Prupe.1G460600_v2.0.a1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016497
Physical Location & Seq
Forward (+)
38515112 .. 38517406
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G460600.1

Sequence Viewer

Length: 984 bp
ATGAATGTTCAAAGCCTTTTCTCTCTTCCTTTACTCTTTCTTCTTCTTGTCCTCTTGAACTCAGCTCATGCTCAGCTTCATGTAGAACATTACAGAAGCTCATGCCCAAATGTTGAAGCAATTGTGCATGCTGCAGTCAAACAGAAGTTTGAGCAGACATTTGTGACAGCTCCAGCCACTCTGAGGCTCTTCTTCCATGATTGTTTCATCCGGGGATGTGATGCTTCAATAATGCTAGCTTTTCGGAACAATTCAGCAGAGAAGGACAACTCCGATAACCTTTCGCTCGCTGGAGACGGGTTTGATACCGTGATCAAAGCCAAGGCTGCTGTTGATAGAGTGCCCCAGTGCAGGAACAAGGTTTCTTGTGCTGACATTCTGGCCTTGGCCACAAGGGATGTCGTAAGACTGACTGGGGGACCATATTACAGAGTTGAATTGGGAAGACTTGATGGGAGGACTTCTACAAAAGCCAGTGTGAGACAACATCTTCCTCATCCTGATTTTAGGTTAGACCAGCTGAATTCGATGTTCGCCTCCCACGGTCTCTCTCTAACCGATCTCATTGCACTCTCAGGTGCACATACAATTGGATTCGCGCACTGCAACAAATTCACTCACCGGATATACAGTTTCAAAAGCCAGAACAGAATTGATCCAACGATGAACTTGGCATATGCAAGGCATCTCAAACAAGAGTGTCCAGCAAATGTAGACCCCAGAATTGCTGTTGACATGGACCCAACCACACCCCAAAAGTTCGACAATGTCTACTACAAGAACCTGCAGCAAGGAAAAGGGTTGTTTACTTCTGATCAGTCTTTGTTCACTGACGCCAGATCAAGAAAAATTGTCAACTTGTTTGCAGCAGACGCCGCCGCTTTCGAACGGGCTTTTGTGGCTGCCATGACAAAGCTTGGAAGATTTGGAGTTAAGAATGGAAAGCAGGGTGAAATTAGGCATGATTGTGCTGCTGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

328

Amino Acids

36.32

Weight (kDa)

9.18

Isoelectric Point (pI)

