Rw6G038990

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0008371
Physical Location & Seq
Reverse (-)
63057980 .. 63063742
5763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G038990.1

Sequence Viewer

Length: 744 bp
ATGGATTACAGCGACACAGACGATTCGCTGCGCCGGAGGTCCAGGAAAATCGCTTATCTCGGCGAATCCGCTCGCAGGCAATTTGAATCGCCAAGTGGACGTTCCTATGGATTAATGGGAGAATTGAACTATATGCAGGAGGAAGACATTCGGCTAGAGGCGACACGATCTAGATTTTCGAATGCTTTGAAGAGGCATGGTGATTTAGCCGAGCGTATGTCTAGGGATTCTGACAAAACAATTTACGAGCGTCTACATAAGGAATTTGAAGCTGCACGGGCTTTGCAAACTCAAGAGGTTTATTTAGATGGCGAACAATGGAATGATGGACTGCTAGCCACAATAAGAGAACGGGTTCACATGGAGGTAGACAGAAAGGCGATGGCGAGAGATGTAAGCACGTTGCACAGTCCTCATTTCCAAGAGAGAATCACTTACAAAGTTGGGGATAAGGTGATATGTTGTTTGGAAGGAGCAAGAATTGGCATACTGTATGAGACATCTTATGCGGGAGAACCTTGTGATATATACCATTTAGTACTTGAGAGCAAGTCATTTCTAGAGAAGATGACCGTCCTTGAACACACCATTCCATTTTTTTTGCCACTAAGAGAAGCGGAAAATGATCTTCTTTCCTCCAATGCTATGAAATTTATAGATCATGTTGGAGAGCTTTTGCAGGCTTATGTGGACAGAAAGGAACAGGTACTTTACTGGCATAGCTCAACATTAAAGGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

247

Amino Acids

28.75

Weight (kDa)

