Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008371

Physical Location & Seq

Genomic Coordinates Forward (+)

38505743 .. 38512639

Gene Structure 6897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G460400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGATTACAGCGACACAGAAGAGCCGTACAGGAGGAGACCGAGGAAAATGGCTTATCTTGGAGACTCCTCTCGCAGGCAATTTGAATCTCTAAGCGGACGTCCCTATGCCCTAATGGGAGACATGAGTTTTCTGCAAGAGGAAGACATTTCGTTAGACGCGACACGGGCTAGATGGACAAATGTTCTCAAACGGCATAGTGACTTAGCAGAGCGTCTTTCTAGGGATGCTGACAAGACAATTTATGAGCGTCTACAAAAAGAATTTGAAGCTGCACGGGCTTTACAAACTCAAGAGATTAATTTGGATGGTGAACAATGGAATGATGGACTACTAGCTACAATAAGAGAGCGGGTTCACATGGAGGTTGACAGAAAGGCAATGGCGGGAGACGTAAACATGTTGCCTGGTCCTCAAATCCAAGAAAAAATTACTTATAAAGTCGGAAATAAGGTGATTTGTTGTTTGGAAGGGGCTAGAATTGGCATTCTGTATGAGACATCTTATGCAGGAGAACCTTGTGACCTGTACCATTGTGTGCTTGAGAGCAAGTCATTTCTTGAGAAGATGACTGTCCTTGAACACACCATTCCATATTTTTTGCCATTACGAGAAGCAGAAAATGATCTTCTTTCTTCTAATGCTATGAAATTTATAGATTACATTGGAGAGCTTTTGCAGTCTTACGTGGATAGAAGGGAACAGGTTCGGCTTGCCAAGGAGTTATATGGGAACCAGATTAAAGAAATTTATTATACCCTTCCCTACAACTTAATTGCCTTTTCACTGGTTGATTTTGATTGCAAGGTAATAGTTAAGCTTAAATATGCGGAGCTTGTTTCCGTACTTCCAACTCATGTCAGTGTGGTAGCATGGCCAGTGCATCAATACAGGAAAACAAGTCTAAATGCATCAACCATGAACAAAAAGGAAAACGGATCCTTGGAAGGTCCAACTACCCTCTCCTATGCAGAGGATGCCTTGCAAAATATGAGCTTACCTGAAGCATATGCAGAGATTGTGTTGAATTTGCCACAAGCTCTTCGGGATATATGTGAGGGGTCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CENP-O

Protein Analysis

357

Amino Acids

40.84

Weight (kDa)

