Rroxscaffold_7G00163350

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016497
Physical Location & Seq
Forward (+)
5634066 .. 5635921
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163350.1

Sequence Viewer

Length: 990 bp
ATGAATGCTCATCTTCTTCCTTTGCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGAGCACAACTAGTGCTCAACTTCGAGTCAATCATTACAGAAACACATGCCCAAATGTCGAATCAATTGTCCATGCCGCAGTTAAACAGAAATTTGAGCAGACATTTACGACTGCACCAGGCACTCTCAGACTCTTCTTCCACGATTGCTTTGTCCGGGGTTGTGATGCTTCAGTGATACTAGCTTTTAGGAACCACTCAGCGGAGAAGGATAACCCGGACGATATGTCACTCGCCGGAGACGGGTTTGACACGGTGATCAAAGCCAAGGCTGCTGTTGATAGAGTGGCTGGATGCAGGAATAAGGTTTCTTGTGCTGACATTCTTGCCATGGCCACAAGAGATGTCGTATCACTGAGTGGAGGACCATATTATGGAGTTGAATTGGGGAGACTTGATGGGAGGGTGTCCACAAAAAGCAGTGTGAGGAAGCATCTTCCTCATCCTGATTTGAAAGTGGAACAACTGAAAGCTATGTTTGCCAAACATGGTCTCTCTCTAACCGATCTCGTTGCTCTCTCGGGCGCTCATACGATCGGGTTCTCACACTGCAACCGATTCAACCACCGGATACACAACTTCAAGAGCAAGAACAGAATTGATCCGACGATGAATGTGGATTACGCAATGAGTCTCAGGAAACAGTGTCCGAAGAATGTGGACCCAAGAAATGCGATAACTTTGGACCCAACCACGCCGCAGAGATTCGATAATATGTACTACAAGAACCTTCAGCAAGGAAGAGGATTGCTTACTTCTGATCAGTGTTTGTTTACTGACACCAGAACAAGGCACATTGTCAACTTCTTTGCAGCAAACAACACGGCCTTTAAACATGCCTTCGTGGCTGCTATTACAAAGCTTGGTAGAGTTGGGGTTAAGACCGGAAAGCAGGGTGAAATTAGACGGGATTGTACCGCTGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

329

Amino Acids

36.49

Weight (kDa)

