MD15G1108300.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016497
Physical Location & Seq
Forward (+)
7552935 .. 7555121
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1108300.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGCTTCACATGCATGACACTAACGCAATCAAGAACCTACTGTATTCAACTTTTCAAATGAATTCCAAAAGCACCTTCTATCTTCCTTTACTCTTTCTTCTCCTCCTCCTCAAAAGCACCTTTGCTCAACTTCATGTAGAGCACTACAGAAAATCATGCCCTAATGTTGAATCAATTGTTCATGCTGCAGTCAAGCTGAAGTTTGAGCAGACTTTTGTCACAGCCCCAGCCACTCTCCGGCTCTTCTTCCACGATTGTTTCGTTCAGGGATGCGATGCTTCAATAATGCTAGCGTTTCGGAACAACTCAGCGGAGAAGGATAATTCGGATAACCTTTCACTCGCCGGAGACGGGTTTGACACGGTGATCAAAGCCAAGGCTGCTGTTGATAGAGTGCCTAATTGCAGGAACAAGGTTTCTTGTGCTGACATTCTGGCCTTGGCCACAAGGGATGTCATAAGACTGACTGGGGGACCATTCTACAAAGTTGAATTGGGAAGACTTGATGGGAGGACTTCTACAAAAGCAAGTGTGAGACAACATCTTCCCCATCCTGATTTTAACGTAGAAGAGCTTGATTCATTGTTCGCCAAACACGGTCTCTCTCTAACTGATCTTGTCGCGCTCTCAGGAGCACATACAATTGGATTCTCACATTGCAACAGATTCACTCACCGGATCTACAACTTCAAGAGCAAGAACAGAATCGATCCAACGATGAACGTCGCATATGCAAGGGAGCTCAGAAAAGAGTGTCCCAAAAATGTAGATCCGAGAATTGCAGTTACCATGGACCCACACACGCCGCAGAGATTCGACAATGTGTACTACAAGAACCTTCAGCAAGGGAAAGGGTTGTTCACTTCTGATCAGTCCTTGTTCACTGACACCAAATCAAGAAAAATTGTCAACTTATTCGCAGCGGATGCCGCCGCCTTTGAACGAGCTTTTGTGGCAGCTATGACAAAGCTTGGAAGAGTAGGGATCAAGACCGGAAAGCAGGGTGAGATTAGGCATAATTGCGCTGCTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

346

Amino Acids

38.64

Weight (kDa)

9.39

Isoelectric Point (pI)

