Rmu_sc0000301.1_g000011

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000301.1
OG0016497
Physical Location & Seq
Forward (+)
38287 .. 39892
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000301.1_g000011.1.cds

Sequence Viewer

Length: 915 bp
atgaatgctcatcttcttcctttgctctctcttcttcttcttcttattctgagcacaactagtgctcagcttcgagtcgatcattacagaaagacatgcccaaatgtcgaatcaattgtccatgccgcagttaaacagaagtttgagcatacatttacgactgcaccaggcactctcagactcttcttccacgattgtttcgtccggggttgtgatgcttcagtgatactagcttttaggaaccactcggcggagaaggataacccggacgatatgtcactcgccggagacgggtttgacacggtgatcaaagccaaggccgctgttgatagagtggctggatgcaggaacaaggtttcttgtgctgacattcttgccatggccacaagagatgtcgtatcactgagtggaggaccatattatggagttgaattggggagacttgatgggagggtgtccacaaaaaccagtgtgaggaagcatcttcctcatcctgattttaaagtggaccaactgaaagctatgtttgccaaacatggtctctctctaaccgatctcattgctctctcgggggctcatacgatcgggttctcacactgcaaccgattcaaccaccggatacacaacttcaagagcaagaacagaattgatccgacgatgaatgtggattacgcaatgagtctcaggaaacagtgtccgaagaatgtagacccaagaaatgcgattactttggacccaaccacgccacagagattcgataacatgtactacaagaaccttcagcaaggaagaggattgcttacttctgataatcttgaaaacaagaactcagaaaatcgggtacctctaattcgaagcaagagaactactaaaatttctaatgaaatccagaaggaattcccaatttcattatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

304

Amino Acids

34.01

Weight (kDa)

