweI GCATC 1 cut(s) 937
MaeI CTAG 5 cut(s) 143, 159, 210, 323, 548
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 509
MalI GATC 3 cut(s) 157, 615, 822
MboI GATC 3 cut(s) 155, 613, 820
MboII GAAGA 4 cut(s) 143, 565, 608, 923
MflI RGATCY 1 cut(s) 820
MluCI AATT 8 cut(s) 80, 228, 251, 468, 638, 726, 774, 997
Mly113I GGCGCC 1 cut(s) 462
MlyI GAGTC 2 cut(s) 95, 1040
MmeI TCCRAC 3 cut(s) 634, 863, 947
MnlI CCTC 7 cut(s) 121, 139, 346, 411, 634, 937, 1021
MreI CGCCGGCG 1 cut(s) 33
MroI TCCGGA 1 cut(s) 876
MroNI GCCGGC 1 cut(s) 33
MroXI GAANNNNTTC 4 cut(s) 135, 173, 342, 693
MseI TTAA 3 cut(s) 729, 810, 953
MspCI CTTAAG 1 cut(s) 952
MspI CCGG 2 cut(s) 34, 877
MspR9I CCNGG 2 cut(s) 43, 794
MvaI CCWGG 2 cut(s) 43, 794
MwoI GCNNNNNNNGC 5 cut(s) 34, 266, 947, 980, 1000
NaeI GCCGGC 1 cut(s) 35
NarI GGCGCC 1 cut(s) 462
NdeI CATATG 1 cut(s) 979
NdeII GATC 3 cut(s) 155, 613, 820
NgoMIV GCCGGC 1 cut(s) 33
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 7 cut(s) 188, 208, 352, 391, 751, 864, 907
NlaIV GGNNCC 2 cut(s) 463, 722
NmeAIII GCCGAG 2 cut(s) 39, 223
NmuCI GTSAC 1 cut(s) 509
NspI RCATGY 2 cut(s) 208, 391
PdiI GCCGGC 1 cut(s) 35
PdmI GAANNNNTTC 4 cut(s) 135, 173, 342, 693
PfeI GAWTC 5 cut(s) 23, 65, 215, 417, 882
PflMI CCANNNNNTGG 1 cut(s) 799
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 4 cut(s) 30, 262, 791, 976
PleI GAGTC 2 cut(s) 94, 1039
PluTI GGCGCC 1 cut(s) 465
PpsI GAGTC 2 cut(s) 94, 1039
Psp1406I AACGTT 1 cut(s) 100
Psp6I CCWGG 2 cut(s) 41, 792
PspGI CCWGG 2 cut(s) 41, 792
PspN4I GGNNCC 2 cut(s) 463, 722
PspPI GGNCC 3 cut(s) 39, 864, 920
PstI CTGCAG 1 cut(s) 976
PsuI RGATCY 1 cut(s) 820
RsaI GTAC 1 cut(s) 528
RsaNI GTAC 1 cut(s) 527
SaqAI TTAA 3 cut(s) 729, 810, 953
SatI GCNGC 4 cut(s) 29, 261, 790, 975
Sau3AI GATC 3 cut(s) 155, 613, 820
Sau96I GGNCC 3 cut(s) 39, 864, 920
ScaI AGTACT 1 cut(s) 528
SchI GAGTC 2 cut(s) 95, 1040
ScrFI CCNGG 2 cut(s) 43, 794
SfaNI GCATC 1 cut(s) 937
SfcI CTRYAG 1 cut(s) 972
SfoI GGCGCC 1 cut(s) 463
SgrAI CRCCGGYG 1 cut(s) 33
SinI GGWCC 2 cut(s) 39, 920
SmlI CTYRAG 3 cut(s) 279, 530, 952
SmoI CTYRAG 3 cut(s) 279, 530, 952
Sse9I AATT 8 cut(s) 80, 228, 251, 468, 638, 726, 774, 997
SsiI CCGC 2 cut(s) 37, 983
SspDI GGCGCC 1 cut(s) 461
SspI AATATT 1 cut(s) 172
SspMI CTAG 5 cut(s) 143, 159, 210, 323, 548
StyD4I CCNGG 2 cut(s) 41, 792
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 3 cut(s) 398, 480, 562
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 645
TasI AATT 8 cut(s) 80, 228, 251, 468, 638, 726, 774, 997
TatI WGTACW 1 cut(s) 526
TfiI GAWTC 5 cut(s) 23, 65, 215, 417, 882
Tru1I TTAA 3 cut(s) 729, 810, 953
Tru9I TTAA 3 cut(s) 729, 810, 953
TscAI CASTG 2 cut(s) 837, 856
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 4 cut(s) 28, 260, 789, 974
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 3 cut(s) 650, 728, 920
TspRI CASTG 2 cut(s) 837, 856
Van91I CCANNNNNTGG 1 cut(s) 799
Vha464I CTTAAG 1 cut(s) 952
VpaK11BI GGWCC 2 cut(s) 39, 920
XapI RAATTY 3 cut(s) 251, 638, 997
XbaI TCTAGA 2 cut(s) 158, 547
XceI RCATGY 2 cut(s) 208, 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 910
XmiI GTMKAC 1 cut(s) 241
XmnI GAANNNNTTC 4 cut(s) 135, 173, 342, 693
XspI CTAG 5 cut(s) 143, 159, 210, 323, 548
ZrmI AGTACT 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.