26.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 61 - 309 5.5e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016497)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36870
malus_domestica MD15G1108300.v1.1
prunus_persica Prupe.1G460600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304911
rosa_laevigata RLG00000010939
rosa_multiflora Rmu_sc0000301.1_g000011 Rmu_sc0004222.1_g000001
rosa_roxburghii Rroxscaffold_7G00163350
rosa_rugosa Rorug06G0336200
rosa_samantha Rh6AG447500 Rh6BG454000 Rh6CG461000 Rh6DG448000
rosa_wichuraiana Rw6G038960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 623
AciI CCGC 5 cut(s) 311, 806, 923, 930, 933
AclWI GGATC 4 cut(s) 686, 704, 764, 992
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 2 cut(s) 218, 824
AfaI GTAC 1 cut(s) 827
AfiI CCNNNNNNNGG 2 cut(s) 237, 351
AgsI TTSAA 7 cut(s) 48, 56, 170, 282, 491, 691, 941
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 6 cut(s) 196, 574, 742, 947, 959, 970
AluI AGCT 6 cut(s) 196, 574, 742, 947, 959, 970
Alw21I GWGCWC 3 cut(s) 144, 637, 744
Alw26I GTCTC 3 cut(s) 342, 529, 605
AlwI GGATC 4 cut(s) 686, 704, 764, 992
AoxI GGCC 2 cut(s) 435, 441
ApeKI GCWGC 5 cut(s) 185, 380, 920, 956, 1025
ApoI RAATTY 1 cut(s) 61
AspLEI GCGC 2 cut(s) 625, 1025
AspS9I GGNCC 2 cut(s) 473, 793
AsuHPI GGTGA 3 cut(s) 376, 665, 1016
AsuNHI GCTAGC 1 cut(s) 289
AvaII GGWCC 2 cut(s) 473, 793
BalI TGGCCA 1 cut(s) 443
BanII GRGCYC 1 cut(s) 744
BbsI GAAGAC 1 cut(s) 505
Bbv12I GWGCWC 3 cut(s) 144, 637, 744
BbvI GCAGC 5 cut(s) 172, 367, 932, 968, 1012
BccI CCATC 2 cut(s) 500, 558
BclI TGATCA 2 cut(s) 366, 868
BcoDI GTCTC 3 cut(s) 342, 529, 605
BfaI CTAG 2 cut(s) 290, 1036
BfmI CTRYAG 2 cut(s) 145, 186
BisI GCNGC 8 cut(s) 186, 381, 806, 921, 930, 933, 957, 1026
BlsI GCNGC 8 cut(s) 187, 382, 807, 922, 931, 934, 958, 1027
Bme18I GGWCC 2 cut(s) 473, 793
BmgT120I GGNCC 2 cut(s) 473, 793
BmiI GGNNCC 2 cut(s) 474, 795
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 3 cut(s) 260, 265, 916
BmtI GCTAGC 1 cut(s) 293
BmuI ACTGGG 1 cut(s) 477
BoxI GACNNNNGTC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 505
Bsa29I ATCGAT 1 cut(s) 708
BsaI GGTCTC 1 cut(s) 605
BsaJI CCNNGG 3 cut(s) 375, 438, 789
BsaWI WCCGGW 2 cut(s) 675, 992
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 351
Bse1I ACTGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 655
BseCI ATCGAT 1 cut(s) 708
BseDI CCNNGG 3 cut(s) 375, 438, 789
BseGI GGATG 4 cut(s) 275, 457, 550, 931
BseLI CCNNNNNNNGG 2 cut(s) 237, 351
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 3 cut(s) 321, 642, 757
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 3 cut(s) 92, 95, 98
BseXI GCAGC 5 cut(s) 172, 367, 932, 968, 1012
BseYI CCCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 623
BshFI GGCC 2 cut(s) 437, 443
BshVI ATCGAT 1 cut(s) 708
BsiHKAI GWGCWC 3 cut(s) 144, 637, 744
BsiSI CCGG 4 cut(s) 238, 345, 676, 993
BslFI GGGAC 2 cut(s) 486, 741
BslI CCNNNNNNNGG 2 cut(s) 237, 351
BsmAI GTCTC 3 cut(s) 342, 529, 605
BsmBI CGTCTC 1 cut(s) 342
BsmFI GGGAC 2 cut(s) 486, 741
BsnI GGCC 2 cut(s) 437, 443
Bso31I GGTCTC 1 cut(s) 605
Bsp1286I GDGCHC 3 cut(s) 144, 637, 744
Bsp143I GATC 7 cut(s) 366, 613, 678, 709, 769, 868, 984
Bsp19I CCATGG 1 cut(s) 789
BspACI CCGC 5 cut(s) 311, 806, 923, 930, 933
BspANI GGCC 2 cut(s) 437, 443
BspCNI CTCAG 3 cut(s) 320, 641, 756
BspDI ATCGAT 1 cut(s) 708
BspFNI CGCG 1 cut(s) 623
BspLI GGNNCC 2 cut(s) 474, 795
BspMAI CTGCAG 1 cut(s) 190
BspOI GCTAGC 1 cut(s) 293
BspPI GGATC 4 cut(s) 686, 704, 764, 992
