Rh6CG461000

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016497
Physical Location & Seq
Reverse (-)
63497924 .. 63499814
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG461000.1

Sequence Viewer

Length: 972 bp
ATGAATGCTCATCTTCTTCCTTTGCTCTCTCTTCTTCTTCTTCTGAGCACAACTAGTGCTCAACTTCGAGTCGATCATTACAGAAACACATGCCCAAATGTCGAATCAATTGTCCATGCCGCAGTTAAACAGAAGTTTGAGCAGACATTTACGACTGCACCAGGCACTCTCAGACTCTTCTTCCACGATTGCTTTGTCCGGGGTTGTGATGCTTCAGTGATACTAGCTTTTAGGAACCACTCGGCGGAGAAGGATAACCCGGACGATATGTCACTCGCCGGAGACGGGTTTGACACGGTGATCAAAGCCAAGGCTGCTGTTGATAGAGTGGCTGGATGCAGGAACAAGGTTTCTTGTGCTGACATTCTTGCCATGGCCACAAGAGATGTCGTATCACTGAGTGGAGGACCATATTATGGAGTTGAATTGGGGAGACTTGATGGGAGGGTGTCCACAAAAACCAGTGTGAGGAAGCATCTTCCTCATCCTGATTTTAAAGTGGACCAACTGAAAGCTATGTTTTCCAAACATGGTCTCTCTCTAACCGATCTCATTGCTCTCTCGGGGGCTCATACGATCGGGTTCTCACACTGCAACCGATTCAACCACCGGATACACAACTTCAAGAGCAAGAACAGAATTGATCCGACAATGAATGTGGATTACGCAATGAGCCTCAGGAAACAGTGTCCGAAGAATGTAGACCCAAGAAATGCGATTACTTTGGACCCAACCACGCCGCAGAGATTCGATAACATGTACTACAAGAACCTTCAGCAAGGAAGAGGATTGCTTACTTCTGATCAGTGTTTGTTTACTGACACCAGAACAAGGCACATTGTCAACTTCTTTGCAGCAAACAACACAGCCTTTAAACATGCCTTCGTGGCTGCTATTACAAAGCTTGGTAGAGTTGGGGTTAAGACCGGAAAGCAAGGTGAAATTAGACGGGATTGTACCGCTGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

323

Amino Acids

35.88

Weight (kDa)

9.56

Isoelectric Point (pI)

