RLG00000010939

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016497
Physical Location & Seq
Forward (+)
5527667 .. 5529343
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010939

Sequence Viewer

Length: 981 bp
ATGAATGCTCATCTTCTTCCTTTGCTCTCTCTTCTTCTTCTTCTTCTTCTTCTGAGCACAACTAGTGCTCAACTTCGAGTCAATCATTACAGAAACACATGCCCAAATGTCGAATCAATTGTCCATGCCGCAGTAAAACAGAAATTTGAGCAGACATTTACGACTGCACCAGGCACTCTCAGACTCTTCTTCCACGATTGCTTTGTCCGGGGTTGTGATGCTTCAGTGATACTAGCTTTTAGGAACCACTCAGCGGAGAAGGATAACCCGGACGATATGTCACTCGCCGGAGACGGGTTTGACACGGTGATCAAAGCCAAGGCTGCTGTTGATAGAGTGGCTGGATGCAGGAACAAGGTTTCTTGTGCTGACATTCTTGCCATGGCCACAAGAGATGTCGTATCACTGAGTGGAGGACCATATTATGGAGTTGAACTGGGGAGACTTGATGGGAGGGTGTCCACAAAAACCAGTGTGAGGAAGCATCTTCCTCATCCTGATTTTAAAGTGGACCAACTGAAAGCTATGTTTGCCAAACATGGTCTCTCTCTAACCGATCTCATTGCTCTCTCGGGAGCTCATACGATCGGGTTCTCACACTGCAACCGATTCAACCACCGGATACACAACTTCAAGAGCAAGAACAGAATTGATCCAACGATGAATGTGGATTACGCAATGAGTCTAAGGAAACAGTGTCCGAAGAATGTAGACCAAAGAAATGCGATCACTTTGGACCCAACCACGCCGCAGAGATTCGATAACATGTACTACAAGAACCTTCAGCAAGGAAGAGGATTGCTTACTTCTGATCAGTGTTTGTTTACTGACACCAGAACAAGGCACATTGTCAACTTCTTTGCAGCAAACAACACAGCCTTTAAACATGCCTTCGTGGCTGCTATTACAAAGCTTGGTAGAGTTGGGGTTAAGACCGGAAAGCAGGGTGAAATTAGACGAGATTGTACCGCTGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

327

Amino Acids

36.23

Weight (kDa)

9.62

Isoelectric Point (pI)

