Rh6DG448000

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0016497
Physical Location & Seq
Reverse (-)
62109752 .. 62111618
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG448000.1

Sequence Viewer

Length: 978 bp
ATGAATGCTCATCTTCTTCCTTTGCTCTCTCTTCTTCTTCTTCTTCTTCTCAGCACAACTAGTGCTCAACTTCGAGTCGATCATTACAGAAACACATGCCCAAATGTCGAATCAATTGTCCATGCCGCAGTTAAACAGAAGTTTGAGCAGACATTTACGACTGCACCAGGCACTCTCAGACTCTTCTTCCACGATTGCTTTGTCCGGGGTTGTGATGCTTCAGTGATACTAGCTTTTAGGAACCACTCGGCGGAGAAGGATAACCCGGACGATATGTCACTCGCCGGAGACGGGTTTGACACGGTGATCAAAGCCAAGGCTGCTGTTGATAGAGTGGCTGGATGCAGGAACAAGGTTTCTTGTGCTGACATTCTTGCCATGGCCACAAGAGATGTCGTATCACTGAGTGGAGGACCATATTATGGAGTTGAATTGGGGAGACTTGATGGGAGGGTGTCCACAAAAACCAGTGTGAGGAAGCATCTTCCTCATCCTGATTTTAAAGTGGACCAACTGAAAGCTATGTTTTCCAAACATGGTCTCTCTCTAACCGATCTCATTGCTCTCTCGGGGGCTCATACGATCGGGTTCTCACACTGCAACCGATTCAACCACCGGATACACAACTTCAAGAGCAAGAACAGAATTGATCCGACAATGAATGTGGATTACGCAATGAGCCTCAGGAAACAGTGTCCGAAGAATGTAGACCCAAGAAATGCGATTACTTTGGACCCAACCACGCCGCAGAGATTCGATAACATGTACTACAAGAACCTTCAGCAAGGAAGAGGATTGCTTACTTCTGATCAGTGTTTGTTTACTGACACCAGAACAAGGCACATTGTCAACTTCTTTGCAGCAAACAACACAGCCTTTAAACATGCCTTCGTGGCTGCTATTACAAAGCTTGGTAGAGTTGGGGTTAAGACCGGAAAGCAAGGTGAAATTAGACGGGATTGTACCGCTGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

325

Amino Acids

36.1

Weight (kDa)

9.56

Isoelectric Point (pI)

