Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004222.1

Orthogroup ID

OG0008371

Physical Location & Seq

Genomic Coordinates Reverse (-)

13636 .. 18390

Gene Structure 4755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004222.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggattacagcgacacagacgattcgctgcgccggaggtccaggaaaatcgcttatctcggcgaatccgctcgcaggcaatttgaatcgccaagtggacgttcctatggattaatgggagaattgaactatatgcaggaggaagacattcggctagaggcgacacgatctagattttcgaatgctttgaagaggcatggtgatttagccgagcgtatgtctagggattctgacaaaacaatttacgagcgtctacataaggaatttgaagctgcacgggctttgcaaactcaagaggtttatttagatggcgaacaatggaatgatggactgctagccacaataagagaacgggttcacatggaggtagacagaaaggcgatggcgagagatgtaagcacgttgcacagtcctcatttccaagagagaatcacttacaaagttggggataaggtgatatgttgtttggaaggagcaagaattggcatactgtatgagacatcttatgcggatcttgtttccgtacttccaactaatgtcagtgtggtagcatggcccattcaaatccggagattcagtctaaatacatcaaccatgaatacactggaaggtccaacttgtctcctctatgcagaggatgccttgcgaactatgagcttacctgaagcatatgcagagattgtcttgaatttgccacatgctcttcgggaaatgcacgaggagtccccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CENP-O

Protein Analysis

243

Amino Acids

27.98

Weight (kDa)

5.59

Isoelectric Point (pI)