26.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 38 - 287 7.5e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016497)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36870
malus_domestica MD15G1108300.v1.1
prunus_persica Prupe.1G460600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304911
rosa_laevigata RLG00000010939
rosa_multiflora Rmu_sc0000301.1_g000011 Rmu_sc0004222.1_g000001
rosa_roxburghii Rroxscaffold_7G00163350
rosa_rugosa Rorug06G0336200
rosa_samantha Rh6AG447500 Rh6BG454000 Rh6CG461000 Rh6DG448000
rosa_wichuraiana Rw6G038960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 416
AccI GTMKAC 1 cut(s) 702
AciI CCGC 4 cut(s) 120, 245, 740, 960
AclWI GGATC 1 cut(s) 638
AcoI YGGCCR 1 cut(s) 375
AcuI CTGAAG 2 cut(s) 198, 758
AdeI CACNNNGTG 1 cut(s) 401
AfaI GTAC 2 cut(s) 761, 958
AfiI CCNNNNNNNGG 5 cut(s) 244, 285, 416, 468, 831
AflIII ACRYGT 1 cut(s) 756
AgsI TTSAA 3 cut(s) 425, 604, 625
AhdI GACNNNNNGTC 1 cut(s) 268
AhlI ACTAGT 1 cut(s) 53
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 3 cut(s) 227, 515, 904
AluI AGCT 3 cut(s) 227, 515, 904
Alw21I GWGCWC 2 cut(s) 50, 61
Alw26I GTCTC 3 cut(s) 276, 427, 539
AlwI GGATC 1 cut(s) 638
Ama87I CYCGRG 1 cut(s) 562
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 3 cut(s) 314, 854, 890
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
AspS9I GGNCC 3 cut(s) 407, 502, 727
AsuC2I CCSGG 2 cut(s) 200, 260
AsuHPI GGTGA 2 cut(s) 310, 950
AvaI CYCGRG 1 cut(s) 562
AvaII GGWCC 3 cut(s) 407, 502, 727
AxyI CCTNAGG 1 cut(s) 677
BalI TGGCCA 1 cut(s) 377
BanII GRGCYC 1 cut(s) 571
Bbv12I GWGCWC 2 cut(s) 50, 61
BbvI GCAGC 3 cut(s) 301, 866, 877
BccI CCATC 1 cut(s) 434
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 1 cut(s) 162
BciVI GTATCC 1 cut(s) 606
BclI TGATCA 2 cut(s) 300, 802
BcnI CCSGG 2 cut(s) 200, 260
BcoDI GTCTC 3 cut(s) 276, 427, 539
BcuI ACTAGT 1 cut(s) 53
BfaI CTAG 2 cut(s) 54, 224
BfuI GTATCC 1 cut(s) 606
BglI GCCNNNNNGGC 1 cut(s) 887
BisI GCNGC 5 cut(s) 120, 315, 740, 855, 891
BlsI GCNGC 5 cut(s) 121, 316, 741, 856, 892
Bme1390I CCNGG 3 cut(s) 162, 200, 260
Bme18I GGWCC 3 cut(s) 407, 502, 727
BmeRI GACNNNNNGTC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 562
BmgT120I GGNCC 3 cut(s) 407, 502, 727
BmiI GGNNCC 2 cut(s) 236, 729
BmrFI CCNGG 3 cut(s) 162, 200, 260
BmsI GCATC 3 cut(s) 199, 326, 484
BpuMI CCSGG 2 cut(s) 200, 260
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 3 cut(s) 199, 309, 372
BsaWI WCCGGW 2 cut(s) 609, 926
Bsc4I CCNNNNNNNGG 5 cut(s) 244, 285, 416, 468, 831
Bse1I ACTGG 1 cut(s) 462
Bse21I CCTNAGG 1 cut(s) 677
Bse3DI GCAATG 2 cut(s) 552, 675
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 3 cut(s) 199, 309, 372
BseGI GGATG 2 cut(s) 341, 484
BseLI CCNNNNNNNGG 5 cut(s) 244, 285, 416, 468, 831
BseMI GCAATG 2 cut(s) 552, 675
BseMII CTCAG 4 cut(s) 35, 184, 389, 691
BseNI ACTGG 1 cut(s) 462
BseXI GCAGC 3 cut(s) 301, 866, 877
BsgI GTGCAG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 579
BshFI GGCC 1 cut(s) 377
BsiEI CGRYCG 1 cut(s) 579
BsiHKAI GWGCWC 2 cut(s) 50, 61
BsiHKCI CYCGRG 1 cut(s) 562
BsiSI CCGG 5 cut(s) 199, 260, 279, 610, 927
BslI CCNNNNNNNGG 5 cut(s) 244, 285, 416, 468, 831
BsmAI GTCTC 3 cut(s) 276, 427, 539
BsmBI CGTCTC 1 cut(s) 276