9.62

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 293 2.9e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016497)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36870
malus_domestica MD15G1108300.v1.1
prunus_persica Prupe.1G460600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304911
rosa_laevigata RLG00000010939
rosa_multiflora Rmu_sc0000301.1_g000011 Rmu_sc0004222.1_g000001
rosa_roxburghii Rroxscaffold_7G00163350
rosa_rugosa Rorug06G0336200
rosa_samantha Rh6AG447500 Rh6BG454000 Rh6CG461000 Rh6DG448000
rosa_wichuraiana Rw6G038960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 434
AciI CCGC 4 cut(s) 138, 263, 758, 978
AclWI GGATC 1 cut(s) 656
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 2 cut(s) 216, 776
AdeI CACNNNGTG 1 cut(s) 419
AfaI GTAC 2 cut(s) 779, 976
AfiI CCNNNNNNNGG 4 cut(s) 262, 303, 434, 849
AgsI TTSAA 4 cut(s) 443, 514, 622, 643
AhdI GACNNNNNGTC 1 cut(s) 286
AhlI ACTAGT 1 cut(s) 71
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 3 cut(s) 245, 533, 922
AluI AGCT 3 cut(s) 245, 533, 922
Alw21I GWGCWC 2 cut(s) 68, 79
Alw26I GTCTC 4 cut(s) 294, 445, 557, 698
AlwI GGATC 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 580
AoxI GGCC 2 cut(s) 393, 885
ApeKI GCWGC 3 cut(s) 332, 872, 908
ApoI RAATTY 1 cut(s) 152
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AspLEI GCGC 1 cut(s) 587
AspS9I GGNCC 3 cut(s) 425, 721, 745
AsuC2I CCSGG 2 cut(s) 218, 278
AsuHPI GGTGA 2 cut(s) 328, 968
AvaI CYCGRG 1 cut(s) 580
AvaII GGWCC 3 cut(s) 425, 721, 745
BalI TGGCCA 1 cut(s) 395
Bbv12I GWGCWC 2 cut(s) 68, 79
BbvI GCAGC 3 cut(s) 319, 884, 895
BccI CCATC 1 cut(s) 452
BceAI ACGGC 1 cut(s) 900
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciT130I CCWGG 1 cut(s) 180
BciVI GTATCC 1 cut(s) 624
BclI TGATCA 2 cut(s) 318, 820
BcnI CCSGG 2 cut(s) 218, 278
BcoDI GTCTC 4 cut(s) 294, 445, 557, 698
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 2 cut(s) 72, 242
BfoI RGCGCY 1 cut(s) 588
BfuI GTATCC 1 cut(s) 624
BglI GCCNNNNNGGC 1 cut(s) 905
BisI GCNGC 5 cut(s) 138, 333, 758, 873, 909
BlsI GCNGC 5 cut(s) 139, 334, 759, 874, 910
Bme1390I CCNGG 3 cut(s) 180, 218, 278
Bme18I GGWCC 3 cut(s) 425, 721, 745
BmeRI GACNNNNNGTC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 580
BmgT120I GGNCC 3 cut(s) 425, 721, 745
BmiI GGNNCC 3 cut(s) 254, 723, 747
BmrFI CCNGG 3 cut(s) 180, 218, 278
BmsI GCATC 3 cut(s) 217, 344, 502
BpuMI CCSGG 2 cut(s) 218, 278
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 3 cut(s) 217, 327, 390
BsaWI WCCGGW 2 cut(s) 627, 944
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 303, 434, 849
Bse3DI GCAATG 1 cut(s) 693
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 3 cut(s) 217, 327, 390
BseGI GGATG 2 cut(s) 359, 502
BseLI CCNNNNNNNGG 4 cut(s) 262, 303, 434, 849
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 5 cut(s) 53, 202, 273, 407, 709
BseXI GCAGC 3 cut(s) 319, 884, 895
BsgI GTGCAG 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 597
BshFI GGCC 2 cut(s) 395, 887
BsiEI CGRYCG 1 cut(s) 597
BsiHKAI GWGCWC 2 cut(s) 68, 79
BsiHKCI CYCGRG 1 cut(s) 580
BsiSI CCGG 5 cut(s) 217, 278, 297, 628, 945
BslI CCNNNNNNNGG 4 cut(s) 262, 303, 434, 849