BspQI GCTCTTC 2 cut(s) 248, 564
BspTNI GGTCTC 1 cut(s) 605
BsrDI GCAATG 1 cut(s) 655
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 3 cut(s) 375, 438, 789
BssMI GATC 7 cut(s) 366, 613, 678, 709, 769, 868, 984
BssT1I CCWWGG 3 cut(s) 375, 438, 789
Bst4CI ACNGT 3 cut(s) 42, 364, 599
Bst6I CTCTTC 3 cut(s) 248, 564, 970
BstAPI GCANNNNNTGC 1 cut(s) 926
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 3 cut(s) 307, 628, 743
BstDSI CCRYGG 1 cut(s) 789
BstF5I GGATG 4 cut(s) 275, 457, 550, 931
BstFNI CGCG 1 cut(s) 623
BstHHI GCGC 2 cut(s) 625, 1025
BstKTI GATC 7 cut(s) 369, 616, 681, 712, 772, 871, 987
BstMAI GTCTC 3 cut(s) 342, 529, 605
BstMBI GATC 7 cut(s) 366, 613, 678, 709, 769, 868, 984
BstMWI GCNNNNNNNGC 5 cut(s) 10, 380, 926, 929, 953
BstNSI RCATGY 1 cut(s) 13
BstPAI GACNNNNGTC 1 cut(s) 215
BstSFI CTRYAG 2 cut(s) 145, 186
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 5 cut(s) 172, 367, 932, 968, 1012
BstV2I GAAGAC 1 cut(s) 505
BstX2I RGATCY 2 cut(s) 678, 769
BstYI RGATCY 2 cut(s) 678, 769
Bsu15I ATCGAT 1 cut(s) 708
BsuRI GGCC 2 cut(s) 437, 443
BsuTUI ATCGAT 1 cut(s) 708
BtgI CCRYGG 1 cut(s) 789
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 4 cut(s) 275, 457, 550, 931
BtsIMutI CAGTG 1 cut(s) 882
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 2 cut(s) 625, 1025
Cfr13I GGNCC 2 cut(s) 473, 793
ClaI ATCGAT 1 cut(s) 708
Csp6I GTAC 1 cut(s) 826
CviAII CATG 6 cut(s) 10, 14, 134, 156, 182, 790
CviQI GTAC 1 cut(s) 826
DdeI CTNAG 3 cut(s) 307, 628, 743
DpnI GATC 7 cut(s) 368, 615, 680, 711, 771, 870, 986
DpnII GATC 7 cut(s) 366, 613, 678, 709, 769, 868, 984
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 3 cut(s) 248, 564, 970
EarI CTCTTC 3 cut(s) 248, 564, 970
Ecl136II GAGCTC 1 cut(s) 742
Eco130I CCWWGG 3 cut(s) 375, 438, 789
Eco24I GRGCYC 1 cut(s) 744
Eco31I GGTCTC 1 cut(s) 605
Eco47I GGWCC 2 cut(s) 473, 793
Eco53kI GAGCTC 1 cut(s) 742
Eco57I CTGAAG 2 cut(s) 218, 824
EcoICRI GAGCTC 1 cut(s) 742
EcoRI GAATTC 1 cut(s) 61
EcoT14I CCWWGG 3 cut(s) 375, 438, 789
EcoT22I ATGCAT 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 744
ErhI CCWWGG 3 cut(s) 375, 438, 789
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 6 cut(s) 13, 17, 137, 159, 185, 793
FaqI GGGAC 2 cut(s) 486, 741
FatI CATG 6 cut(s) 9, 13, 133, 155, 181, 789
FauNDI CATATG 1 cut(s) 730
FbaI TGATCA 2 cut(s) 366, 868
Fnu4HI GCNGC 8 cut(s) 186, 381, 806, 921, 930, 933, 957, 1026
FokI GGATG 4 cut(s) 282, 464, 537, 938
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 8 cut(s) 186, 381, 806, 921, 930, 933, 957, 1026
FspBI CTAG 2 cut(s) 290, 1036
GlaI GCGC 2 cut(s) 624, 1024
GluI GCNGC 8 cut(s) 186, 381, 806, 921, 930, 933, 957, 1026
GsaI CCCAGC 1 cut(s) 230
HaeIII GGCC 2 cut(s) 437, 443
HapII CCGG 4 cut(s) 238, 345, 676, 993
HhaI GCGC 2 cut(s) 625, 1025
Hin1II CATG 6 cut(s) 13, 17, 137, 159, 185, 793
Hin6I GCGC 2 cut(s) 623, 1023
HinP1I GCGC 2 cut(s) 623, 1023
HincII GTYRAC 1 cut(s) 910
HindII GTYRAC 1 cut(s) 910
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 6 cut(s) 170, 578, 648, 666, 705, 813
HpaII CCGG 4 cut(s) 238, 345, 676, 993
HphI GGTGA 3 cut(s) 376, 665, 1016
Hpy166II GTNNAC 5 cut(s) 826, 861, 882, 910, 1033
Hpy188I TCNGA 5 cut(s) 300, 328, 746, 774, 868
Hpy188III TCNNGA 6 cut(s) 31, 554, 630, 691, 897, 988
Hpy8I GTNNAC 5 cut(s) 826, 861, 882, 910, 1033
Hpy99I CGWCG 1 cut(s) 728
HpyAV CCTTC 3 cut(s) 85, 310, 848
HpyCH4III ACNGT 3 cut(s) 42, 364, 599
HpyCH4IV ACGT 2 cut(s) 564, 723
HpyCH4V TGCA 6 cut(s) 13, 188, 405, 660, 734, 782