5.24

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10710 AT5G10710 AT5G10710
fragaria_vesca	FvH4_2g36790 FvH4_2g36790 FvH4_2g36790 FvH4_2g36790
malus_domestica	MD08G1128700.v1.1 MD15G1108100.v1.1
prunus_persica	Prupe.1G460400_v2.0.a1
pyrus_communis	pycom08g10900 pycom15g09880
rosa_chinensis	RchiOBHm_Chr6g0304951
rosa_laevigata	RLG00000010933
rosa_multiflora	Rmu_sc0000301.1_g000001 Rmu_sc0004222.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163320
rosa_rugosa	Rorug06G0336400
rosa_samantha	Rh6AG447700 Rh6BG453300 Rh6CG461300 Rh6DG448300
rosa_wichuraiana	Rw6G038990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AatII	GACGTC	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	253
AccII	CGCG	1 cut(s)	161
AciI	CCGC	4 cut(s)	96, 352, 386, 830
AclWI	GGATC	2 cut(s)	933, 946
AcoI	YGGCCR	1 cut(s)	875
AcsI	RAATTY	4 cut(s)	263, 650, 747, 1027
AcuI	CTGAAG	1 cut(s)	1023
AcyI	GRCGYC	1 cut(s)	100
AfaI	GTAC	3 cut(s)	29, 530, 846
AfiI	CCNNNNNNNGG	1 cut(s)	75
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	4 cut(s)	86, 269, 581, 1027
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	7 cut(s)	272, 338, 673, 820, 835, 996, 1040
AluI	AGCT	7 cut(s)	272, 338, 673, 820, 835, 996, 1040
Alw26I	GTCTC	5 cut(s)	31, 57, 114, 384, 491
AlwI	GGATC	2 cut(s)	933, 946
AoxI	GGCC	1 cut(s)	875
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	4 cut(s)	263, 650, 747, 1027
AseI	ATTAAT	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	705
AspS9I	GGNCC	3 cut(s)	410, 950, 1062
AsuHPI	GGTGA	2 cut(s)	323, 466
AvaII	GGWCC	3 cut(s)	410, 950, 1062
BalI	TGGCCA	1 cut(s)	877
BamHI	GGATCC	1 cut(s)	938
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	3 cut(s)	168, 302, 320
BceAI	ACGGC	2 cut(s)	10, 209
BciT130I	CCWGG	1 cut(s)	408
BcoDI	GTCTC	5 cut(s)	31, 57, 114, 384, 491
BfaI	CTAG	4 cut(s)	171, 222, 335, 477
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	408
Bme18I	GGWCC	3 cut(s)	410, 950, 1062
BmgT120I	GGNCC	3 cut(s)	410, 950, 1062
BmiI	GGNNCC	3 cut(s)	734, 940, 1063
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	4 cut(s)	217, 892, 920, 967
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	1 cut(s)	1049
BpuEI	CTTGAG	3 cut(s)	276, 563, 581
BsaAI	YACGTR	1 cut(s)	688
BsaHI	GRCGYC	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	3 cut(s)	41, 717, 942
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	2 cut(s)	792, 878
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	3 cut(s)	41, 717, 942
BseGI	GGATG	3 cut(s)	232, 313, 982
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	792, 878
BseRI	GAGGAG	2 cut(s)	49, 58
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	877
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	5 cut(s)	31, 57, 114, 384, 491
BsmBI	CGTCTC	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	877
Bso31I	GGTCTC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	625, 938
BspACI	CCGC	4 cut(s)	96, 352, 386, 830
BspANI	GGCC	1 cut(s)	877
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	3 cut(s)	734, 940, 1063
BspPI	GGATC	2 cut(s)	933, 946
BspQI	GCTCTTC	2 cut(s)	15, 1047
BspTNI	GGTCTC	1 cut(s)	31
BsrBI	CCGCTC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	792, 878
BssECI	CCNNGG	3 cut(s)	41, 717, 942
BssMI	GATC	2 cut(s)	625, 938
BssNI	GRCGYC	1 cut(s)	100
BssT1I	CCWWGG	2 cut(s)	717, 942
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	2 cut(s)	15, 1047
BstACI	GRCGYC	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstBAI	YACGTR	1 cut(s)	688
BstC8I	GCNNGC	2 cut(s)	77, 714
BstDEI	CTNAG	2 cut(s)	92, 205
BstENI	CCTNNNNNAGG	1 cut(s)	73
BstF5I	GGATG	3 cut(s)	232, 313, 982
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	628, 941
BstMAI	GTCTC	5 cut(s)	31, 57, 114, 384, 491
BstMBI	GATC	2 cut(s)	625, 938
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 278, 977
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	406
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	938
BstYI	RGATCY	1 cut(s)	938
BsuRI	GGCC	1 cut(s)	877
BtsCI	GGATG	3 cut(s)	232, 313, 982
BtsIMutI	CAGTG	3 cut(s)	785, 868, 885
Cac8I	GCNNGC	2 cut(s)	77, 714
Cfr13I	GGNCC	3 cut(s)	410, 950, 1062
CseI	GACGC	3 cut(s)	167, 203, 239
Csp6I	GTAC	3 cut(s)	28, 529, 845
CviAII	CATG	6 cut(s)	124, 361, 400, 857, 873, 919
CviQI	GTAC	3 cut(s)	28, 529, 845
DdeI	CTNAG	2 cut(s)	92, 205
DpnI	GATC	2 cut(s)	627, 940
DpnII	GATC	2 cut(s)	625, 938
EaeI	YGGCCR	1 cut(s)	875
Eam1104I	CTCTTC	2 cut(s)	15, 1047
EarI	CTCTTC	2 cut(s)	15, 1047
Eco130I	CCWWGG	2 cut(s)	717, 942
Eco31I	GGTCTC	1 cut(s)	31
Eco47I	GGWCC	3 cut(s)	410, 950, 1062
