Rh6BG454000

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016497
Physical Location & Seq
Forward (+)
66713503 .. 66715420
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG454000.1

Sequence Viewer

Length: 975 bp
ATGAATGCTCATCTTCTTCCTTTGCTCTCTCTTCTTCTTCTTCTTCTGAGCACAACTAGTGCTCAACTTCGAGTCGATCATTACAGAAACACATGCCCAAATGTCGAATCAATTGTCCATGCCGCAGTTAAACAGAAGTTTGAGCAGACATTTACGACTGCACCAGGCACTCTCAGACTCTTCTTCCACGATTGCTTTGTCCGGGGTTGCGATGCTTCAGTGATACTAGCTTTTAGGAACCACTCGGCGGAGAAGGATAACCCGGACGATATGTCACTCGCCGGAGACGGGTTTGACACGGTGATCAAAGCCAAGGCTGCTGTTGATAGAGTGGCTGGATGCAGGAACAAGGTTTCTTGTGCTGACATTCTTGCCATGGCCACAAGAGATGTCGTATCACTGAGTGGAGGACCATATTATGGAGTTGAATTGGGGAGACTTGATGGGAGGGTGTCCACAAAAACCAGTGTGAGGAAGCATCTTCCTCATCCTGATTTTAAAGTGGACCAACTGAAAGCTATGTTTTCCAAACATGGTCTCTCTCTAACCGATCTCATTGCTCTCTCGGGGGCTCATACGATCGGGTTCTCACACTGCAACCGATTCAACCACCGGATACACAACTTCAAGAGCAAGAACAGAATTGATCCGACAATGAATGTGGATTACGCAATGAGCCTCAGGAAACAGTGTCCGAAGAATGTAGACCCAAGAAATGCGATTACTTTGGACCCAACCACGCCGCAGAGATTCGATAACATGTACTACAAGAACCTTCAGCAAGGAAGAGGATTGCTTACTTCTGATCAGTGTTTGTTTACTGACACCAGAACAAGGCACATTGTCAACTTCTTTGCAGCAAACAACACAGCCTTTAAACATGCCTTCGTGGCTGCTATTACAAAGCTTGGTAGAGTTGGGGTTAAGACCGGAAAGCAAGGTGAAATTAGACGGGATTGTACCGCTGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

324

Amino Acids

35.99

Weight (kDa)

9.56

Isoelectric Point (pI)