9.51

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016497)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36870
malus_domestica MD15G1108300.v1.1
prunus_persica Prupe.1G460600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304911
rosa_laevigata RLG00000010939
rosa_multiflora Rmu_sc0000301.1_g000011 Rmu_sc0004222.1_g000001
rosa_roxburghii Rroxscaffold_7G00163350
rosa_rugosa Rorug06G0336200
rosa_samantha Rh6AG447500 Rh6BG454000 Rh6CG461000 Rh6DG448000
rosa_wichuraiana Rw6G038960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 841
AccB1I GGYRCC 1 cut(s) 841
AccB7I CCANNNNNTGG 1 cut(s) 422
AccI GTMKAC 1 cut(s) 708
AciI CCGC 3 cut(s) 126, 251, 321
AclWI GGATC 1 cut(s) 644
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 2 cut(s) 873, 896
AcuI CTGAAG 2 cut(s) 204, 764
AdeI CACNNNGTG 1 cut(s) 407
AfaI GTAC 2 cut(s) 767, 843
AfiI CCNNNNNNNGG 4 cut(s) 250, 291, 422, 474
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 4 cut(s) 431, 610, 631, 818
AhdI GACNNNNNGTC 1 cut(s) 274
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 70, 233, 521
AluI AGCT 3 cut(s) 70, 233, 521
Alw21I GWGCWC 2 cut(s) 56, 67
Alw26I GTCTC 4 cut(s) 282, 433, 545, 686
AlwI GGATC 1 cut(s) 644
Ama87I CYCGRG 1 cut(s) 568
AoxI GGCC 2 cut(s) 318, 381
ApoI RAATTY 2 cut(s) 873, 896
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
Asp700I GAANNNNTTC 1 cut(s) 896
Asp718I GGTACC 1 cut(s) 841
AspS9I GGNCC 3 cut(s) 413, 508, 733
AsuC2I CCSGG 2 cut(s) 206, 266
AsuHPI GGTGA 1 cut(s) 316
AsuII TTCGAA 1 cut(s) 853
AvaI CYCGRG 1 cut(s) 568
AvaII GGWCC 3 cut(s) 413, 508, 733
BalI TGGCCA 1 cut(s) 383
BanI GGYRCC 1 cut(s) 841
BanII GRGCYC 1 cut(s) 577
Bbv12I GWGCWC 2 cut(s) 56, 67
BccI CCATC 1 cut(s) 440
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 1 cut(s) 612
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 2 cut(s) 206, 266
BcoDI GTCTC 4 cut(s) 282, 433, 545, 686
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 2 cut(s) 60, 230
BfuI GTATCC 1 cut(s) 612
BisI GCNGC 2 cut(s) 126, 321
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 2 cut(s) 127, 322
Bme1390I CCNGG 3 cut(s) 168, 206, 266
Bme18I GGWCC 3 cut(s) 413, 508, 733
BmeRI GACNNNNNGTC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 568
BmgT120I GGNCC 3 cut(s) 413, 508, 733
BmiI GGNNCC 3 cut(s) 242, 735, 843
BmrFI CCNGG 3 cut(s) 168, 206, 266
BmsI GCATC 3 cut(s) 205, 332, 490
Bpu1102I GCTNAGC 1 cut(s) 66
Bpu14I TTCGAA 1 cut(s) 853
BpuMI CCSGG 2 cut(s) 206, 266
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 3 cut(s) 205, 315, 378
BsaWI WCCGGW 1 cut(s) 615
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 291, 422, 474
Bse1I ACTGG 1 cut(s) 468
Bse3DI GCAATG 2 cut(s) 558, 681
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 3 cut(s) 205, 315, 378
BseGI GGATG 2 cut(s) 347, 490
BseLI CCNNNNNNNGG 4 cut(s) 250, 291, 422, 474
BseMI GCAATG 2 cut(s) 558, 681
BseMII CTCAG 6 cut(s) 41, 80, 190, 395, 697, 843
BseNI ACTGG 1 cut(s) 468
BsgI GTGCAG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 585
BshFI GGCC 2 cut(s) 320, 383
BshNI GGYRCC 1 cut(s) 841
BsiEI CGRYCG 1 cut(s) 585
BsiHKAI GWGCWC 2 cut(s) 56, 67
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 4 cut(s) 205, 266, 285, 616
BslI CCNNNNNNNGG 4 cut(s) 250, 291, 422, 474
BsmAI GTCTC 4 cut(s) 282, 433, 545, 686