59.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10710 AT5G10710 AT5G10710
fragaria_vesca	FvH4_2g36790 FvH4_2g36790 FvH4_2g36790 FvH4_2g36790
malus_domestica	MD08G1128700.v1.1 MD15G1108100.v1.1
prunus_persica	Prupe.1G460400_v2.0.a1
pyrus_communis	pycom08g10900 pycom15g09880
rosa_chinensis	RchiOBHm_Chr6g0304951
rosa_laevigata	RLG00000010933
rosa_multiflora	Rmu_sc0000301.1_g000001 Rmu_sc0004222.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163320
rosa_rugosa	Rorug06G0336400
rosa_samantha	Rh6AG447700 Rh6BG453300 Rh6CG461300 Rh6DG448300
rosa_wichuraiana	Rw6G038990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	71
AccI	GTMKAC	2 cut(s)	253, 369
AccIII	TCCGGA	1 cut(s)	567
AciI	CCGC	2 cut(s)	69, 509
AclWI	GGATC	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	263, 688
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	6 cut(s)	86, 127, 190, 269, 563, 688
AjnI	CCWGG	1 cut(s)	41
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AluBI	AGCT	2 cut(s)	272, 657
AluI	AGCT	2 cut(s)	272, 657
Alw26I	GTCTC	2 cut(s)	491, 626
AlwI	GGATC	1 cut(s)	519
Aor13HI	TCCGGA	1 cut(s)	567
AoxI	GGCC	1 cut(s)	554
ApeKI	GCWGC	2 cut(s)	28, 272
ApoI	RAATTY	2 cut(s)	263, 688
AseI	ATTAAT	1 cut(s)	113
Asp700I	GAANNNNTTC	2 cut(s)	147, 354
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	3 cut(s)	39, 555, 611
AsuHPI	GGTGA	2 cut(s)	212, 466
AsuII	TTCGAA	1 cut(s)	179
AsuNHI	GCTAGC	1 cut(s)	334
AvaII	GGWCC	2 cut(s)	39, 611
BauI	CACGAG	1 cut(s)	716
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	15, 259
BccI	CCATC	3 cut(s)	302, 320, 376
BciT130I	CCWGG	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	491, 626
BfaI	CTAG	4 cut(s)	155, 171, 222, 335
BisI	GCNGC	2 cut(s)	29, 273
BlsI	GCNGC	2 cut(s)	30, 274
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	2 cut(s)	39, 611
BmgT120I	GGNCC	3 cut(s)	39, 555, 611
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	628
BmtI	GCTAGC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	609
BseAI	TCCGGA	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	643
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	609
BseRI	GAGGAG	1 cut(s)	614
BseXI	GCAGC	2 cut(s)	15, 259
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	34, 568
BslFI	GGGAC	1 cut(s)	709
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	491, 626
BsmFI	GGGAC	1 cut(s)	709
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	556
Bsp119I	TTCGAA	1 cut(s)	179
Bsp13I	TCCGGA	1 cut(s)	567
Bsp143I	GATC	2 cut(s)	167, 511
BspACI	CCGC	2 cut(s)	69, 509
BspANI	GGCC	1 cut(s)	556
BspEI	TCCGGA	1 cut(s)	567
BspOI	GCTAGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	519
BspQI	GCTCTTC	1 cut(s)	708
BspT104I	TTCGAA	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	609
BssMI	GATC	2 cut(s)	167, 511
BssSI	CACGAG	1 cut(s)	716
Bst2BI	CACGAG	1 cut(s)	716
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	410, 492
Bst6I	CTCTTC	2 cut(s)	185, 708
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstBI	TTCGAA	1 cut(s)	179
BstC8I	GCNNGC	3 cut(s)	73, 77, 336
BstF5I	GGATG	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	2 cut(s)	170, 514
BstMAI	GTCTC	2 cut(s)	491, 626
BstMBI	GATC	2 cut(s)	167, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 638
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	15, 259
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	556
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	643
BtsIMutI	CAGTG	2 cut(s)	547, 602
Cac8I	GCNNGC	3 cut(s)	73, 77, 336
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	3 cut(s)	39, 555, 611
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	5 cut(s)	197, 361, 552, 595, 698
CviJI	RGCY	7 cut(s)	154, 209, 272, 281, 338, 556, 657
CviKI_1	RGCY	7 cut(s)	154, 209, 272, 281, 338, 556, 657
CviQI	GTAC	1 cut(s)	524
DpnI	GATC	2 cut(s)	169, 513
DpnII	GATC	2 cut(s)	167, 511
Eam1104I	CTCTTC	2 cut(s)	185, 708
EarI	CTCTTC	2 cut(s)	185, 708
Eco47I	GGWCC	2 cut(s)	39, 611
Eco57I	CTGAAG	1 cut(s)	684
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	5 cut(s)	200, 364, 555, 598, 701
FaqI	GGGAC	1 cut(s)	709
FatI	CATG	5 cut(s)	196, 360, 551, 594, 697
FauNDI	CATATG	1 cut(s)	670
FblI	GTMKAC	2 cut(s)	253, 369
Fnu4HI	GCNGC	2 cut(s)	29, 273
FokI	GGATG	1 cut(s)	650
Fsp4HI	GCNGC	2 cut(s)	29, 273
FspBI	CTAG	4 cut(s)	155, 171, 222, 335
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	29, 273
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	2 cut(s)	34, 568
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	5 cut(s)	200, 364, 555, 598, 701
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	7 cut(s)	23, 65, 86, 227, 429, 573, 722
HpaII	CCGG	2 cut(s)	34, 568
HphI	GGTGA	2 cut(s)	212, 466
Hpy166II	GTNNAC	4 cut(s)	98, 254, 358, 370
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	5 cut(s)	171, 293, 568, 685, 707
Hpy8I	GTNNAC	4 cut(s)	98, 254, 358, 370
HpyAV	CCTTC	2 cut(s)	464, 602
HpyCH4III	ACNGT	2 cut(s)	410, 492
HpyCH4IV	ACGT	2 cut(s)	100, 401
HpyCH4V	TGCA	7 cut(s)	136, 275, 286, 406, 632, 674, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 638
HpySE526I	ACGT	2 cut(s)	100, 401
Hsp92II	CATG	5 cut(s)	200, 364, 555, 598, 701
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	167, 511
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	1 cut(s)	473
LpnPI	CCDG	8 cut(s)	28, 47, 55, 61, 122, 581, 590, 675
Lsp1109I	GCAGC	2 cut(s)	15, 259
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	4 cut(s)	155, 171, 222, 335
MaeII	ACGT	2 cut(s)	100, 401
MalI	GATC	2 cut(s)	169, 513
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	2 cut(s)	167, 511
MboII	GAAGA	3 cut(s)	155, 202, 695
MflI	RGATCY	1 cut(s)	511
MluCI	AATT	6 cut(s)	80, 122, 240, 263, 480, 688
MlyI	GAGTC	1 cut(s)	731
MmeI	TCCRAC	2 cut(s)	554, 638
MroI	TCCGGA	1 cut(s)	567
MroXI	GAANNNNTTC	2 cut(s)	147, 354
MseI	TTAA	2 cut(s)	113, 730
MspI	CCGG	2 cut(s)	34, 568
MspR9I	CCNGG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	278, 638
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	2 cut(s)	167, 511
NheI	GCTAGC	1 cut(s)	334
NlaIII	CATG	5 cut(s)	200, 364, 555, 598, 701
NmeAIII	GCCGAG	2 cut(s)	39, 235
NspI	RCATGY	1 cut(s)	701
NspV	TTCGAA	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	708
PctI	GAATGC	1 cut(s)	187
PdmI	GAANNNNTTC	2 cut(s)	147, 354
PfeI	GAWTC	6 cut(s)	23, 65, 86, 227, 429, 573
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	30, 274
PleI	GAGTC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	730
PshBI	ATTAAT	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspPI	GGNCC	3 cut(s)	39, 555, 611
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	2 cut(s)	113, 730
SatI	GCNGC	2 cut(s)	29, 273
Sau3AI	GATC	2 cut(s)	167, 511
Sau96I	GGNCC	3 cut(s)	39, 555, 611
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	1 cut(s)	43
SfaNI	GCATC	1 cut(s)	628
SfuI	TTCGAA	1 cut(s)	179
SinI	GGWCC	2 cut(s)	39, 611
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	6 cut(s)	80, 122, 240, 263, 480, 688
SsiI	CCGC	2 cut(s)	69, 509
SspMI	CTAG	4 cut(s)	155, 171, 222, 335
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	410, 492
TaiI	ACGT	2 cut(s)	103, 404
TaqI	TCGA	1 cut(s)	179
TasI	AATT	6 cut(s)	80, 122, 240, 263, 480, 688
TfiI	GAWTC	6 cut(s)	23, 65, 86, 227, 429, 573
Tru1I	TTAA	2 cut(s)	113, 730
Tru9I	TTAA	2 cut(s)	113, 730
TscAI	CASTG	2 cut(s)	547, 609
TseI	GCWGC	2 cut(s)	28, 272
TspDTI	ATGAA	1 cut(s)	611
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	2 cut(s)	547, 609
VpaK11BI	GGWCC	2 cut(s)	39, 611
VspI	ATTAAT	1 cut(s)	113
XapI	RAATTY	2 cut(s)	263, 688
XbaI	TCTAGA	1 cut(s)	170
XceI	RCATGY	1 cut(s)	701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XmiI	GTMKAC	2 cut(s)	253, 369
XmnI	GAANNNNTTC	2 cut(s)	147, 354
XspI	CTAG	4 cut(s)	155, 171, 222, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.