FvH4_2g36870

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016497
Physical Location & Seq
Forward (+)
26925013 .. 26927624
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36870.t2

Sequence Viewer

Length: 981 bp
ATGAATGCTCTTCCTCTGCTCTCTCTTCTTCTTCTTCTTCCTCTTACTCTGAGCATAACTAGTGCTCAGCTTCGAGTTGATCATTACAGAAACACATGCCCGAATGTCGAATCAATTGTCCATGCCGCAGTTAAGCAGAAGTTTGAGCAGACATTTACAACAGCACCAGGCACTCTCAGACTCTTCTTCCATGATTGCTTCGTCCGGGGATGTGATGCTTCAGTGATACTAGCTTTTAGGAACAAGTCGGCGGAGAAGGACAACCCGGACGATATGTCACTCGCCGGAGACGGGTTTGACACGGTGATCAGAGCCAAGGCTGCTGTTGATAGAGTGGCTGGATGCAGGAACAAGGTTTCTTGCGCTGACATTCTTGCCATGGCCACAAGAGATGTCATATCACTGAGTGGAGGACCATTCTATGGAGTTGAACTGGGGAGACTTGATGGGAGGGTGTCCACGAAAACCAGTGTGAGGAAGCATCTTCCTAAACCTGACTTTAGAGTGGACCAGCTGAAATCTATGTTTGCGCAACATGGTCTCACTCTAACCGATCTCGTTGCTCTCTCCGGGGCTCATACGATCGGGTTCTCACACTGCGACCGATTCAACCACAGGATACACAGATTCAAGAGCAAGAACAGAATGGATCCGACGATGAATGTGGGTTACGCAATGAGCCTCAGGAAACAGTGTCCGAAGAATGTAGACCCGAGAACTGCGATTACTTTGGACCCAACAACGCCGCGGAGATTCGACAACATGTACTACAAGAACCTTCAGCAAGGAAGAGGGTTGCTTACCTCTGATCAGTGTCTGTATACCGACACCAGAACAAGGCACATTGTCAACTTTTTTGCAGCAAACAACACAGCCTTTGAACATGCATTCGTGGCTGCCATTACAAAGCTTGGTAGGGTGGGGGTTAAGACTACTGGAAAGCAAGGTGAAATTAGACGTGATTGTACTGCTGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

327

Amino Acids

36.24

Weight (kDa)