30.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016497)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36870
malus_domestica MD15G1108300.v1.1
prunus_persica Prupe.1G460600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304911
rosa_laevigata RLG00000010939
rosa_multiflora Rmu_sc0000301.1_g000011 Rmu_sc0004222.1_g000001
rosa_roxburghii Rroxscaffold_7G00163350
rosa_rugosa Rorug06G0336200
rosa_samantha Rh6AG447500 Rh6BG454000 Rh6CG461000 Rh6DG448000
rosa_wichuraiana Rw6G038960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 792
AccI GTMKAC 2 cut(s) 714, 771
AccII CGCG 1 cut(s) 599
AciI CCGC 2 cut(s) 876, 879
AclWI GGATC 1 cut(s) 650
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 2 cut(s) 523, 611
AcyI GRCGYC 2 cut(s) 834, 873
AfiI CCNNNNNNNGG 2 cut(s) 183, 351
AgsI TTSAA 6 cut(s) 11, 58, 116, 228, 437, 637
AluBI AGCT 7 cut(s) 65, 76, 99, 170, 239, 520, 916
AluI AGCT 7 cut(s) 65, 76, 99, 170, 239, 520, 916
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 3 cut(s) 288, 475, 551
Alw44I GTGCAC 1 cut(s) 579
AlwI GGATC 1 cut(s) 650
AoxI GGCC 2 cut(s) 381, 387
ApaLI GTGCAC 1 cut(s) 579
ApeKI GCWGC 6 cut(s) 131, 326, 787, 866, 902, 971
ApoI RAATTY 2 cut(s) 523, 611
AspLEI GCGC 1 cut(s) 601
AspS9I GGNCC 2 cut(s) 419, 739
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 611, 962
AsuII TTCGAA 1 cut(s) 885
AsuNHI GCTAGC 1 cut(s) 235
AvaII GGWCC 2 cut(s) 419, 739
BaeGI GKGCMC 2 cut(s) 345, 583
BalI TGGCCA 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 6 cut(s) 118, 313, 799, 878, 889, 958
BccI CCATC 1 cut(s) 446
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BclI TGATCA 2 cut(s) 312, 814
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 3 cut(s) 288, 475, 551
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 2 cut(s) 132, 785
BfuAI ACCTGC 1 cut(s) 792
BisI GCNGC 8 cut(s) 132, 327, 788, 867, 876, 879, 903, 972
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 8 cut(s) 133, 328, 789, 868, 877, 880, 904, 973
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 2 cut(s) 419, 739
BmgT120I GGNCC 2 cut(s) 419, 739
BmiI GGNNCC 2 cut(s) 420, 741
BmrFI CCNGG 1 cut(s) 212
BmrI ACTGGG 2 cut(s) 340, 423
BmsI GCATC 2 cut(s) 211, 694
BmtI GCTAGC 1 cut(s) 239
BmuI ACTGGG 2 cut(s) 340, 423
BpiI GAAGAC 1 cut(s) 451
BpmI CTGGAG 2 cut(s) 156, 312
Bpu1102I GCTNAGC 1 cut(s) 72
Bpu14I TTCGAA 1 cut(s) 885
BpuMI CCSGG 1 cut(s) 212
BsaHI GRCGYC 2 cut(s) 834, 873
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 4 cut(s) 211, 321, 384, 541
BsaWI WCCGGW 1 cut(s) 621
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 351
Bse1I ACTGG 3 cut(s) 346, 418, 474
Bse3DI GCAATG 1 cut(s) 564
BseDI CCNNGG 4 cut(s) 211, 321, 384, 541
BseGI GGATG 4 cut(s) 207, 221, 403, 496
BseLI CCNNNNNNNGG 2 cut(s) 183, 351
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 4 cut(s) 75, 86, 173, 588
BseNI ACTGG 3 cut(s) 346, 418, 474
BseSI GKGCMC 2 cut(s) 345, 583
BseXI GCAGC 6 cut(s) 118, 313, 799, 878, 889, 958
BsgI GTGCAG 1 cut(s) 370
Bsh1236I CGCG 1 cut(s) 599
BshFI GGCC 2 cut(s) 383, 389
BsiHKAI GWGCWC 1 cut(s) 583
BsiSI CCGG 2 cut(s) 211, 622
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 2 cut(s) 183, 351
BsmAI GTCTC 3 cut(s) 288, 475, 551
BsmBI CGTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 2 cut(s) 383, 389