Eco57I	CTGAAG	1 cut(s)	1023
EcoNI	CCTNNNNNAGG	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	1062
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	2 cut(s)	717, 942
EcoT22I	ATGCAT	1 cut(s)	913
ErhI	CCWWGG	2 cut(s)	717, 942
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	6 cut(s)	127, 364, 403, 860, 876, 922
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	6 cut(s)	123, 360, 399, 856, 872, 918
FauI	CCCGC	2 cut(s)	345, 379
FauNDI	CATATG	1 cut(s)	1009
FblI	GTMKAC	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	3 cut(s)	239, 320, 989
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	4 cut(s)	171, 222, 335, 477
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	877
HgaI	GACGC	3 cut(s)	167, 203, 239
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	6 cut(s)	127, 364, 403, 860, 876, 922
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	2 cut(s)	65, 86
HphI	GGTGA	2 cut(s)	323, 466
Hpy166II	GTNNAC	5 cut(s)	254, 314, 358, 370, 397
Hpy188I	TCNGA	1 cut(s)	446
Hpy188III	TCNNGA	3 cut(s)	293, 560, 1046
Hpy8I	GTNNAC	5 cut(s)	254, 314, 358, 370, 397
HpyAV	CCTTC	4 cut(s)	464, 690, 770, 941
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	3 cut(s)	100, 393, 687
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 278, 977
HpyF3I	CTNAG	2 cut(s)	92, 205
HpySE526I	ACGT	3 cut(s)	100, 393, 687
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	6 cut(s)	127, 364, 403, 860, 876, 922
Kzo9I	GATC	2 cut(s)	625, 938
LguI	GCTCTTC	2 cut(s)	15, 1047
LmnI	GCTCC	1 cut(s)	832
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	4 cut(s)	217, 892, 920, 967
MaeI	CTAG	4 cut(s)	171, 222, 335, 477
MaeII	ACGT	3 cut(s)	100, 393, 687
MaeIII	GTNAC	2 cut(s)	200, 521
MalI	GATC	2 cut(s)	627, 940
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	2 cut(s)	625, 938
MboII	GAAGA	6 cut(s)	32, 155, 577, 620, 627, 1034
MflI	RGATCY	1 cut(s)	938
MlsI	TGGCCA	1 cut(s)	877
MluNI	TGGCCA	1 cut(s)	877
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	3 cut(s)	424, 875, 977
MnlI	CCTC	9 cut(s)	27, 36, 79, 133, 358, 423, 967, 971, 1051
Mox20I	TGGCCA	1 cut(s)	877
Mph1103I	ATGCAT	1 cut(s)	913
MroXI	GAANNNNTTC	1 cut(s)	705
MscI	TGGCCA	1 cut(s)	877
MseI	TTAA	6 cut(s)	300, 741, 773, 816, 822, 1069
MslI	CAYNNNNRTG	1 cut(s)	861
Msp20I	TGGCCA	1 cut(s)	877
MspR9I	CCNGG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	167, 278, 977
NdeI	CATATG	1 cut(s)	1009
NdeII	GATC	2 cut(s)	625, 938
NlaIII	CATG	6 cut(s)	127, 364, 403, 860, 876, 922
NlaIV	GGNNCC	3 cut(s)	734, 940, 1063
NmuCI	GTSAC	2 cut(s)	200, 521
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	1 cut(s)	403
PciI	ACATGT	1 cut(s)	399
PciSI	GCTCTTC	2 cut(s)	15, 1047
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PctI	GAATGC	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	688
PpuMI	RGGWCCY	1 cut(s)	1062
PscI	ACATGT	1 cut(s)	399
PshBI	ATTAAT	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	1062
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	3 cut(s)	734, 940, 1063
PspPI	GGNCC	3 cut(s)	410, 950, 1062
PspPPI	RGGWCCY	1 cut(s)	1062
PsuI	RGATCY	1 cut(s)	938
RsaI	GTAC	3 cut(s)	29, 530, 846
RsaNI	GTAC	3 cut(s)	28, 529, 845
RseI	CAYNNNNRTG	1 cut(s)	861
SapI	GCTCTTC	2 cut(s)	15, 1047
SaqAI	TTAA	6 cut(s)	300, 741, 773, 816, 822, 1069
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	2 cut(s)	625, 938
Sau96I	GGNCC	3 cut(s)	410, 950, 1062
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	408
SfaNI	GCATC	4 cut(s)	217, 892, 920, 967
SinI	GGWCC	3 cut(s)	410, 950, 1062
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	3 cut(s)	291, 542, 560
SmoI	CTYRAG	3 cut(s)	291, 542, 560
SsiI	CCGC	4 cut(s)	96, 352, 386, 830
SspMI	CTAG	4 cut(s)	171, 222, 335, 477
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	2 cut(s)	717, 942
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	3 cut(s)	103, 396, 690
TaqII	GACCGA	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	6 cut(s)	300, 741, 773, 816, 822, 1069
Tru9I	TTAA	6 cut(s)	300, 741, 773, 816, 822, 1069
TscAI	CASTG	3 cut(s)	792, 868, 885
TseFI	GTSAC	2 cut(s)	200, 521
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	2 cut(s)	200, 521
TspDTI	ATGAA	2 cut(s)	662, 935
TspGWI	ACGGA	2 cut(s)	832, 951
TspRI	CASTG	3 cut(s)	792, 868, 885
VpaK11BI	GGWCC	3 cut(s)	410, 950, 1062
VspI	ATTAAT	1 cut(s)	300
XagI	CCTNNNNNAGG	1 cut(s)	73
XapI	RAATTY	4 cut(s)	263, 650, 747, 1027
XceI	RCATGY	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	4 cut(s)	171, 222, 335, 477
ZraI	GACGTC	1 cut(s)	101
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.