27.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 290 2.9e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016497)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36870
malus_domestica MD15G1108300.v1.1
prunus_persica Prupe.1G460600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304911
rosa_laevigata RLG00000010939
rosa_multiflora Rmu_sc0000301.1_g000011 Rmu_sc0004222.1_g000001
rosa_roxburghii Rroxscaffold_7G00163350
rosa_rugosa Rorug06G0336200
rosa_samantha Rh6AG447500 Rh6BG454000 Rh6CG461000 Rh6DG448000
rosa_wichuraiana Rw6G038960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 425
AccI GTMKAC 1 cut(s) 711
AciI CCGC 4 cut(s) 129, 254, 749, 969
AclWI GGATC 1 cut(s) 647
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 2 cut(s) 207, 767
AdeI CACNNNGTG 1 cut(s) 410
AfaI GTAC 2 cut(s) 770, 967
AfiI CCNNNNNNNGG 5 cut(s) 253, 294, 425, 477, 840
AflIII ACRYGT 1 cut(s) 765
AgsI TTSAA 3 cut(s) 434, 613, 634
AhdI GACNNNNNGTC 1 cut(s) 277
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 4 cut(s) 236, 524, 578, 913
AluI AGCT 4 cut(s) 236, 524, 578, 913
Alw21I GWGCWC 3 cut(s) 59, 70, 580
Alw26I GTCTC 3 cut(s) 285, 436, 548
AlwI GGATC 1 cut(s) 647
Ama87I CYCGRG 1 cut(s) 571
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 3 cut(s) 323, 863, 899
ApoI RAATTY 1 cut(s) 143
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AspS9I GGNCC 3 cut(s) 416, 511, 736
AsuC2I CCSGG 2 cut(s) 209, 269
AsuHPI GGTGA 2 cut(s) 319, 959
AvaI CYCGRG 1 cut(s) 571
AvaII GGWCC 3 cut(s) 416, 511, 736
BalI TGGCCA 1 cut(s) 386
BanII GRGCYC 1 cut(s) 580
Bbv12I GWGCWC 3 cut(s) 59, 70, 580
BbvI GCAGC 3 cut(s) 310, 875, 886
BccI CCATC 1 cut(s) 443
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 1 cut(s) 171
BciVI GTATCC 1 cut(s) 615
BclI TGATCA 2 cut(s) 309, 811
BcnI CCSGG 2 cut(s) 209, 269
BcoDI GTCTC 3 cut(s) 285, 436, 548
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 2 cut(s) 63, 233
BfuI GTATCC 1 cut(s) 615
BglI GCCNNNNNGGC 1 cut(s) 896
BisI GCNGC 5 cut(s) 129, 324, 749, 864, 900
BlsI GCNGC 5 cut(s) 130, 325, 750, 865, 901
Bme1390I CCNGG 3 cut(s) 171, 209, 269
Bme18I GGWCC 3 cut(s) 416, 511, 736
BmeRI GACNNNNNGTC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 571
BmgT120I GGNCC 3 cut(s) 416, 511, 736
BmiI GGNNCC 2 cut(s) 245, 738
BmrFI CCNGG 3 cut(s) 171, 209, 269
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 3 cut(s) 208, 335, 493
BmuI ACTGGG 1 cut(s) 446
BpuMI CCSGG 2 cut(s) 209, 269
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 3 cut(s) 208, 318, 381
BsaWI WCCGGW 2 cut(s) 618, 935
Bsc4I CCNNNNNNNGG 5 cut(s) 253, 294, 425, 477, 840
Bse1I ACTGG 2 cut(s) 441, 471
Bse3DI GCAATG 2 cut(s) 561, 684
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 3 cut(s) 208, 318, 381
BseGI GGATG 2 cut(s) 350, 493
BseLI CCNNNNNNNGG 5 cut(s) 253, 294, 425, 477, 840
BseMI GCAATG 2 cut(s) 561, 684
BseMII CTCAG 4 cut(s) 44, 193, 264, 398
BseNI ACTGG 2 cut(s) 441, 471
BseXI GCAGC 3 cut(s) 310, 875, 886
BsgI GTGCAG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 588
BshFI GGCC 1 cut(s) 386
BsiEI CGRYCG 1 cut(s) 588
BsiHKAI GWGCWC 3 cut(s) 59, 70, 580
BsiHKCI CYCGRG 1 cut(s) 571
BsiSI CCGG 5 cut(s) 208, 269, 288, 619, 936
BslI CCNNNNNNNGG 5 cut(s) 253, 294, 425, 477, 840
BsmAI GTCTC 3 cut(s) 285, 436, 548