9.66

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 6 - 198 1.9e-61 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016497)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36870
malus_domestica MD15G1108300.v1.1
prunus_persica Prupe.1G460600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304911
rosa_laevigata RLG00000010939
rosa_multiflora Rmu_sc0000301.1_g000011 Rmu_sc0004222.1_g000001
rosa_roxburghii Rroxscaffold_7G00163350
rosa_rugosa Rorug06G0336200
rosa_samantha Rh6AG447500 Rh6BG454000 Rh6CG461000 Rh6DG448000
rosa_wichuraiana Rw6G038960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 531
AccB7I CCANNNNNTGG 1 cut(s) 422
AccI GTMKAC 2 cut(s) 708, 821
AccII CGCG 1 cut(s) 748
AciI CCGC 4 cut(s) 126, 251, 746, 748
AclWI GGATC 2 cut(s) 644, 657
AcoI YGGCCR 1 cut(s) 381
AcuI CTGAAG 2 cut(s) 204, 764
AdeI CACNNNGTG 1 cut(s) 407
AfaI GTAC 2 cut(s) 767, 967
AfiI CCNNNNNNNGG 4 cut(s) 291, 422, 474, 837
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 4 cut(s) 431, 610, 631, 881
AhdI GACNNNNNGTC 1 cut(s) 274
AhlI ACTAGT 1 cut(s) 59
AjiI CACGTC 1 cut(s) 959
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 4 cut(s) 70, 233, 514, 910
AluI AGCT 4 cut(s) 70, 233, 514, 910
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 3 cut(s) 282, 433, 545
AlwI GGATC 2 cut(s) 644, 657
AlwNI CAGNNNCTG 1 cut(s) 817
Ama87I CYCGRG 1 cut(s) 712
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 3 cut(s) 320, 860, 896
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
AspLEI GCGC 2 cut(s) 365, 532
AspS9I GGNCC 3 cut(s) 413, 508, 733
AsuC2I CCSGG 3 cut(s) 206, 266, 571
AsuHPI GGTGA 2 cut(s) 316, 959
AvaI CYCGRG 1 cut(s) 712
AvaII GGWCC 3 cut(s) 413, 508, 733
AxyI CCTNAGG 1 cut(s) 683
BalI TGGCCA 1 cut(s) 383
BamHI GGATCC 1 cut(s) 649
BanII GRGCYC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 307, 872, 883
BccI CCATC 1 cut(s) 440
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 1 cut(s) 612
BclI TGATCA 3 cut(s) 79, 306, 808
BcnI CCSGG 3 cut(s) 206, 266, 571
BcoDI GTCTC 3 cut(s) 282, 433, 545
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 2 cut(s) 60, 230
BfuI GTATCC 1 cut(s) 612
BisI GCNGC 5 cut(s) 126, 321, 746, 861, 897
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 5 cut(s) 127, 322, 747, 862, 898
Bme1390I CCNGG 4 cut(s) 168, 206, 266, 571
Bme18I GGWCC 3 cut(s) 413, 508, 733
BmeRI GACNNNNNGTC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 712
BmgBI CACGTC 1 cut(s) 959
BmgT120I GGNCC 3 cut(s) 413, 508, 733
BmiI GGNNCC 2 cut(s) 651, 735
BmrFI CCNGG 4 cut(s) 168, 206, 266, 571
BmrI ACTGGG 1 cut(s) 443
BmsI GCATC 3 cut(s) 205, 332, 490
BmuI ACTGGG 1 cut(s) 443
Bpu1102I GCTNAGC 1 cut(s) 66
BpuMI CCSGG 3 cut(s) 206, 266, 571
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 5 cut(s) 205, 315, 378, 570, 746
Bsc4I CCNNNNNNNGG 4 cut(s) 291, 422, 474, 837
Bse1I ACTGG 3 cut(s) 438, 468, 940
Bse21I CCTNAGG 1 cut(s) 683
Bse3DI GCAATG 1 cut(s) 681
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 5 cut(s) 205, 315, 378, 570, 746
BseGI GGATG 2 cut(s) 215, 347
BseLI CCNNNNNNNGG 4 cut(s) 291, 422, 474, 837
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 5 cut(s) 41, 80, 190, 395, 697
BseNI ACTGG 3 cut(s) 438, 468, 940
BseXI GCAGC 3 cut(s) 307, 872, 883
Bsh1236I CGCG 1 cut(s) 748
Bsh1285I CGRYCG 2 cut(s) 585, 604
BshFI GGCC 1 cut(s) 383
BsiEI CGRYCG 2 cut(s) 585, 604
BsiHKAI GWGCWC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 4 cut(s) 205, 266, 285, 570
BslI CCNNNNNNNGG 4 cut(s) 291, 422, 474, 837
BsmAI GTCTC 3 cut(s) 282, 433, 545
BsmBI CGTCTC 1 cut(s) 282
BsmI GAATGC 2 cut(s) 10, 887
BsnI GGCC 1 cut(s) 383
Bso31I GGTCTC 1 cut(s) 545
BsoBI CYCGRG 1 cut(s) 712
Bsp1286I GDGCHC 2 cut(s) 67, 577