BsmBI CGTCTC 1 cut(s) 282
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 320, 383
Bso31I GGTCTC 1 cut(s) 545
BsoBI CYCGRG 1 cut(s) 568
Bsp119I TTCGAA 1 cut(s) 853
Bsp1286I GDGCHC 3 cut(s) 56, 67, 577
Bsp143I GATC 5 cut(s) 79, 306, 553, 582, 649
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 3 cut(s) 126, 251, 321
BspANI GGCC 2 cut(s) 320, 383
BspCNI CTCAG 6 cut(s) 42, 79, 189, 396, 696, 842
BspLI GGNNCC 3 cut(s) 242, 735, 843
BspPI GGATC 1 cut(s) 644
BspT104I TTCGAA 1 cut(s) 853
BspT107I GGYRCC 1 cut(s) 841
BspTNI GGTCTC 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 558, 681
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 3 cut(s) 205, 315, 378
BssMI GATC 5 cut(s) 79, 306, 553, 582, 649
BssT1I CCWWGG 2 cut(s) 315, 378
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 304, 693
Bst6I CTCTTC 3 cut(s) 36, 188, 784
BstBI TTCGAA 1 cut(s) 853
BstDEI CTNAG 6 cut(s) 50, 66, 176, 404, 683, 829
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 347, 490
BstKTI GATC 5 cut(s) 82, 309, 556, 585, 652
BstMAI GTCTC 4 cut(s) 282, 433, 545, 686
BstMBI GATC 5 cut(s) 79, 306, 553, 582, 649
BstMCI CGRYCG 1 cut(s) 585
BstMWI GCNNNNNNNGC 2 cut(s) 320, 527
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 2 cut(s) 99, 766
BstSCI CCNGG 3 cut(s) 166, 204, 264
BsuI GTATCC 1 cut(s) 612
BsuRI GGCC 2 cut(s) 320, 383
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 2 cut(s) 347, 490
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 5 cut(s) 228, 401, 475, 595, 698
Cfr13I GGNCC 3 cut(s) 413, 508, 733
Csp6I GTAC 2 cut(s) 766, 842
CviAII CATG 5 cut(s) 96, 122, 379, 536, 763
CviJI RGCY 8 cut(s) 70, 233, 314, 320, 338, 383, 521, 575
CviKI_1 RGCY 8 cut(s) 70, 233, 314, 320, 338, 383, 521, 575
CviQI GTAC 2 cut(s) 766, 842
DdeI CTNAG 6 cut(s) 50, 66, 176, 404, 683, 829
DpnI GATC 5 cut(s) 81, 308, 555, 584, 651
DpnII GATC 5 cut(s) 79, 306, 553, 582, 649
DraI TTTAAA 1 cut(s) 502
DraIII CACNNNGTG 1 cut(s) 407
DriI GACNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 3 cut(s) 36, 188, 784
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 3 cut(s) 36, 188, 784
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 315, 378
Eco24I GRGCYC 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 545
Eco47I GGWCC 3 cut(s) 413, 508, 733
Eco57I CTGAAG 2 cut(s) 204, 764
Eco88I CYCGRG 1 cut(s) 568
EcoRI GAATTC 1 cut(s) 896
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 315, 378
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 2 cut(s) 315, 378
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 5 cut(s) 99, 125, 382, 539, 766
FatI CATG 5 cut(s) 95, 121, 378, 535, 762
FbaI TGATCA 1 cut(s) 306
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 2 cut(s) 126, 321
FokI GGATG 2 cut(s) 354, 477
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 2 cut(s) 126, 321
FspBI CTAG 2 cut(s) 60, 230
GluI GCNGC 2 cut(s) 126, 321
HaeIII GGCC 2 cut(s) 320, 383
HapII CCGG 4 cut(s) 205, 266, 285, 616
Hin1II CATG 5 cut(s) 99, 125, 382, 539, 766
HinfI GANTC 6 cut(s) 75, 110, 180, 606, 679, 753
HpaII CCGG 4 cut(s) 205, 266, 285, 616
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 3 cut(s) 459, 508, 709
Hpy188I TCNGA 6 cut(s) 51, 179, 654, 699, 808, 832
Hpy188III TCNNGA 5 cut(s) 494, 631, 685, 815, 889
Hpy8I GTNNAC 3 cut(s) 459, 508, 709