BsmBI CGTCTC 1 cut(s) 285
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 386
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 571
Bsp1286I GDGCHC 3 cut(s) 59, 70, 580
Bsp143I GATC 6 cut(s) 309, 556, 585, 652, 726, 811
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 4 cut(s) 129, 254, 749, 969
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 4 cut(s) 45, 192, 263, 399
BspLI GGNNCC 2 cut(s) 245, 738
BspPI GGATC 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 561, 684
BsrI ACTGG 2 cut(s) 441, 471
BssECI CCNNGG 3 cut(s) 208, 318, 381
BssMI GATC 6 cut(s) 309, 556, 585, 652, 726, 811
BssT1I CCWWGG 2 cut(s) 318, 381
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 307, 696
Bst6I CTCTTC 3 cut(s) 36, 191, 787
BstDEI CTNAG 5 cut(s) 53, 179, 250, 407, 686
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 350, 493
BstKTI GATC 6 cut(s) 312, 559, 588, 655, 729, 814
BstMAI GTCTC 3 cut(s) 285, 436, 548
BstMBI GATC 6 cut(s) 309, 556, 585, 652, 726, 811
BstMCI CGRYCG 1 cut(s) 588
BstMWI GCNNNNNNNGC 3 cut(s) 323, 530, 896
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 3 cut(s) 102, 769, 890
BstSCI CCNGG 3 cut(s) 169, 207, 267
BstV1I GCAGC 3 cut(s) 310, 875, 886
BsuI GTATCC 1 cut(s) 615
BsuRI GGCC 1 cut(s) 386
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 350, 493
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 6 cut(s) 231, 404, 478, 598, 701, 821
Cfr13I GGNCC 3 cut(s) 416, 511, 736
Csp6I GTAC 2 cut(s) 769, 966
CviAII CATG 6 cut(s) 99, 125, 382, 539, 766, 887
CviQI GTAC 2 cut(s) 769, 966
DdeI CTNAG 5 cut(s) 53, 179, 250, 407, 686
DpnI GATC 6 cut(s) 311, 558, 587, 654, 728, 813
DpnII GATC 6 cut(s) 309, 556, 585, 652, 726, 811
DraI TTTAAA 2 cut(s) 505, 883
DraIII CACNNNGTG 1 cut(s) 410
DriI GACNNNNNGTC 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 3 cut(s) 36, 191, 787
Eam1105I GACNNNNNGTC 1 cut(s) 277
EarI CTCTTC 3 cut(s) 36, 191, 787
Ecl136II GAGCTC 1 cut(s) 578
Eco130I CCWWGG 2 cut(s) 318, 381
Eco24I GRGCYC 1 cut(s) 580
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 3 cut(s) 416, 511, 736
Eco53kI GAGCTC 1 cut(s) 578
Eco57I CTGAAG 2 cut(s) 207, 767
Eco88I CYCGRG 1 cut(s) 571
EcoICRI GAGCTC 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 318, 381
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 2 cut(s) 318, 381
Esp3I CGTCTC 1 cut(s) 285
FaeI CATG 6 cut(s) 102, 128, 385, 542, 769, 890
FatI CATG 6 cut(s) 98, 124, 381, 538, 765, 886
FbaI TGATCA 2 cut(s) 309, 811
FblI GTMKAC 1 cut(s) 711
Fnu4HI GCNGC 5 cut(s) 129, 324, 749, 864, 900
FokI GGATG 2 cut(s) 357, 480
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 5 cut(s) 129, 324, 749, 864, 900
FspBI CTAG 2 cut(s) 63, 233
GluI GCNGC 5 cut(s) 129, 324, 749, 864, 900
HaeIII GGCC 1 cut(s) 386
HapII CCGG 5 cut(s) 208, 269, 288, 619, 936
Hin1II CATG 6 cut(s) 102, 128, 385, 542, 769, 890
HincII GTYRAC 1 cut(s) 853
HindII GTYRAC 1 cut(s) 853
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 6 cut(s) 78, 113, 183, 609, 682, 756
HpaII CCGG 5 cut(s) 208, 269, 288, 619, 936
HphI GGTGA 2 cut(s) 319, 959
Hpy166II GTNNAC 6 cut(s) 462, 511, 712, 825, 853, 976
Hpy188I TCNGA 4 cut(s) 54, 182, 702, 811
Hpy188III TCNNGA 3 cut(s) 497, 573, 634
Hpy8I GTNNAC 6 cut(s) 462, 511, 712, 825, 853, 976