Bsp143I GATC 6 cut(s) 79, 306, 553, 582, 649, 808
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 4 cut(s) 126, 251, 746, 748
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 5 cut(s) 42, 79, 189, 396, 696
BspFNI CGCG 1 cut(s) 748
BspLI GGNNCC 2 cut(s) 651, 735
BspPI GGATC 2 cut(s) 644, 657
BspQI GCTCTTC 1 cut(s) 15
BspTNI GGTCTC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 681
BsrI ACTGG 3 cut(s) 438, 468, 940
BssECI CCNNGG 5 cut(s) 205, 315, 378, 570, 746
BssMI GATC 6 cut(s) 79, 306, 553, 582, 649, 808
BssNAI GTATAC 1 cut(s) 822
BssT1I CCWWGG 2 cut(s) 315, 378
Bst1107I GTATAC 1 cut(s) 822
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 304, 693
Bst6I CTCTTC 4 cut(s) 15, 30, 188, 784
BstDEI CTNAG 5 cut(s) 50, 66, 176, 404, 683
BstDSI CCRYGG 2 cut(s) 378, 746
BstF5I GGATG 2 cut(s) 215, 347
BstFNI CGCG 1 cut(s) 748
BstHHI GCGC 2 cut(s) 365, 532
BstKTI GATC 6 cut(s) 82, 309, 556, 585, 652, 811
BstMAI GTCTC 3 cut(s) 282, 433, 545
BstMBI GATC 6 cut(s) 79, 306, 553, 582, 649, 808
BstMCI CGRYCG 2 cut(s) 585, 604
BstMWI GCNNNNNNNGC 2 cut(s) 320, 893
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 3 cut(s) 99, 766, 887
BstSCI CCNGG 4 cut(s) 166, 204, 264, 569
BstUI CGCG 1 cut(s) 748
BstV1I GCAGC 3 cut(s) 307, 872, 883
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BstZ17I GTATAC 1 cut(s) 822
Bsu36I CCTNAGG 1 cut(s) 683
BsuI GTATCC 1 cut(s) 612
BsuRI GGCC 1 cut(s) 383
BtgI CCRYGG 2 cut(s) 378, 746
BtrI CACGTC 1 cut(s) 959
BtsCI GGATG 2 cut(s) 215, 347
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 6 cut(s) 228, 401, 475, 595, 698, 818
CaiI CAGNNNCTG 1 cut(s) 817
CfoI GCGC 2 cut(s) 365, 532
Cfr13I GGNCC 3 cut(s) 413, 508, 733
Cfr42I CCGCGG 1 cut(s) 749
Csp6I GTAC 2 cut(s) 766, 966
CviAII CATG 7 cut(s) 96, 122, 191, 379, 536, 763, 884
CviQI GTAC 2 cut(s) 766, 966
DdeI CTNAG 5 cut(s) 50, 66, 176, 404, 683
DpnI GATC 6 cut(s) 81, 308, 555, 584, 651, 810
DpnII GATC 6 cut(s) 79, 306, 553, 582, 649, 808
DraIII CACNNNGTG 1 cut(s) 407
DriI GACNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 4 cut(s) 15, 30, 188, 784
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 4 cut(s) 15, 30, 188, 784
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 315, 378
Eco24I GRGCYC 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 545
Eco47I GGWCC 3 cut(s) 413, 508, 733
Eco57I CTGAAG 2 cut(s) 204, 764
Eco81I CCTNAGG 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 712
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 315, 378
EcoT22I ATGCAT 1 cut(s) 889
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 2 cut(s) 315, 378
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 7 cut(s) 99, 125, 194, 382, 539, 766, 887
FatI CATG 7 cut(s) 95, 121, 190, 378, 535, 762, 883
FbaI TGATCA 3 cut(s) 79, 306, 808
FblI GTMKAC 2 cut(s) 708, 821
Fnu4HI GCNGC 5 cut(s) 126, 321, 746, 861, 897
FokI GGATG 2 cut(s) 222, 354
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 5 cut(s) 126, 321, 746, 861, 897
FspBI CTAG 2 cut(s) 60, 230
FspI TGCGCA 1 cut(s) 531
GlaI GCGC 2 cut(s) 364, 531
GluI GCNGC 5 cut(s) 126, 321, 746, 861, 897
HaeIII GGCC 1 cut(s) 383
HapII CCGG 4 cut(s) 205, 266, 285, 570
HhaI GCGC 2 cut(s) 365, 532
Hin1II CATG 7 cut(s) 99, 125, 194, 382, 539, 766, 887
Hin6I GCGC 2 cut(s) 363, 530
HinP1I GCGC 2 cut(s) 363, 530
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HindIII AAGCTT 1 cut(s) 908
HinfI GANTC 5 cut(s) 110, 180, 606, 627, 753
HpaII CCGG 4 cut(s) 205, 266, 285, 570
HphI GGTGA 2 cut(s) 316, 959
Hpy166II GTNNAC 6 cut(s) 459, 508, 709, 822, 850, 976
Hpy188I TCNGA 6 cut(s) 51, 179, 311, 654, 699, 808
Hpy188III TCNNGA 2 cut(s) 631, 685
Hpy8I GTNNAC 6 cut(s) 459, 508, 709, 822, 850, 976
Hpy99I CGWCG 1 cut(s) 658