Hpy99I CGWCG 1 cut(s) 658
HpyAV CCTTC 3 cut(s) 250, 788, 886
HpyCH4III ACNGT 2 cut(s) 304, 693
HpyCH4V TGCA 3 cut(s) 164, 345, 600
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 527
HpyF3I CTNAG 6 cut(s) 50, 66, 176, 404, 683, 829
Hsp92II CATG 5 cut(s) 99, 125, 382, 539, 766
KpnI GGTACC 1 cut(s) 845
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 5 cut(s) 79, 306, 553, 582, 649
LweI GCATC 3 cut(s) 205, 332, 490
MaeI CTAG 2 cut(s) 60, 230
MaeIII GTNAC 1 cut(s) 276
MalI GATC 5 cut(s) 81, 308, 555, 584, 651
MboI GATC 5 cut(s) 79, 306, 553, 582, 649
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 3 cut(s) 56, 67, 577
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 7 cut(s) 114, 431, 645, 849, 873, 896, 903
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 3 cut(s) 84, 174, 688
MmeI TCCRAC 1 cut(s) 677
MnlI CCTC 6 cut(s) 404, 444, 468, 498, 785, 855
Mox20I TGGCCA 1 cut(s) 383
MroXI GAANNNNTTC 1 cut(s) 896
MscI TGGCCA 1 cut(s) 383
MseI TTAA 2 cut(s) 132, 501
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 4 cut(s) 205, 266, 285, 616
MspR9I CCNGG 3 cut(s) 168, 206, 266
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 320, 527
NciI CCSGG 2 cut(s) 206, 266
NcoI CCATGG 1 cut(s) 378
NdeII GATC 5 cut(s) 79, 306, 553, 582, 649
NlaIII CATG 5 cut(s) 99, 125, 382, 539, 766
NlaIV GGNNCC 3 cut(s) 242, 735, 843
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 276
NspI RCATGY 2 cut(s) 99, 766
NspV TTCGAA 1 cut(s) 853
PciI ACATGT 1 cut(s) 762
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 896
PfeI GAWTC 3 cut(s) 110, 606, 753
PflMI CCANNNNNTGG 1 cut(s) 422
PkrI GCNGC 2 cut(s) 127, 322
Ple19I CGATCG 1 cut(s) 585
PleI GAGTC 3 cut(s) 83, 174, 687
PpsI GAGTC 3 cut(s) 83, 174, 687
PscI ACATGT 1 cut(s) 762
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 3 cut(s) 242, 735, 843
PspPI GGNCC 3 cut(s) 413, 508, 733
PvuI CGATCG 1 cut(s) 585
RsaI GTAC 2 cut(s) 767, 843
RsaNI GTAC 2 cut(s) 766, 842
SaqAI TTAA 2 cut(s) 132, 501
SatI GCNGC 2 cut(s) 126, 321
Sau3AI GATC 5 cut(s) 79, 306, 553, 582, 649
Sau96I GGNCC 3 cut(s) 413, 508, 733
SchI GAGTC 3 cut(s) 84, 174, 688
ScrFI CCNGG 3 cut(s) 168, 206, 266
SduI GDGCHC 3 cut(s) 56, 67, 577
SetI ASST 6 cut(s) 72, 235, 357, 523, 780, 847
SfaNI GCATC 3 cut(s) 205, 332, 490
SfuI TTCGAA 1 cut(s) 853
SinI GGWCC 3 cut(s) 413, 508, 733
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 7 cut(s) 114, 431, 645, 849, 873, 896, 903
SsiI CCGC 3 cut(s) 126, 251, 321
SspMI CTAG 2 cut(s) 60, 230
StyD4I CCNGG 3 cut(s) 166, 204, 264
StyI CCWWGG 2 cut(s) 315, 378
TaaI ACNGT 2 cut(s) 304, 693
TaqI TCGA 5 cut(s) 73, 78, 108, 756, 853
TasI AATT 7 cut(s) 114, 431, 645, 849, 873, 896, 903
TatI WGTACW 1 cut(s) 765
TauI GCSGC 2 cut(s) 128, 323
TfiI GAWTC 3 cut(s) 110, 606, 753
Tru1I TTAA 2 cut(s) 132, 501
Tru9I TTAA 2 cut(s) 132, 501
TscAI CASTG 5 cut(s) 228, 408, 475, 602, 698
TseFI GTSAC 1 cut(s) 276
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 4 cut(s) 17, 674, 897, 897
TspRI CASTG 5 cut(s) 228, 408, 475, 602, 698
Van91I CCANNNNNTGG 1 cut(s) 422
VpaK11BI GGWCC 3 cut(s) 413, 508, 733
XapI RAATTY 2 cut(s) 873, 896
XceI RCATGY 2 cut(s) 99, 766
XmiI GTMKAC 1 cut(s) 708
XmnI GAANNNNTTC 1 cut(s) 896
XspI CTAG 2 cut(s) 60, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.