BsmAI GTCTC 4 cut(s) 294, 445, 557, 698
BsmBI CGTCTC 1 cut(s) 294
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 395, 887
Bso31I GGTCTC 1 cut(s) 557
BsoBI CYCGRG 1 cut(s) 580
Bsp1286I GDGCHC 2 cut(s) 68, 79
Bsp143I GATC 5 cut(s) 318, 565, 594, 661, 820
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 4 cut(s) 138, 263, 758, 978
BspANI GGCC 2 cut(s) 395, 887
BspCNI CTCAG 5 cut(s) 54, 201, 272, 408, 708
BspLI GGNNCC 3 cut(s) 254, 723, 747
BspPI GGATC 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 693
BssECI CCNNGG 3 cut(s) 217, 327, 390
BssMI GATC 5 cut(s) 318, 565, 594, 661, 820
BssT1I CCWWGG 2 cut(s) 327, 390
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 316, 705
Bst6I CTCTTC 3 cut(s) 36, 200, 796
BstDEI CTNAG 5 cut(s) 62, 188, 259, 416, 695
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 359, 502
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 5 cut(s) 321, 568, 597, 664, 823
BstMAI GTCTC 4 cut(s) 294, 445, 557, 698
BstMBI GATC 5 cut(s) 318, 565, 594, 661, 820
BstMCI CGRYCG 1 cut(s) 597
BstMWI GCNNNNNNNGC 3 cut(s) 332, 539, 905
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 2 cut(s) 111, 899
BstSCI CCNGG 3 cut(s) 178, 216, 276
BstV1I GCAGC 3 cut(s) 319, 884, 895
BsuI GTATCC 1 cut(s) 624
BsuRI GGCC 2 cut(s) 395, 887
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 359, 502
BtsI GCAGTG 2 cut(s) 487, 607
BtsIMutI CAGTG 6 cut(s) 240, 413, 487, 607, 710, 830
CfoI GCGC 1 cut(s) 587
Cfr13I GGNCC 3 cut(s) 425, 721, 745
Csp6I GTAC 2 cut(s) 778, 975
CviAII CATG 5 cut(s) 108, 134, 391, 548, 896
CviJI RGCY 9 cut(s) 245, 326, 332, 350, 395, 533, 887, 908, 922
CviKI_1 RGCY 9 cut(s) 245, 326, 332, 350, 395, 533, 887, 908, 922
CviQI GTAC 2 cut(s) 778, 975
DdeI CTNAG 5 cut(s) 62, 188, 259, 416, 695
DpnI GATC 5 cut(s) 320, 567, 596, 663, 822
DpnII GATC 5 cut(s) 318, 565, 594, 661, 820
DraI TTTAAA 1 cut(s) 892
DraIII CACNNNGTG 1 cut(s) 419
DriI GACNNNNNGTC 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 3 cut(s) 36, 200, 796
Eam1105I GACNNNNNGTC 1 cut(s) 286
EarI CTCTTC 3 cut(s) 36, 200, 796
Eco130I CCWWGG 2 cut(s) 327, 390
Eco31I GGTCTC 1 cut(s) 557
Eco47I GGWCC 3 cut(s) 425, 721, 745
Eco57I CTGAAG 2 cut(s) 216, 776
Eco88I CYCGRG 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 2 cut(s) 327, 390
ErhI CCWWGG 2 cut(s) 327, 390
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 5 cut(s) 111, 137, 394, 551, 899
FatI CATG 5 cut(s) 107, 133, 390, 547, 895
FbaI TGATCA 2 cut(s) 318, 820
Fnu4HI GCNGC 5 cut(s) 138, 333, 758, 873, 909
FokI GGATG 2 cut(s) 366, 489
Fsp4HI GCNGC 5 cut(s) 138, 333, 758, 873, 909
FspBI CTAG 2 cut(s) 72, 242
GlaI GCGC 1 cut(s) 586
GluI GCNGC 5 cut(s) 138, 333, 758, 873, 909
HaeII RGCGCY 1 cut(s) 588
HaeIII GGCC 2 cut(s) 395, 887
HapII CCGG 5 cut(s) 217, 278, 297, 628, 945
HhaI GCGC 1 cut(s) 587
Hin1II CATG 5 cut(s) 111, 137, 394, 551, 899
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 6 cut(s) 87, 122, 192, 618, 691, 765
HpaII CCGG 5 cut(s) 217, 278, 297, 628, 945
HphI GGTGA 2 cut(s) 328, 968
Hpy166II GTNNAC 5 cut(s) 471, 721, 834, 862, 985
Hpy188I TCNGA 5 cut(s) 63, 191, 666, 711, 820
Hpy188III TCNNGA 3 cut(s) 506, 643, 697
Hpy8I GTNNAC 5 cut(s) 471, 721, 834, 862, 985