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 380, 926, 929, 953
HpyF3I CTNAG 3 cut(s) 307, 628, 743
HpySE526I ACGT 2 cut(s) 564, 723
Hsp92II CATG 6 cut(s) 13, 17, 137, 159, 185, 793
HspAI GCGC 2 cut(s) 623, 1023
Ksp22I TGATCA 2 cut(s) 366, 868
Kzo9I GATC 7 cut(s) 366, 613, 678, 709, 769, 868, 984
LguI GCTCTTC 2 cut(s) 248, 564
LmnI GCTCC 2 cut(s) 632, 739
Lsp1109I GCAGC 5 cut(s) 172, 367, 932, 968, 1012
LweI GCATC 3 cut(s) 260, 265, 916
MaeI CTAG 2 cut(s) 290, 1036
MaeII ACGT 2 cut(s) 564, 723
MaeIII GTNAC 2 cut(s) 217, 784
MalI GATC 7 cut(s) 368, 615, 680, 711, 771, 870, 986
MboI GATC 7 cut(s) 366, 613, 678, 709, 769, 868, 984
MboII GAAGA 8 cut(s) 74, 89, 235, 238, 510, 536, 581, 987
MfeI CAATTG 2 cut(s) 174, 642
MflI RGATCY 2 cut(s) 678, 769
MhlI GDGCHC 3 cut(s) 144, 637, 744
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 9 cut(s) 61, 174, 322, 400, 491, 642, 777, 903, 1018
MluNI TGGCCA 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 737
MnlI CCTC 4 cut(s) 113, 116, 119, 504
Mox20I TGGCCA 1 cut(s) 443
Mph1103I ATGCAT 1 cut(s) 15
MscI TGGCCA 1 cut(s) 443
MseI TTAA 1 cut(s) 561
MslI CAYNNNNRTG 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 443
MspA1I CMGCKG 2 cut(s) 311, 923
MspI CCGG 4 cut(s) 238, 345, 676, 993
MunI CAATTG 2 cut(s) 174, 642
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 5 cut(s) 10, 380, 926, 929, 953
NcoI CCATGG 1 cut(s) 789
NdeI CATATG 1 cut(s) 730
NdeII GATC 7 cut(s) 366, 613, 678, 709, 769, 868, 984
NheI GCTAGC 1 cut(s) 289
NlaIII CATG 6 cut(s) 13, 17, 137, 159, 185, 793
NlaIV GGNNCC 2 cut(s) 474, 795
NmuCI GTSAC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 15
NspI RCATGY 1 cut(s) 13
PciSI GCTCTTC 2 cut(s) 248, 564
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 6 cut(s) 170, 578, 648, 666, 705, 813
PkrI GCNGC 8 cut(s) 187, 382, 807, 922, 931, 934, 958, 1027
PshAI GACNNNNGTC 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 744
PspFI CCCAGC 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 474, 795
PspPI GGNCC 2 cut(s) 473, 793
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 2 cut(s) 678, 769
RsaI GTAC 1 cut(s) 827
RsaNI GTAC 1 cut(s) 826
RseI CAYNNNNRTG 1 cut(s) 12
SacI GAGCTC 1 cut(s) 744
SapI GCTCTTC 2 cut(s) 248, 564
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 8 cut(s) 186, 381, 806, 921, 930, 933, 957, 1026
Sau3AI GATC 7 cut(s) 366, 613, 678, 709, 769, 868, 984
Sau96I GGNCC 2 cut(s) 473, 793
SduI GDGCHC 3 cut(s) 144, 637, 744
SfaNI GCATC 3 cut(s) 260, 265, 916
SfcI CTRYAG 2 cut(s) 145, 186
SinI GGWCC 2 cut(s) 473, 793
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 9 cut(s) 61, 174, 322, 400, 491, 642, 777, 903, 1018
SsiI CCGC 5 cut(s) 311, 806, 923, 930, 933
SspMI CTAG 2 cut(s) 290, 1036
SstI GAGCTC 1 cut(s) 744
StyI CCWWGG 3 cut(s) 375, 438, 789
TaaI ACNGT 3 cut(s) 42, 364, 599
TaiI ACGT 2 cut(s) 567, 726
TaqI TCGA 2 cut(s) 708, 816
TasI AATT 9 cut(s) 61, 174, 322, 400, 491, 642, 777, 903, 1018
TatI WGTACW 1 cut(s) 825
TauI GCSGC 3 cut(s) 808, 932, 935
TfiI GAWTC 6 cut(s) 170, 578, 648, 666, 705, 813
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 1 cut(s) 889
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 5 cut(s) 185, 380, 920, 956, 1025
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 5 cut(s) 74, 122, 170, 570, 734
TspRI CASTG 1 cut(s) 889
VpaK11BI GGWCC 2 cut(s) 473, 793
XapI RAATTY 1 cut(s) 61
XceI RCATGY 1 cut(s) 13
XspI CTAG 2 cut(s) 290, 1036
Zsp2I ATGCAT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.