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 377
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 562
Bsp1286I GDGCHC 3 cut(s) 50, 61, 571
Bsp143I GATC 6 cut(s) 73, 300, 547, 576, 643, 802
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 4 cut(s) 120, 245, 740, 960
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 4 cut(s) 36, 183, 390, 690
BspLI GGNNCC 2 cut(s) 236, 729
BspPI GGATC 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 2 cut(s) 552, 675
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 3 cut(s) 199, 309, 372
BssMI GATC 6 cut(s) 73, 300, 547, 576, 643, 802
BssT1I CCWWGG 2 cut(s) 309, 372
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 298, 687
Bst6I CTCTTC 3 cut(s) 36, 182, 778
BstDEI CTNAG 4 cut(s) 44, 170, 398, 677
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 341, 484
BstKTI GATC 6 cut(s) 76, 303, 550, 579, 646, 805
BstMAI GTCTC 3 cut(s) 276, 427, 539
BstMBI GATC 6 cut(s) 73, 300, 547, 576, 643, 802
BstMCI CGRYCG 1 cut(s) 579
BstMWI GCNNNNNNNGC 2 cut(s) 314, 887
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 3 cut(s) 93, 760, 881
BstSCI CCNGG 3 cut(s) 160, 198, 258
BstV1I GCAGC 3 cut(s) 301, 866, 877
Bsu36I CCTNAGG 1 cut(s) 677
BsuI GTATCC 1 cut(s) 606
BsuRI GGCC 1 cut(s) 377
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 2 cut(s) 341, 484
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 6 cut(s) 222, 395, 469, 589, 692, 812
Cfr13I GGNCC 3 cut(s) 407, 502, 727
Csp6I GTAC 2 cut(s) 760, 957
CspCI CAANNNNNGTGG 2 cut(s) 639, 674
CviAII CATG 6 cut(s) 90, 116, 373, 530, 757, 878
CviQI GTAC 2 cut(s) 760, 957
DdeI CTNAG 4 cut(s) 44, 170, 398, 677
DpnI GATC 6 cut(s) 75, 302, 549, 578, 645, 804
DpnII GATC 6 cut(s) 73, 300, 547, 576, 643, 802
DraI TTTAAA 2 cut(s) 496, 874
DraIII CACNNNGTG 1 cut(s) 401
DriI GACNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 3 cut(s) 36, 182, 778
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 3 cut(s) 36, 182, 778
EciI GGCGGA 1 cut(s) 260
Eco130I CCWWGG 2 cut(s) 309, 372
Eco24I GRGCYC 1 cut(s) 571
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 3 cut(s) 407, 502, 727
Eco57I CTGAAG 2 cut(s) 198, 758
Eco81I CCTNAGG 1 cut(s) 677
Eco88I CYCGRG 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 309, 372
EcoT38I GRGCYC 1 cut(s) 571
ErhI CCWWGG 2 cut(s) 309, 372
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 6 cut(s) 93, 119, 376, 533, 760, 881
FatI CATG 6 cut(s) 89, 115, 372, 529, 756, 877
FbaI TGATCA 2 cut(s) 300, 802
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 5 cut(s) 120, 315, 740, 855, 891
FokI GGATG 2 cut(s) 348, 471
FriOI GRGCYC 1 cut(s) 571
Fsp4HI GCNGC 5 cut(s) 120, 315, 740, 855, 891
FspBI CTAG 2 cut(s) 54, 224
GluI GCNGC 5 cut(s) 120, 315, 740, 855, 891
HaeIII GGCC 1 cut(s) 377
HapII CCGG 5 cut(s) 199, 260, 279, 610, 927
Hin1II CATG 6 cut(s) 93, 119, 376, 533, 760, 881
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HindIII AAGCTT 1 cut(s) 902
HinfI GANTC 5 cut(s) 69, 104, 174, 600, 747
HpaII CCGG 5 cut(s) 199, 260, 279, 610, 927
HphI GGTGA 2 cut(s) 310, 950
Hpy166II GTNNAC 6 cut(s) 453, 502, 703, 816, 844, 967
Hpy188I TCNGA 5 cut(s) 45, 173, 648, 693, 802
Hpy188III TCNNGA 3 cut(s) 488, 625, 679