Bso31I GGTCTC 1 cut(s) 551
Bsp119I TTCGAA 1 cut(s) 885
Bsp1286I GDGCHC 2 cut(s) 345, 583
Bsp143I GATC 5 cut(s) 312, 559, 655, 814, 839
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 2 cut(s) 876, 879
BspANI GGCC 2 cut(s) 383, 389
BspCNI CTCAG 4 cut(s) 74, 85, 174, 587
BspFNI CGCG 1 cut(s) 599
BspLI GGNNCC 2 cut(s) 420, 741
BspMAI CTGCAG 2 cut(s) 136, 789
BspMI ACCTGC 1 cut(s) 792
BspOI GCTAGC 1 cut(s) 239
BspPI GGATC 1 cut(s) 650
BspQI GCTCTTC 1 cut(s) 194
BspT104I TTCGAA 1 cut(s) 885
BspTNI GGTCTC 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 3 cut(s) 346, 418, 474
BssECI CCNNGG 4 cut(s) 211, 321, 384, 541
BssMI GATC 5 cut(s) 312, 559, 655, 814, 839
BssNI GRCGYC 2 cut(s) 834, 873
BssT1I CCWWGG 2 cut(s) 321, 384
Bst4CI ACNGT 3 cut(s) 310, 545, 632
Bst6I CTCTTC 2 cut(s) 30, 194
BstACI GRCGYC 2 cut(s) 834, 873
BstBI TTCGAA 1 cut(s) 885
BstC8I GCNNGC 3 cut(s) 129, 237, 288
BstDEI CTNAG 4 cut(s) 61, 72, 182, 574
BstDSI CCRYGG 1 cut(s) 541
BstF5I GGATG 4 cut(s) 207, 221, 403, 496
BstFNI CGCG 1 cut(s) 599
BstHHI GCGC 1 cut(s) 601
BstKTI GATC 5 cut(s) 315, 562, 658, 817, 842
BstMAI GTCTC 3 cut(s) 288, 475, 551
BstMBI GATC 5 cut(s) 312, 559, 655, 814, 839
BstMWI GCNNNNNNNGC 4 cut(s) 326, 872, 875, 899
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 2 cut(s) 132, 785
BstSLI GKGCMC 2 cut(s) 345, 583
BstUI CGCG 1 cut(s) 599
BstV1I GCAGC 6 cut(s) 118, 313, 799, 878, 889, 958
BstV2I GAAGAC 1 cut(s) 451
BsuRI GGCC 2 cut(s) 383, 389
BtgI CCRYGG 1 cut(s) 541
BtsCI GGATG 4 cut(s) 207, 221, 403, 496
BtsI GCAGTG 1 cut(s) 601
BtsIMutI CAGTG 4 cut(s) 353, 481, 601, 828
BveI ACCTGC 1 cut(s) 792
Cac8I GCNNGC 3 cut(s) 129, 237, 288
CfoI GCGC 1 cut(s) 601
Cfr13I GGNCC 2 cut(s) 419, 739
CseI GACGC 2 cut(s) 842, 881
CviAII CATG 8 cut(s) 68, 80, 102, 128, 197, 736, 907, 962
DdeI CTNAG 4 cut(s) 61, 72, 182, 574
DpnI GATC 5 cut(s) 314, 561, 657, 816, 841
DpnII GATC 5 cut(s) 312, 559, 655, 814, 839
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 2 cut(s) 30, 194
EarI CTCTTC 2 cut(s) 30, 194
Eco130I CCWWGG 2 cut(s) 321, 384
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 2 cut(s) 419, 739
EcoRI GAATTC 1 cut(s) 523
EcoT14I CCWWGG 2 cut(s) 321, 384
ErhI CCWWGG 2 cut(s) 321, 384
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 8 cut(s) 71, 83, 105, 131, 200, 739, 910, 965
FaqI GGGAC 1 cut(s) 432
FatI CATG 8 cut(s) 67, 79, 101, 127, 196, 735, 906, 961
FauNDI CATATG 1 cut(s) 676
FbaI TGATCA 2 cut(s) 312, 814
FblI GTMKAC 2 cut(s) 714, 771
Fnu4HI GCNGC 8 cut(s) 132, 327, 788, 867, 876, 879, 903, 972
FokI GGATG 4 cut(s) 194, 228, 410, 483
Fsp4HI GCNGC 8 cut(s) 132, 327, 788, 867, 876, 879, 903, 972
FspBI CTAG 1 cut(s) 236
GlaI GCGC 1 cut(s) 600
GluI GCNGC 8 cut(s) 132, 327, 788, 867, 876, 879, 903, 972
GsuI CTGGAG 2 cut(s) 156, 312
HaeIII GGCC 2 cut(s) 383, 389
HapII CCGG 2 cut(s) 211, 622
HgaI GACGC 2 cut(s) 842, 881
HhaI GCGC 1 cut(s) 601
Hin1I GRCGYC 2 cut(s) 834, 873
Hin1II CATG 8 cut(s) 71, 83, 105, 131, 200, 739, 910, 965
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HincII GTYRAC 2 cut(s) 733, 856
HindII GTYRAC 2 cut(s) 733, 856
HindIII AAGCTT 1 cut(s) 914
HinfI GANTC 1 cut(s) 594
HpaII CCGG 2 cut(s) 211, 622
HphI GGTGA 2 cut(s) 611, 962
Hpy166II GTNNAC 8 cut(s) 581, 715, 733, 772, 807, 828, 856, 979