26.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 39 - 288 7.6e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016497)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36870
malus_domestica MD15G1108300.v1.1
prunus_persica Prupe.1G460600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304911
rosa_laevigata RLG00000010939
rosa_multiflora Rmu_sc0000301.1_g000011 Rmu_sc0004222.1_g000001
rosa_roxburghii Rroxscaffold_7G00163350
rosa_rugosa Rorug06G0336200
rosa_samantha Rh6AG447500 Rh6BG454000 Rh6CG461000 Rh6DG448000
rosa_wichuraiana Rw6G038960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 419
AccI GTMKAC 1 cut(s) 705
AciI CCGC 4 cut(s) 123, 248, 743, 963
AclWI GGATC 1 cut(s) 641
AcoI YGGCCR 1 cut(s) 378
AcuI CTGAAG 2 cut(s) 201, 761
AdeI CACNNNGTG 1 cut(s) 404
AfaI GTAC 2 cut(s) 764, 961
AfiI CCNNNNNNNGG 5 cut(s) 247, 288, 419, 471, 834
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 3 cut(s) 428, 607, 628
AhdI GACNNNNNGTC 1 cut(s) 271
AhlI ACTAGT 1 cut(s) 56
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 3 cut(s) 230, 518, 907
AluI AGCT 3 cut(s) 230, 518, 907
Alw21I GWGCWC 2 cut(s) 53, 64
Alw26I GTCTC 3 cut(s) 279, 430, 542
AlwI GGATC 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 565
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 3 cut(s) 317, 857, 893
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
AspS9I GGNCC 3 cut(s) 410, 505, 730
AsuC2I CCSGG 2 cut(s) 203, 263
AsuHPI GGTGA 2 cut(s) 313, 953
AvaI CYCGRG 1 cut(s) 565
AvaII GGWCC 3 cut(s) 410, 505, 730
AxyI CCTNAGG 1 cut(s) 680
BalI TGGCCA 1 cut(s) 380
BanII GRGCYC 1 cut(s) 574
Bbv12I GWGCWC 2 cut(s) 53, 64
BbvI GCAGC 3 cut(s) 304, 869, 880
BccI CCATC 1 cut(s) 437
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciT130I CCWGG 1 cut(s) 165
BciVI GTATCC 1 cut(s) 609
BclI TGATCA 2 cut(s) 303, 805
BcnI CCSGG 2 cut(s) 203, 263
BcoDI GTCTC 3 cut(s) 279, 430, 542
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 2 cut(s) 57, 227
BfuI GTATCC 1 cut(s) 609
BglI GCCNNNNNGGC 1 cut(s) 890
BisI GCNGC 5 cut(s) 123, 318, 743, 858, 894
BlsI GCNGC 5 cut(s) 124, 319, 744, 859, 895
Bme1390I CCNGG 3 cut(s) 165, 203, 263
Bme18I GGWCC 3 cut(s) 410, 505, 730
BmeRI GACNNNNNGTC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 565
BmgT120I GGNCC 3 cut(s) 410, 505, 730
BmiI GGNNCC 2 cut(s) 239, 732
BmrFI CCNGG 3 cut(s) 165, 203, 263
BmsI GCATC 3 cut(s) 202, 329, 487
BpuMI CCSGG 2 cut(s) 203, 263
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 3 cut(s) 202, 312, 375
BsaWI WCCGGW 2 cut(s) 612, 929
Bsc4I CCNNNNNNNGG 5 cut(s) 247, 288, 419, 471, 834
Bse1I ACTGG 1 cut(s) 465
Bse21I CCTNAGG 1 cut(s) 680
Bse3DI GCAATG 2 cut(s) 555, 678
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 3 cut(s) 202, 312, 375
BseGI GGATG 2 cut(s) 344, 487
BseLI CCNNNNNNNGG 5 cut(s) 247, 288, 419, 471, 834
BseMI GCAATG 2 cut(s) 555, 678
BseMII CTCAG 4 cut(s) 38, 187, 392, 694
BseNI ACTGG 1 cut(s) 465
BseXI GCAGC 3 cut(s) 304, 869, 880
BsgI GTGCAG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 1 cut(s) 380
BsiEI CGRYCG 1 cut(s) 582
BsiHKAI GWGCWC 2 cut(s) 53, 64
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 5 cut(s) 202, 263, 282, 613, 930
BslI CCNNNNNNNGG 5 cut(s) 247, 288, 419, 471, 834