Hpy99I CGWCG 1 cut(s) 670
HpyAV CCTTC 3 cut(s) 262, 800, 910
HpyCH4III ACNGT 2 cut(s) 316, 705
HpyCH4V TGCA 4 cut(s) 176, 357, 612, 872
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 539, 905
HpyF3I CTNAG 5 cut(s) 62, 188, 259, 416, 695
Hsp92II CATG 5 cut(s) 111, 137, 394, 551, 899
HspAI GCGC 1 cut(s) 585
Ksp22I TGATCA 2 cut(s) 318, 820
Kzo9I GATC 5 cut(s) 318, 565, 594, 661, 820
Lsp1109I GCAGC 3 cut(s) 319, 884, 895
LweI GCATC 3 cut(s) 217, 344, 502
MaeI CTAG 2 cut(s) 72, 242
MaeIII GTNAC 1 cut(s) 288
MalI GATC 5 cut(s) 320, 567, 596, 663, 822
MboI GATC 5 cut(s) 318, 565, 594, 661, 820
MfeI CAATTG 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 68, 79
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 5 cut(s) 126, 152, 443, 657, 960
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 3 cut(s) 96, 186, 700
MmeI TCCRAC 1 cut(s) 689
MnlI CCTC 5 cut(s) 416, 456, 480, 510, 797
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 3 cut(s) 144, 891, 939
Msp20I TGGCCA 1 cut(s) 395
MspA1I CMGCKG 2 cut(s) 263, 980
MspI CCGG 5 cut(s) 217, 278, 297, 628, 945
MspR9I CCNGG 3 cut(s) 180, 218, 278
MunI CAATTG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 332, 539, 905
NciI CCSGG 2 cut(s) 218, 278
NcoI CCATGG 1 cut(s) 390
NdeII GATC 5 cut(s) 318, 565, 594, 661, 820
NlaIII CATG 5 cut(s) 111, 137, 394, 551, 899
NlaIV GGNNCC 3 cut(s) 254, 723, 747
NmuCI GTSAC 1 cut(s) 288
NspI RCATGY 2 cut(s) 111, 899
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 122, 618, 765
PflMI CCANNNNNTGG 1 cut(s) 434
PkrI GCNGC 5 cut(s) 139, 334, 759, 874, 910
Ple19I CGATCG 1 cut(s) 597
PleI GAGTC 3 cut(s) 95, 186, 699
PpsI GAGTC 3 cut(s) 95, 186, 699
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 3 cut(s) 254, 723, 747
PspPI GGNCC 3 cut(s) 425, 721, 745
PvuI CGATCG 1 cut(s) 597
RsaI GTAC 2 cut(s) 779, 976
RsaNI GTAC 2 cut(s) 778, 975
SaqAI TTAA 3 cut(s) 144, 891, 939
SatI GCNGC 5 cut(s) 138, 333, 758, 873, 909
Sau3AI GATC 5 cut(s) 318, 565, 594, 661, 820
Sau96I GGNCC 3 cut(s) 425, 721, 745
SchI GAGTC 3 cut(s) 96, 186, 700
ScrFI CCNGG 3 cut(s) 180, 218, 278
SduI GDGCHC 2 cut(s) 68, 79
SetI ASST 5 cut(s) 247, 369, 535, 792, 924
SfaNI GCATC 3 cut(s) 217, 344, 502
SinI GGWCC 3 cut(s) 425, 721, 745
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 5 cut(s) 126, 152, 443, 657, 960
SsiI CCGC 4 cut(s) 138, 263, 758, 978
SspMI CTAG 2 cut(s) 72, 242
StyD4I CCNGG 3 cut(s) 178, 216, 276
StyI CCWWGG 2 cut(s) 327, 390
TaaI ACNGT 2 cut(s) 316, 705
TaqI TCGA 3 cut(s) 85, 120, 768
TasI AATT 5 cut(s) 126, 152, 443, 657, 960
TatI WGTACW 1 cut(s) 777
TauI GCSGC 2 cut(s) 140, 760
TfiI GAWTC 3 cut(s) 122, 618, 765
Tru1I TTAA 3 cut(s) 144, 891, 939
Tru9I TTAA 3 cut(s) 144, 891, 939
TscAI CASTG 6 cut(s) 240, 420, 487, 614, 710, 830
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 3 cut(s) 332, 872, 908
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 2 cut(s) 17, 686
TspRI CASTG 6 cut(s) 240, 420, 487, 614, 710, 830
Van91I CCANNNNNTGG 1 cut(s) 434
VpaK11BI GGWCC 3 cut(s) 425, 721, 745
XapI RAATTY 1 cut(s) 152
XceI RCATGY 2 cut(s) 111, 899
XspI CTAG 2 cut(s) 72, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.