HpyAV CCTTC 2 cut(s) 250, 788
HpyCH4III ACNGT 2 cut(s) 304, 693
HpyCH4IV ACGT 1 cut(s) 958
HpyCH4V TGCA 3 cut(s) 345, 860, 887
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 893
HpyF3I CTNAG 5 cut(s) 50, 66, 176, 404, 683
HpySE526I ACGT 1 cut(s) 958
Hsp92II CATG 7 cut(s) 99, 125, 194, 382, 539, 766, 887
HspAI GCGC 2 cut(s) 363, 530
Ksp22I TGATCA 3 cut(s) 79, 306, 808
KspI CCGCGG 1 cut(s) 749
Kzo9I GATC 6 cut(s) 79, 306, 553, 582, 649, 808
LguI GCTCTTC 1 cut(s) 15
Lsp1109I GCAGC 3 cut(s) 307, 872, 883
LweI GCATC 3 cut(s) 205, 332, 490
MaeI CTAG 2 cut(s) 60, 230
MaeII ACGT 1 cut(s) 958
MaeIII GTNAC 2 cut(s) 276, 668
MalI GATC 6 cut(s) 81, 308, 555, 584, 651, 810
MboI GATC 6 cut(s) 79, 306, 553, 582, 649, 808
MfeI CAATTG 1 cut(s) 114
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 2 cut(s) 67, 577
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 2 cut(s) 114, 951
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 677
MnlI CCTC 8 cut(s) 24, 51, 404, 444, 468, 692, 785, 814
Mox20I TGGCCA 1 cut(s) 383
Mph1103I ATGCAT 1 cut(s) 889
MscI TGGCCA 1 cut(s) 383
MseI TTAA 2 cut(s) 132, 927
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 2 cut(s) 514, 748
MspI CCGG 4 cut(s) 205, 266, 285, 570
MspR9I CCNGG 4 cut(s) 168, 206, 266, 571
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 2 cut(s) 10, 887
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 748
MwoI GCNNNNNNNGC 2 cut(s) 320, 893
NciI CCSGG 3 cut(s) 206, 266, 571
NcoI CCATGG 1 cut(s) 378
NdeII GATC 6 cut(s) 79, 306, 553, 582, 649, 808
NlaIII CATG 7 cut(s) 99, 125, 194, 382, 539, 766, 887
NlaIV GGNNCC 2 cut(s) 651, 735
NmuCI GTSAC 1 cut(s) 276
NsbI TGCGCA 1 cut(s) 531
NsiI ATGCAT 1 cut(s) 889
NspI RCATGY 3 cut(s) 99, 766, 887
PciI ACATGT 1 cut(s) 762
PciSI GCTCTTC 1 cut(s) 15
PctI GAATGC 2 cut(s) 10, 887
PfeI GAWTC 4 cut(s) 110, 606, 627, 753
PflMI CCANNNNNTGG 1 cut(s) 422
PkrI GCNGC 5 cut(s) 127, 322, 747, 862, 898
Ple19I CGATCG 1 cut(s) 585
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PscI ACATGT 1 cut(s) 762
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 651, 735
PspPI GGNCC 3 cut(s) 413, 508, 733
PsrI GAACNNNNNNTAC 2 cut(s) 709, 741
PstNI CAGNNNCTG 1 cut(s) 817
PsuI RGATCY 1 cut(s) 649
PvuI CGATCG 1 cut(s) 585
PvuII CAGCTG 1 cut(s) 514
RsaI GTAC 2 cut(s) 767, 967
RsaNI GTAC 2 cut(s) 766, 966
SacII CCGCGG 1 cut(s) 749
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 132, 927
SatI GCNGC 5 cut(s) 126, 321, 746, 861, 897
Sau3AI GATC 6 cut(s) 79, 306, 553, 582, 649, 808
Sau96I GGNCC 3 cut(s) 413, 508, 733
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 4 cut(s) 168, 206, 266, 571
SduI GDGCHC 2 cut(s) 67, 577
SfaNI GCATC 3 cut(s) 205, 332, 490
Sfr303I CCGCGG 1 cut(s) 749
SgrBI CCGCGG 1 cut(s) 749
SinI GGWCC 3 cut(s) 413, 508, 733
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 2 cut(s) 114, 951
SsiI CCGC 4 cut(s) 126, 251, 746, 748
SspMI CTAG 2 cut(s) 60, 230
StyD4I CCNGG 4 cut(s) 166, 204, 264, 569
StyI CCWWGG 2 cut(s) 315, 378
TaaI ACNGT 2 cut(s) 304, 693
TaiI ACGT 1 cut(s) 961
TaqI TCGA 3 cut(s) 73, 108, 756
TaqII GACCGA 1 cut(s) 618
TasI AATT 2 cut(s) 114, 951
TatI WGTACW 2 cut(s) 765, 965
TauI GCSGC 2 cut(s) 128, 748
TfiI GAWTC 4 cut(s) 110, 606, 627, 753
Tru1I TTAA 2 cut(s) 132, 927
Tru9I TTAA 2 cut(s) 132, 927
TscAI CASTG 6 cut(s) 228, 408, 475, 602, 698, 818
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 3 cut(s) 320, 860, 896
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 17, 674
TspRI CASTG 6 cut(s) 228, 408, 475, 602, 698, 818
Van91I CCANNNNNTGG 1 cut(s) 422
VpaK11BI GGWCC 3 cut(s) 413, 508, 733
XceI RCATGY 3 cut(s) 99, 766, 887
XmiI GTMKAC 2 cut(s) 708, 821
XspI CTAG 2 cut(s) 60, 230
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.