BsmAI GTCTC 3 cut(s) 279, 430, 542
BsmBI CGTCTC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 380
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 565
Bsp1286I GDGCHC 3 cut(s) 53, 64, 574
Bsp143I GATC 6 cut(s) 76, 303, 550, 579, 646, 805
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 4 cut(s) 123, 248, 743, 963
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 4 cut(s) 39, 186, 393, 693
BspLI GGNNCC 2 cut(s) 239, 732
BspPI GGATC 1 cut(s) 641
BspTNI GGTCTC 1 cut(s) 542
BsrDI GCAATG 2 cut(s) 555, 678
BsrI ACTGG 1 cut(s) 465
BssECI CCNNGG 3 cut(s) 202, 312, 375
BssMI GATC 6 cut(s) 76, 303, 550, 579, 646, 805
BssT1I CCWWGG 2 cut(s) 312, 375
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 301, 690
Bst6I CTCTTC 3 cut(s) 36, 185, 781
BstDEI CTNAG 4 cut(s) 47, 173, 401, 680
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 344, 487
BstKTI GATC 6 cut(s) 79, 306, 553, 582, 649, 808
BstMAI GTCTC 3 cut(s) 279, 430, 542
BstMBI GATC 6 cut(s) 76, 303, 550, 579, 646, 805
BstMCI CGRYCG 1 cut(s) 582
BstMWI GCNNNNNNNGC 2 cut(s) 317, 890
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 3 cut(s) 96, 763, 884
BstSCI CCNGG 3 cut(s) 163, 201, 261
BstV1I GCAGC 3 cut(s) 304, 869, 880
Bsu36I CCTNAGG 1 cut(s) 680
BsuI GTATCC 1 cut(s) 609
BsuRI GGCC 1 cut(s) 380
BtgI CCRYGG 1 cut(s) 375
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 2 cut(s) 344, 487
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 6 cut(s) 225, 398, 472, 592, 695, 815
Cfr13I GGNCC 3 cut(s) 410, 505, 730
Csp6I GTAC 2 cut(s) 763, 960
CspCI CAANNNNNGTGG 2 cut(s) 642, 677
CviAII CATG 6 cut(s) 93, 119, 376, 533, 760, 881
CviQI GTAC 2 cut(s) 763, 960
DdeI CTNAG 4 cut(s) 47, 173, 401, 680
DpnI GATC 6 cut(s) 78, 305, 552, 581, 648, 807
DpnII GATC 6 cut(s) 76, 303, 550, 579, 646, 805
DraI TTTAAA 2 cut(s) 499, 877
DraIII CACNNNGTG 1 cut(s) 404
DriI GACNNNNNGTC 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 3 cut(s) 36, 185, 781
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 3 cut(s) 36, 185, 781
EciI GGCGGA 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 312, 375
Eco24I GRGCYC 1 cut(s) 574
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 3 cut(s) 410, 505, 730
Eco57I CTGAAG 2 cut(s) 201, 761
Eco81I CCTNAGG 1 cut(s) 680
Eco88I CYCGRG 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 312, 375
EcoT38I GRGCYC 1 cut(s) 574
ErhI CCWWGG 2 cut(s) 312, 375
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 6 cut(s) 96, 122, 379, 536, 763, 884
FatI CATG 6 cut(s) 92, 118, 375, 532, 759, 880
FbaI TGATCA 2 cut(s) 303, 805
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 5 cut(s) 123, 318, 743, 858, 894
FokI GGATG 2 cut(s) 351, 474
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 5 cut(s) 123, 318, 743, 858, 894
FspBI CTAG 2 cut(s) 57, 227
GluI GCNGC 5 cut(s) 123, 318, 743, 858, 894
HaeIII GGCC 1 cut(s) 380
HapII CCGG 5 cut(s) 202, 263, 282, 613, 930
Hin1II CATG 6 cut(s) 96, 122, 379, 536, 763, 884
HincII GTYRAC 1 cut(s) 847
HindII GTYRAC 1 cut(s) 847
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 5 cut(s) 72, 107, 177, 603, 750
HpaII CCGG 5 cut(s) 202, 263, 282, 613, 930
HphI GGTGA 2 cut(s) 313, 953
Hpy166II GTNNAC 6 cut(s) 456, 505, 706, 819, 847, 970
Hpy188I TCNGA 5 cut(s) 48, 176, 651, 696, 805