Hpy188I TCNGA 4 cut(s) 183, 246, 274, 814
Hpy188III TCNNGA 3 cut(s) 55, 500, 843
Hpy8I GTNNAC 8 cut(s) 581, 715, 733, 772, 807, 828, 856, 979
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 3 cut(s) 310, 545, 632
HpyCH4V TGCA 9 cut(s) 127, 134, 351, 569, 581, 606, 680, 787, 866
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 872, 875, 899
HpyF3I CTNAG 4 cut(s) 61, 72, 182, 574
Hsp92I GRCGYC 2 cut(s) 834, 873
Hsp92II CATG 8 cut(s) 71, 83, 105, 131, 200, 739, 910, 965
HspAI GCGC 1 cut(s) 599
Ksp22I TGATCA 2 cut(s) 312, 814
Kzo9I GATC 5 cut(s) 312, 559, 655, 814, 839
LguI GCTCTTC 1 cut(s) 194
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 6 cut(s) 118, 313, 799, 878, 889, 958
LweI GCATC 2 cut(s) 211, 694
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 163
MalI GATC 5 cut(s) 314, 561, 657, 816, 841
MboI GATC 5 cut(s) 312, 559, 655, 814, 839
MboII GAAGA 8 cut(s) 17, 32, 35, 181, 184, 456, 482, 933
MfeI CAATTG 2 cut(s) 120, 588
MhlI GDGCHC 2 cut(s) 345, 583
MlsI TGGCCA 1 cut(s) 389
MluNI TGGCCA 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 683
MnlI CCTC 5 cut(s) 62, 177, 450, 504, 547
Mox20I TGGCCA 1 cut(s) 389
MscI TGGCCA 1 cut(s) 389
MseI TTAA 1 cut(s) 933
MslI CAYNNNNRTG 1 cut(s) 966
Msp20I TGGCCA 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 520
MspI CCGG 2 cut(s) 211, 622
MspR9I CCNGG 1 cut(s) 212
MunI CAATTG 2 cut(s) 120, 588
MvnI CGCG 1 cut(s) 599
MwoI GCNNNNNNNGC 4 cut(s) 326, 872, 875, 899
NciI CCSGG 1 cut(s) 212
NdeI CATATG 1 cut(s) 676
NdeII GATC 5 cut(s) 312, 559, 655, 814, 839
NheI GCTAGC 1 cut(s) 235
NlaIII CATG 8 cut(s) 71, 83, 105, 131, 200, 739, 910, 965
NlaIV GGNNCC 2 cut(s) 420, 741
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 1 cut(s) 131
NspV TTCGAA 1 cut(s) 885
PaeI GCATGC 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 594
PflFI GACNNNGTC 1 cut(s) 767
PkrI GCNGC 8 cut(s) 133, 328, 789, 868, 877, 880, 904, 973
PspN4I GGNNCC 2 cut(s) 420, 741
PspPI GGNCC 2 cut(s) 419, 739
PstI CTGCAG 2 cut(s) 136, 789
PsyI GACNNNGTC 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 966
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 933
SatI GCNGC 8 cut(s) 132, 327, 788, 867, 876, 879, 903, 972
Sau3AI GATC 5 cut(s) 312, 559, 655, 814, 839
Sau96I GGNCC 2 cut(s) 419, 739
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 2 cut(s) 345, 583
SfaNI GCATC 2 cut(s) 211, 694
SfcI CTRYAG 2 cut(s) 132, 785
SfuI TTCGAA 1 cut(s) 885
SinI GGWCC 2 cut(s) 419, 739
SmiMI CAYNNNNRTG 1 cut(s) 966
SphI GCATGC 1 cut(s) 131
SsiI CCGC 2 cut(s) 876, 879
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 2 cut(s) 321, 384
TaaI ACNGT 3 cut(s) 310, 545, 632
TaqI TCGA 3 cut(s) 527, 762, 885
TauI GCSGC 2 cut(s) 878, 881
TfiI GAWTC 1 cut(s) 594
Tru1I TTAA 1 cut(s) 933
Tru9I TTAA 1 cut(s) 933
TscAI CASTG 4 cut(s) 353, 481, 608, 835
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 6 cut(s) 131, 326, 787, 866, 902, 971
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 4 cut(s) 17, 68, 196, 680
TspRI CASTG 4 cut(s) 353, 481, 608, 835
Tth111I GACNNNGTC 1 cut(s) 767
VneI GTGCAC 1 cut(s) 579
VpaK11BI GGWCC 2 cut(s) 419, 739
XapI RAATTY 2 cut(s) 523, 611
XceI RCATGY 1 cut(s) 131
XmiI GTMKAC 2 cut(s) 714, 771
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.