Rh6BG453300

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008371
Physical Location & Seq
Forward (+)
66681898 .. 66687350
5453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG453300.1

Sequence Viewer

Length: 795 bp
ATGGATTACAGCGACACAGACGATTCGCTGCGCCGGAGGTCCAGGAAAATCGCTTATCTCGGCGAATCCGCTCGCAGGCAATTTGAATCGCCAACTGGACGTTCCTATGGATTAATGGGAGAATTGAACTATATGCAGGAGGAAGATATTCGGCTAGAGGCGACACGATCTAGATTGTCGAATGCTTTGAAGAGGCATGGTGATTTAGCCGAGCGTATGTCTAGCAGGGATTCTGACAAGACAATTTACGAGCGTCTACATAAGGAATTTGAAGCTGCACGGGCTTTGCAAACTCAAGAGATTTATTTAGATGGCGAACAATGGAATGATGGACTGCTAGCCACAATAAGAGAACGGGTTCACATGGAGGTAGACAGAAAGGCGATGGCGAGAGATGTAAGCACGTTGCACAGTCCTCATTTCCAAGAGAGAATCACTTACAAAGTTGGGGATAAGGTAATATGTTGTTTGGAAGGAGCAAGAATTGGCATACTGTATGAGACATCTTATGCGGGAGAACCTTGTGATATATACCATTTAGTACTTGAGAGCAAGTCATTTCTAGAGAAGATGACTGTCCTTGAACACACCATTCCATTTTTTTTGCCACTAAGAGAAGCAGAAAATGATCTTCTTTCCTCCAATGCTATGAAATTTATAGATCATGTTGGAGAGCTTTTGCAGGCTTATGTGGACAGAAAGGAACAGGTACTTTACTGGCATAGCTCAACATTAAAAGGGAATCGAGTGACTTTAGAATCCAAGATGTGTGCATATAGAGAAGGCAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

264

Amino Acids

30.7

Weight (kDa)