Hpy188III TCNNGA 3 cut(s) 491, 628, 682
Hpy8I GTNNAC 6 cut(s) 456, 505, 706, 819, 847, 970
HpyAV CCTTC 3 cut(s) 247, 785, 895
HpyCH4III ACNGT 2 cut(s) 301, 690
HpyCH4V TGCA 4 cut(s) 161, 342, 597, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 890
HpyF3I CTNAG 4 cut(s) 47, 173, 401, 680
Hsp92II CATG 6 cut(s) 96, 122, 379, 536, 763, 884
Ksp22I TGATCA 2 cut(s) 303, 805
Kzo9I GATC 6 cut(s) 76, 303, 550, 579, 646, 805
Lsp1109I GCAGC 3 cut(s) 304, 869, 880
LweI GCATC 3 cut(s) 202, 329, 487
MaeI CTAG 2 cut(s) 57, 227
MaeIII GTNAC 1 cut(s) 273
MalI GATC 6 cut(s) 78, 305, 552, 581, 648, 807
MboI GATC 6 cut(s) 76, 303, 550, 579, 646, 805
MfeI CAATTG 1 cut(s) 111
MhlI GDGCHC 3 cut(s) 53, 64, 574
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 4 cut(s) 111, 428, 642, 945
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 2 cut(s) 81, 171
MmeI TCCRAC 1 cut(s) 674
MnlI CCTC 6 cut(s) 401, 441, 465, 495, 689, 782
Mox20I TGGCCA 1 cut(s) 380
MscI TGGCCA 1 cut(s) 380
MseI TTAA 4 cut(s) 129, 498, 876, 924
Msp20I TGGCCA 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 965
MspI CCGG 5 cut(s) 202, 263, 282, 613, 930
MspR9I CCNGG 3 cut(s) 165, 203, 263
MunI CAATTG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 317, 890
NciI CCSGG 2 cut(s) 203, 263
NcoI CCATGG 1 cut(s) 375
NdeII GATC 6 cut(s) 76, 303, 550, 579, 646, 805
NlaIII CATG 6 cut(s) 96, 122, 379, 536, 763, 884
NlaIV GGNNCC 2 cut(s) 239, 732
NmeAIII GCCGAG 1 cut(s) 224
NmuCI GTSAC 1 cut(s) 273
NspI RCATGY 3 cut(s) 96, 763, 884
PciI ACATGT 1 cut(s) 759
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 107, 603, 750
PflMI CCANNNNNTGG 1 cut(s) 419
PkrI GCNGC 5 cut(s) 124, 319, 744, 859, 895
Ple19I CGATCG 1 cut(s) 582
PleI GAGTC 2 cut(s) 80, 171
PpsI GAGTC 2 cut(s) 80, 171
PscI ACATGT 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 239, 732
PspPI GGNCC 3 cut(s) 410, 505, 730
PvuI CGATCG 1 cut(s) 582
RsaI GTAC 2 cut(s) 764, 961
RsaNI GTAC 2 cut(s) 763, 960
SaqAI TTAA 4 cut(s) 129, 498, 876, 924
SatI GCNGC 5 cut(s) 123, 318, 743, 858, 894
Sau3AI GATC 6 cut(s) 76, 303, 550, 579, 646, 805
Sau96I GGNCC 3 cut(s) 410, 505, 730
SchI GAGTC 2 cut(s) 81, 171
ScrFI CCNGG 3 cut(s) 165, 203, 263
SduI GDGCHC 3 cut(s) 53, 64, 574
SetI ASST 6 cut(s) 232, 354, 520, 777, 909, 943
SfaNI GCATC 3 cut(s) 202, 329, 487
SinI GGWCC 3 cut(s) 410, 505, 730
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 4 cut(s) 111, 428, 642, 945
SsiI CCGC 4 cut(s) 123, 248, 743, 963
SspMI CTAG 2 cut(s) 57, 227
StyD4I CCNGG 3 cut(s) 163, 201, 261
StyI CCWWGG 2 cut(s) 312, 375
TaaI ACNGT 2 cut(s) 301, 690
TaqI TCGA 4 cut(s) 70, 75, 105, 753
TasI AATT 4 cut(s) 111, 428, 642, 945
TatI WGTACW 1 cut(s) 762
TauI GCSGC 2 cut(s) 125, 745
TfiI GAWTC 3 cut(s) 107, 603, 750
Tru1I TTAA 4 cut(s) 129, 498, 876, 924
Tru9I TTAA 4 cut(s) 129, 498, 876, 924
TscAI CASTG 6 cut(s) 225, 405, 472, 599, 695, 815
TseFI GTSAC 1 cut(s) 273
TseI GCWGC 3 cut(s) 317, 857, 893
Tsp45I GTSAC 1 cut(s) 273
TspDTI ATGAA 2 cut(s) 17, 671
TspRI CASTG 6 cut(s) 225, 405, 472, 599, 695, 815
Van91I CCANNNNNTGG 1 cut(s) 419
VpaK11BI GGWCC 3 cut(s) 410, 505, 730
XceI RCATGY 3 cut(s) 96, 763, 884
XmiI GTMKAC 1 cut(s) 705
XspI CTAG 2 cut(s) 57, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.