HpyAV CCTTC 3 cut(s) 253, 791, 901
HpyCH4III ACNGT 2 cut(s) 307, 696
HpyCH4V TGCA 4 cut(s) 167, 348, 603, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 530, 896
HpyF3I CTNAG 5 cut(s) 53, 179, 250, 407, 686
Hsp92II CATG 6 cut(s) 102, 128, 385, 542, 769, 890
Ksp22I TGATCA 2 cut(s) 309, 811
Kzo9I GATC 6 cut(s) 309, 556, 585, 652, 726, 811
LmnI GCTCC 1 cut(s) 575
Lsp1109I GCAGC 3 cut(s) 310, 875, 886
LweI GCATC 3 cut(s) 208, 335, 493
MaeI CTAG 2 cut(s) 63, 233
MaeIII GTNAC 1 cut(s) 279
MalI GATC 6 cut(s) 311, 558, 587, 654, 728, 813
MboI GATC 6 cut(s) 309, 556, 585, 652, 726, 811
MfeI CAATTG 1 cut(s) 117
MhlI GDGCHC 3 cut(s) 59, 70, 580
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 4 cut(s) 117, 143, 648, 951
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 3 cut(s) 87, 177, 691
MmeI TCCRAC 1 cut(s) 680
MnlI CCTC 5 cut(s) 407, 447, 471, 501, 788
Mox20I TGGCCA 1 cut(s) 386
MscI TGGCCA 1 cut(s) 386
MseI TTAA 3 cut(s) 504, 882, 930
Msp20I TGGCCA 1 cut(s) 386
MspA1I CMGCKG 2 cut(s) 254, 971
MspI CCGG 5 cut(s) 208, 269, 288, 619, 936
MspR9I CCNGG 3 cut(s) 171, 209, 269
MunI CAATTG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 323, 530, 896
NciI CCSGG 2 cut(s) 209, 269
NcoI CCATGG 1 cut(s) 381
NdeII GATC 6 cut(s) 309, 556, 585, 652, 726, 811
NlaIII CATG 6 cut(s) 102, 128, 385, 542, 769, 890
NlaIV GGNNCC 2 cut(s) 245, 738
NmuCI GTSAC 1 cut(s) 279
NspI RCATGY 3 cut(s) 102, 769, 890
PciI ACATGT 1 cut(s) 765
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 113, 609, 756
PflMI CCANNNNNTGG 1 cut(s) 425
PkrI GCNGC 5 cut(s) 130, 325, 750, 865, 901
Ple19I CGATCG 1 cut(s) 588
PleI GAGTC 3 cut(s) 86, 177, 690
PpsI GAGTC 3 cut(s) 86, 177, 690
PscI ACATGT 1 cut(s) 765
Psp124BI GAGCTC 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 245, 738
PspPI GGNCC 3 cut(s) 416, 511, 736
PvuI CGATCG 1 cut(s) 588
RsaI GTAC 2 cut(s) 770, 967
RsaNI GTAC 2 cut(s) 769, 966
SacI GAGCTC 1 cut(s) 580
SaqAI TTAA 3 cut(s) 504, 882, 930
SatI GCNGC 5 cut(s) 129, 324, 749, 864, 900
Sau3AI GATC 6 cut(s) 309, 556, 585, 652, 726, 811
Sau96I GGNCC 3 cut(s) 416, 511, 736
SchI GAGTC 3 cut(s) 87, 177, 691
ScrFI CCNGG 3 cut(s) 171, 209, 269
SduI GDGCHC 3 cut(s) 59, 70, 580
SetI ASST 6 cut(s) 238, 360, 526, 580, 783, 915
SfaNI GCATC 3 cut(s) 208, 335, 493
SinI GGWCC 3 cut(s) 416, 511, 736
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 4 cut(s) 117, 143, 648, 951
SsiI CCGC 4 cut(s) 129, 254, 749, 969
SspMI CTAG 2 cut(s) 63, 233
SstI GAGCTC 1 cut(s) 580
StyD4I CCNGG 3 cut(s) 169, 207, 267
StyI CCWWGG 2 cut(s) 318, 381
TaaI ACNGT 2 cut(s) 307, 696
TaqI TCGA 3 cut(s) 76, 111, 759
TasI AATT 4 cut(s) 117, 143, 648, 951
TatI WGTACW 1 cut(s) 768
TauI GCSGC 2 cut(s) 131, 751
TfiI GAWTC 3 cut(s) 113, 609, 756
Tru1I TTAA 3 cut(s) 504, 882, 930
Tru9I TTAA 3 cut(s) 504, 882, 930
TscAI CASTG 6 cut(s) 231, 411, 478, 605, 701, 821
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 3 cut(s) 323, 863, 899
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 2 cut(s) 17, 677
TspRI CASTG 6 cut(s) 231, 411, 478, 605, 701, 821
Van91I CCANNNNNTGG 1 cut(s) 425
VpaK11BI GGWCC 3 cut(s) 416, 511, 736
XapI RAATTY 1 cut(s) 143
XceI RCATGY 3 cut(s) 102, 769, 890
XmiI GTMKAC 1 cut(s) 711
XspI CTAG 2 cut(s) 63, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.