6.03

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CENP-O PF09496 146 - 237 2.5e-16 Cenp-O kinetochore centromere component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 793
AccBSI CCGCTC 1 cut(s) 71
AccI GTMKAC 2 cut(s) 256, 372
AciI CCGC 2 cut(s) 69, 512
AcsI RAATTY 2 cut(s) 266, 653
AfaI GTAC 2 cut(s) 543, 711
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 5 cut(s) 86, 127, 190, 272, 584
AjnI CCWGG 1 cut(s) 41
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 3 cut(s) 275, 676, 726
AluI AGCT 3 cut(s) 275, 676, 726
Alw26I GTCTC 1 cut(s) 494
ApeKI GCWGC 2 cut(s) 28, 275
ApoI RAATTY 2 cut(s) 266, 653
AseI ATTAAT 1 cut(s) 113
Asp700I GAANNNNTTC 2 cut(s) 147, 357
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 212
AsuNHI GCTAGC 1 cut(s) 337
AvaII GGWCC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 15, 262
BccI CCATC 3 cut(s) 305, 323, 379
BciT130I CCWGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 5 cut(s) 155, 171, 222, 338, 563
BisI GCNGC 2 cut(s) 29, 276
BlsI GCNGC 2 cut(s) 30, 277
BmcAI AGTACT 1 cut(s) 543
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 43
BmtI GCTAGC 1 cut(s) 341
BpuEI CTTGAG 2 cut(s) 279, 566
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 100, 722
BseBI CCWGG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 100, 722
BseXI GCAGC 2 cut(s) 15, 262
BsgI GTGCAG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 494
BsmI GAATGC 1 cut(s) 187
Bsp143I GATC 3 cut(s) 167, 628, 661
BspACI CCGC 2 cut(s) 69, 512
BspOI GCTAGC 1 cut(s) 341
BsrBI CCGCTC 1 cut(s) 71
BsrI ACTGG 2 cut(s) 100, 722
BssMI GATC 3 cut(s) 167, 628, 661
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 3 cut(s) 413, 495, 577
Bst6I CTCTTC 1 cut(s) 185
BstC8I GCNNGC 4 cut(s) 73, 77, 339, 684
BstDEI CTNAG 1 cut(s) 611
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 3 cut(s) 170, 631, 664
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 3 cut(s) 167, 628, 661
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 15, 262
BtgZI GCGATG 1 cut(s) 398
Cac8I GCNNGC 4 cut(s) 73, 77, 339, 684
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 39
CseI GACGC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 542, 710
CviAII CATG 3 cut(s) 197, 364, 665
CviJI RGCY 8 cut(s) 154, 209, 275, 284, 341, 676, 686, 726
CviKI_1 RGCY 8 cut(s) 154, 209, 275, 284, 341, 676, 686, 726
CviQI GTAC 2 cut(s) 542, 710
DdeI CTNAG 1 cut(s) 611
DpnI GATC 3 cut(s) 169, 630, 663
DpnII GATC 3 cut(s) 167, 628, 661
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 41
FaeI CATG 3 cut(s) 200, 367, 668
FatI CATG 3 cut(s) 196, 363, 664
FauI CCCGC 1 cut(s) 505
FblI GTMKAC 2 cut(s) 256, 372
Fnu4HI GCNGC 2 cut(s) 29, 276
Fsp4HI GCNGC 2 cut(s) 29, 276
FspBI CTAG 5 cut(s) 155, 171, 222, 338, 563
GlaI GCGC 1 cut(s) 32
GluI GCNGC 2 cut(s) 29, 276
HapII CCGG 1 cut(s) 34
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 33
Hin1II CATG 3 cut(s) 200, 367, 668
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 7 cut(s) 23, 65, 86, 230, 432, 742, 758
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 4 cut(s) 257, 361, 373, 694
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 3 cut(s) 171, 296, 563
Hpy8I GTNNAC 4 cut(s) 257, 361, 373, 694
HpyAV CCTTC 2 cut(s) 467, 776
HpyCH4III ACNGT 3 cut(s) 413, 495, 577
HpyCH4IV ACGT 2 cut(s) 100, 404
HpyCH4V TGCA 6 cut(s) 136, 278, 289, 409, 682, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 2 cut(s) 100, 404
Hsp92II CATG 3 cut(s) 200, 367, 668
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 3 cut(s) 167, 628, 661
LmnI GCTCC 1 cut(s) 476
Lsp1109I GCAGC 2 cut(s) 15, 262
MaeI CTAG 5 cut(s) 155, 171, 222, 338, 563
MaeII ACGT 2 cut(s) 100, 404
MaeIII GTNAC 1 cut(s) 748
MalI GATC 3 cut(s) 169, 630, 663
MbiI CCGCTC 1 cut(s) 71
MboI GATC 3 cut(s) 167, 628, 661
MboII GAAGA 4 cut(s) 155, 202, 580, 623
MluCI AATT 7 cut(s) 80, 122, 243, 266, 483, 653, 788
MmeI TCCRAC 1 cut(s) 649
MnlI CCTC 7 cut(s) 30, 133, 151, 186, 361, 426, 649
MroXI GAANNNNTTC 2 cut(s) 147, 357
MseI TTAA 2 cut(s) 113, 734
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 3 cut(s) 167, 628, 661
NheI GCTAGC 1 cut(s) 337
NlaIII CATG 3 cut(s) 200, 367, 668
NmeAIII GCCGAG 2 cut(s) 39, 235
NmuCI GTSAC 1 cut(s) 748
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 2 cut(s) 147, 357
PfeI GAWTC 7 cut(s) 23, 65, 86, 230, 432, 742, 758
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 2 cut(s) 30, 277
PshBI ATTAAT 1 cut(s) 113
PsiI TTATAA 1 cut(s) 793
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspPI GGNCC 1 cut(s) 39
RsaI GTAC 2 cut(s) 543, 711
RsaNI GTAC 2 cut(s) 542, 710
SaqAI TTAA 2 cut(s) 113, 734
SatI GCNGC 2 cut(s) 29, 276
Sau3AI GATC 3 cut(s) 167, 628, 661
Sau96I GGNCC 1 cut(s) 39
ScaI AGTACT 1 cut(s) 543
ScrFI CCNGG 1 cut(s) 43
SinI GGWCC 1 cut(s) 39
SmlI CTYRAG 2 cut(s) 294, 545
SmoI CTYRAG 2 cut(s) 294, 545
Sse9I AATT 7 cut(s) 80, 122, 243, 266, 483, 653, 788
SsiI CCGC 2 cut(s) 69, 512
SspMI CTAG 5 cut(s) 155, 171, 222, 338, 563
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 3 cut(s) 413, 495, 577
TaiI ACGT 2 cut(s) 103, 407
TaqI TCGA 2 cut(s) 179, 745
TasI AATT 7 cut(s) 80, 122, 243, 266, 483, 653, 788
TatI WGTACW 1 cut(s) 541
TfiI GAWTC 7 cut(s) 23, 65, 86, 230, 432, 742, 758
Tru1I TTAA 2 cut(s) 113, 734
Tru9I TTAA 2 cut(s) 113, 734
TseFI GTSAC 1 cut(s) 748
TseI GCWGC 2 cut(s) 28, 275
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 39
VspI ATTAAT 1 cut(s) 113
XapI RAATTY 2 cut(s) 266, 653
XbaI TCTAGA 2 cut(s) 170, 562
XmiI GTMKAC 2 cut(s) 256, 372
XmnI GAANNNNTTC 2 cut(s) 147, 357
XspI CTAG 5 cut(s) 155, 171, 222, 338, 563
ZrmI AGTACT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.