Hpy8I GTNNAC 6 cut(s) 453, 502, 703, 816, 844, 967
HpyAV CCTTC 3 cut(s) 244, 782, 892
HpyCH4III ACNGT 2 cut(s) 298, 687
HpyCH4V TGCA 4 cut(s) 158, 339, 594, 854
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 887
HpyF3I CTNAG 4 cut(s) 44, 170, 398, 677
Hsp92II CATG 6 cut(s) 93, 119, 376, 533, 760, 881
Ksp22I TGATCA 2 cut(s) 300, 802
Kzo9I GATC 6 cut(s) 73, 300, 547, 576, 643, 802
Lsp1109I GCAGC 3 cut(s) 301, 866, 877
LweI GCATC 3 cut(s) 199, 326, 484
MaeI CTAG 2 cut(s) 54, 224
MaeIII GTNAC 1 cut(s) 270
MalI GATC 6 cut(s) 75, 302, 549, 578, 645, 804
MboI GATC 6 cut(s) 73, 300, 547, 576, 643, 802
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 3 cut(s) 50, 61, 571
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 4 cut(s) 108, 425, 639, 942
MluNI TGGCCA 1 cut(s) 377
MlyI GAGTC 2 cut(s) 78, 168
MmeI TCCRAC 1 cut(s) 671
MnlI CCTC 6 cut(s) 398, 438, 462, 492, 686, 779
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MseI TTAA 4 cut(s) 126, 495, 873, 921
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 962
MspI CCGG 5 cut(s) 199, 260, 279, 610, 927
MspR9I CCNGG 3 cut(s) 162, 200, 260
MunI CAATTG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 314, 887
NciI CCSGG 2 cut(s) 200, 260
NcoI CCATGG 1 cut(s) 372
NdeII GATC 6 cut(s) 73, 300, 547, 576, 643, 802
NlaIII CATG 6 cut(s) 93, 119, 376, 533, 760, 881
NlaIV GGNNCC 2 cut(s) 236, 729
NmeAIII GCCGAG 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 270
NspI RCATGY 3 cut(s) 93, 760, 881
PciI ACATGT 1 cut(s) 756
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 104, 600, 747
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 5 cut(s) 121, 316, 741, 856, 892
Ple19I CGATCG 1 cut(s) 579
PleI GAGTC 2 cut(s) 77, 168
PpsI GAGTC 2 cut(s) 77, 168
PscI ACATGT 1 cut(s) 756
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 236, 729
PspPI GGNCC 3 cut(s) 407, 502, 727
PvuI CGATCG 1 cut(s) 579
RsaI GTAC 2 cut(s) 761, 958
RsaNI GTAC 2 cut(s) 760, 957
SaqAI TTAA 4 cut(s) 126, 495, 873, 921
SatI GCNGC 5 cut(s) 120, 315, 740, 855, 891
Sau3AI GATC 6 cut(s) 73, 300, 547, 576, 643, 802
Sau96I GGNCC 3 cut(s) 407, 502, 727
SchI GAGTC 2 cut(s) 78, 168
ScrFI CCNGG 3 cut(s) 162, 200, 260
SduI GDGCHC 3 cut(s) 50, 61, 571
SetI ASST 6 cut(s) 229, 351, 517, 774, 906, 940
SfaNI GCATC 3 cut(s) 199, 326, 484
SinI GGWCC 3 cut(s) 407, 502, 727
SpeI ACTAGT 1 cut(s) 53
Sse9I AATT 4 cut(s) 108, 425, 639, 942
SsiI CCGC 4 cut(s) 120, 245, 740, 960
SspMI CTAG 2 cut(s) 54, 224
StyD4I CCNGG 3 cut(s) 160, 198, 258
StyI CCWWGG 2 cut(s) 309, 372
TaaI ACNGT 2 cut(s) 298, 687
TaqI TCGA 4 cut(s) 67, 72, 102, 750
TasI AATT 4 cut(s) 108, 425, 639, 942
TatI WGTACW 1 cut(s) 759
TauI GCSGC 2 cut(s) 122, 742
TfiI GAWTC 3 cut(s) 104, 600, 747
Tru1I TTAA 4 cut(s) 126, 495, 873, 921
Tru9I TTAA 4 cut(s) 126, 495, 873, 921
TscAI CASTG 6 cut(s) 222, 402, 469, 596, 692, 812
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 3 cut(s) 314, 854, 890
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 2 cut(s) 17, 668
TspRI CASTG 6 cut(s) 222, 402, 469, 596, 692, 812
Van91I CCANNNNNTGG 1 cut(s) 416
VpaK11BI GGWCC 3 cut(s) 407, 502, 727
XceI RCATGY 3 cut(s) 93, 760, 881
XmiI GTMKAC 1 cut(s) 702
XspI CTAG 2 cut(s) 54, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.