5.77

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CENP-O PF09496 145 - 236 2.9e-16 Cenp-O kinetochore centromere component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 71
AccI GTMKAC 2 cut(s) 253, 369
AciI CCGC 3 cut(s) 69, 509, 617
AcsI RAATTY 2 cut(s) 263, 650
AfaI GTAC 2 cut(s) 540, 708
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 5 cut(s) 86, 127, 190, 269, 581
AjnI CCWGG 1 cut(s) 41
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 3 cut(s) 272, 673, 723
AluI AGCT 3 cut(s) 272, 673, 723
Alw26I GTCTC 1 cut(s) 491
ApeKI GCWGC 2 cut(s) 28, 272
ApoI RAATTY 2 cut(s) 263, 650
AseI ATTAAT 1 cut(s) 113
Asp700I GAANNNNTTC 2 cut(s) 147, 354
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 212, 466
AsuII TTCGAA 1 cut(s) 179
AsuNHI GCTAGC 1 cut(s) 334
AvaII GGWCC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 15, 259
BccI CCATC 3 cut(s) 302, 320, 376
BciT130I CCWGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 5 cut(s) 155, 171, 222, 335, 560
BisI GCNGC 2 cut(s) 29, 273
BlsI GCNGC 2 cut(s) 30, 274
BmcAI AGTACT 1 cut(s) 540
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 43
BmtI GCTAGC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 179
BpuEI CTTGAG 2 cut(s) 276, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 719
BseBI CCWGG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 719
BseXI GCAGC 2 cut(s) 15, 259
BsgI GTGCAG 1 cut(s) 258
BsiSI CCGG 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 491
BsmI GAATGC 1 cut(s) 187
Bsp119I TTCGAA 1 cut(s) 179
Bsp143I GATC 3 cut(s) 167, 625, 658
BspACI CCGC 3 cut(s) 69, 509, 617
BspOI GCTAGC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 719
BssMI GATC 3 cut(s) 167, 625, 658
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 3 cut(s) 410, 492, 574
Bst6I CTCTTC 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 179
BstC8I GCNNGC 4 cut(s) 73, 77, 336, 681
BstDEI CTNAG 1 cut(s) 608
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 3 cut(s) 170, 628, 661
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 3 cut(s) 167, 625, 658
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 15, 259
BstV2I GAAGAC 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 395
Cac8I GCNNGC 4 cut(s) 73, 77, 336, 681
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 39
CseI GACGC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 539, 707
CviAII CATG 3 cut(s) 197, 361, 662
CviJI RGCY 8 cut(s) 154, 209, 272, 281, 338, 673, 683, 723
CviKI_1 RGCY 8 cut(s) 154, 209, 272, 281, 338, 673, 683, 723
CviQI GTAC 2 cut(s) 539, 707
DdeI CTNAG 1 cut(s) 608
DpnI GATC 3 cut(s) 169, 627, 660
DpnII GATC 3 cut(s) 167, 625, 658
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 41
FaeI CATG 3 cut(s) 200, 364, 665
FatI CATG 3 cut(s) 196, 360, 661
FauI CCCGC 1 cut(s) 502
FblI GTMKAC 2 cut(s) 253, 369
Fnu4HI GCNGC 2 cut(s) 29, 273
Fsp4HI GCNGC 2 cut(s) 29, 273
FspBI CTAG 5 cut(s) 155, 171, 222, 335, 560
GlaI GCGC 1 cut(s) 32
GluI GCNGC 2 cut(s) 29, 273
HapII CCGG 1 cut(s) 34
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 33
Hin1II CATG 3 cut(s) 200, 364, 665
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 5 cut(s) 23, 65, 86, 227, 429
HpaII CCGG 1 cut(s) 34
HphI GGTGA 2 cut(s) 212, 466
Hpy166II GTNNAC 5 cut(s) 98, 254, 358, 370, 691
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 3 cut(s) 171, 293, 560
Hpy8I GTNNAC 5 cut(s) 98, 254, 358, 370, 691
HpyAV CCTTC 1 cut(s) 464
HpyCH4III ACNGT 3 cut(s) 410, 492, 574
HpyCH4IV ACGT 2 cut(s) 100, 401
HpyCH4V TGCA 5 cut(s) 136, 275, 286, 406, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 608
HpySE526I ACGT 2 cut(s) 100, 401
Hsp92II CATG 3 cut(s) 200, 364, 665
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 3 cut(s) 167, 625, 658
LmnI GCTCC 1 cut(s) 473
LpnPI CCDG 8 cut(s) 28, 47, 55, 61, 122, 665, 689, 700
Lsp1109I GCAGC 2 cut(s) 15, 259
MaeI CTAG 5 cut(s) 155, 171, 222, 335, 560
MaeII ACGT 2 cut(s) 100, 401
MalI GATC 3 cut(s) 169, 627, 660
MbiI CCGCTC 1 cut(s) 71
MboI GATC 3 cut(s) 167, 625, 658
MboII GAAGA 4 cut(s) 155, 202, 577, 620
MluCI AATT 7 cut(s) 80, 122, 240, 263, 480, 650, 739
MmeI TCCRAC 1 cut(s) 646
MnlI CCTC 8 cut(s) 30, 133, 151, 186, 289, 358, 423, 646
MroXI GAANNNNTTC 2 cut(s) 147, 354
MseI TTAA 2 cut(s) 113, 731
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 3 cut(s) 167, 625, 658
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 3 cut(s) 200, 364, 665
NmeAIII GCCGAG 2 cut(s) 39, 235
NspV TTCGAA 1 cut(s) 179
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 2 cut(s) 147, 354
PfeI GAWTC 5 cut(s) 23, 65, 86, 227, 429
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 2 cut(s) 30, 274
PshBI ATTAAT 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspPI GGNCC 1 cut(s) 39
RsaI GTAC 2 cut(s) 540, 708
RsaNI GTAC 2 cut(s) 539, 707
SaqAI TTAA 2 cut(s) 113, 731
SatI GCNGC 2 cut(s) 29, 273
Sau3AI GATC 3 cut(s) 167, 625, 658
Sau96I GGNCC 1 cut(s) 39
ScaI AGTACT 1 cut(s) 540
ScrFI CCNGG 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 179
SinI GGWCC 1 cut(s) 39
SmlI CTYRAG 2 cut(s) 291, 542
SmoI CTYRAG 2 cut(s) 291, 542
Sse9I AATT 7 cut(s) 80, 122, 240, 263, 480, 650, 739
SsiI CCGC 3 cut(s) 69, 509, 617
SspMI CTAG 5 cut(s) 155, 171, 222, 335, 560
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 3 cut(s) 410, 492, 574
TaiI ACGT 2 cut(s) 103, 404
TaqI TCGA 1 cut(s) 179
TasI AATT 7 cut(s) 80, 122, 240, 263, 480, 650, 739
TatI WGTACW 1 cut(s) 538
TfiI GAWTC 5 cut(s) 23, 65, 86, 227, 429
Tru1I TTAA 2 cut(s) 113, 731
Tru9I TTAA 2 cut(s) 113, 731
TseI GCWGC 2 cut(s) 28, 272
TspDTI ATGAA 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 39
VspI ATTAAT 1 cut(s) 113
XapI RAATTY 2 cut(s) 263, 650
XbaI TCTAGA 2 cut(s) 170, 559
XmiI GTMKAC 2 cut(s) 253, 369
XmnI GAANNNNTTC 2 cut(s) 147, 354
XspI CTAG 5 cut(s) 155, 171, 222, 335, 560
ZrmI AGTACT 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.