26.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 40 - 289 7.7e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016497)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36870
malus_domestica MD15G1108300.v1.1
prunus_persica Prupe.1G460600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304911
rosa_laevigata RLG00000010939
rosa_multiflora Rmu_sc0000301.1_g000011 Rmu_sc0004222.1_g000001
rosa_roxburghii Rroxscaffold_7G00163350
rosa_rugosa Rorug06G0336200
rosa_samantha Rh6AG447500 Rh6BG454000 Rh6CG461000 Rh6DG448000
rosa_wichuraiana Rw6G038960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 422
AccI GTMKAC 1 cut(s) 708
AciI CCGC 4 cut(s) 126, 251, 746, 966
AclWI GGATC 1 cut(s) 644
AcoI YGGCCR 1 cut(s) 381
AcuI CTGAAG 2 cut(s) 204, 764
AdeI CACNNNGTG 1 cut(s) 407
AfaI GTAC 2 cut(s) 767, 964
AfiI CCNNNNNNNGG 5 cut(s) 250, 291, 422, 474, 837
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 3 cut(s) 431, 610, 631
AhdI GACNNNNNGTC 1 cut(s) 274
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 233, 521, 910
AluI AGCT 3 cut(s) 233, 521, 910
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 3 cut(s) 282, 433, 545
AlwI GGATC 1 cut(s) 644
Ama87I CYCGRG 1 cut(s) 568
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 3 cut(s) 320, 860, 896
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
AspS9I GGNCC 3 cut(s) 413, 508, 733
AsuC2I CCSGG 2 cut(s) 206, 266
AsuHPI GGTGA 2 cut(s) 316, 956
AvaI CYCGRG 1 cut(s) 568
AvaII GGWCC 3 cut(s) 413, 508, 733
AxyI CCTNAGG 1 cut(s) 683
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 307, 872, 883
BccI CCATC 1 cut(s) 440
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 1 cut(s) 612
BclI TGATCA 2 cut(s) 306, 808
BcnI CCSGG 2 cut(s) 206, 266
BcoDI GTCTC 3 cut(s) 282, 433, 545
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 2 cut(s) 60, 230
BfuI GTATCC 1 cut(s) 612
BglI GCCNNNNNGGC 1 cut(s) 893
BisI GCNGC 5 cut(s) 126, 321, 746, 861, 897
BlsI GCNGC 5 cut(s) 127, 322, 747, 862, 898
Bme1390I CCNGG 3 cut(s) 168, 206, 266
Bme18I GGWCC 3 cut(s) 413, 508, 733
BmeRI GACNNNNNGTC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 568
BmgT120I GGNCC 3 cut(s) 413, 508, 733
BmiI GGNNCC 2 cut(s) 242, 735
BmrFI CCNGG 3 cut(s) 168, 206, 266
BmsI GCATC 3 cut(s) 205, 332, 490
BpuMI CCSGG 2 cut(s) 206, 266
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 3 cut(s) 205, 315, 378
BsaWI WCCGGW 2 cut(s) 615, 932
Bsc4I CCNNNNNNNGG 5 cut(s) 250, 291, 422, 474, 837
Bse1I ACTGG 1 cut(s) 468
Bse21I CCTNAGG 1 cut(s) 683
Bse3DI GCAATG 2 cut(s) 558, 681
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 3 cut(s) 205, 315, 378
BseGI GGATG 2 cut(s) 347, 490
BseLI CCNNNNNNNGG 5 cut(s) 250, 291, 422, 474, 837
BseMI GCAATG 2 cut(s) 558, 681
BseMII CTCAG 4 cut(s) 64, 190, 395, 697
BseNI ACTGG 1 cut(s) 468
BseXI GCAGC 3 cut(s) 307, 872, 883
BsgI GTGCAG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 585
BshFI GGCC 1 cut(s) 383
BsiEI CGRYCG 1 cut(s) 585
BsiHKAI GWGCWC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 5 cut(s) 205, 266, 285, 616, 933
BslI CCNNNNNNNGG 5 cut(s) 250, 291, 422, 474, 837
BsmAI GTCTC 3 cut(s) 282, 433, 545
BsmBI CGTCTC 1 cut(s) 282
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 383
Bso31I GGTCTC 1 cut(s) 545
BsoBI CYCGRG 1 cut(s) 568
Bsp1286I GDGCHC 2 cut(s) 67, 577
Bsp143I GATC 6 cut(s) 79, 306, 553, 582, 649, 808
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 4 cut(s) 126, 251, 746, 966
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 4 cut(s) 63, 189, 396, 696
BspLI GGNNCC 2 cut(s) 242, 735
BspPI GGATC 1 cut(s) 644
BspTNI GGTCTC 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 558, 681
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 3 cut(s) 205, 315, 378
BssMI GATC 6 cut(s) 79, 306, 553, 582, 649, 808
BssT1I CCWWGG 2 cut(s) 315, 378
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 304, 693
Bst6I CTCTTC 3 cut(s) 36, 188, 784
BstDEI CTNAG 4 cut(s) 50, 176, 404, 683
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 347, 490
BstKTI GATC 6 cut(s) 82, 309, 556, 585, 652, 811
BstMAI GTCTC 3 cut(s) 282, 433, 545
BstMBI GATC 6 cut(s) 79, 306, 553, 582, 649, 808
BstMCI CGRYCG 1 cut(s) 585
BstMWI GCNNNNNNNGC 2 cut(s) 320, 893
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 3 cut(s) 99, 766, 887
BstSCI CCNGG 3 cut(s) 166, 204, 264
BstV1I GCAGC 3 cut(s) 307, 872, 883
Bsu36I CCTNAGG 1 cut(s) 683
BsuI GTATCC 1 cut(s) 612
BsuRI GGCC 1 cut(s) 383
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 2 cut(s) 347, 490
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 6 cut(s) 228, 401, 475, 595, 698, 818
Cfr13I GGNCC 3 cut(s) 413, 508, 733
Csp6I GTAC 2 cut(s) 766, 963
CspCI CAANNNNNGTGG 2 cut(s) 645, 680
CviAII CATG 6 cut(s) 96, 122, 379, 536, 763, 884
CviQI GTAC 2 cut(s) 766, 963
DdeI CTNAG 4 cut(s) 50, 176, 404, 683
DpnI GATC 6 cut(s) 81, 308, 555, 584, 651, 810
DpnII GATC 6 cut(s) 79, 306, 553, 582, 649, 808
DraI TTTAAA 2 cut(s) 502, 880
DraIII CACNNNGTG 1 cut(s) 407
DriI GACNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 3 cut(s) 36, 188, 784
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 3 cut(s) 36, 188, 784
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 315, 378
Eco24I GRGCYC 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 545
Eco47I GGWCC 3 cut(s) 413, 508, 733
Eco57I CTGAAG 2 cut(s) 204, 764
Eco81I CCTNAGG 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 315, 378
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 2 cut(s) 315, 378
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 6 cut(s) 99, 125, 382, 539, 766, 887
FatI CATG 6 cut(s) 95, 121, 378, 535, 762, 883
FbaI TGATCA 2 cut(s) 306, 808
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 5 cut(s) 126, 321, 746, 861, 897
FokI GGATG 2 cut(s) 354, 477
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 5 cut(s) 126, 321, 746, 861, 897
FspBI CTAG 2 cut(s) 60, 230
GluI GCNGC 5 cut(s) 126, 321, 746, 861, 897
HaeIII GGCC 1 cut(s) 383
HapII CCGG 5 cut(s) 205, 266, 285, 616, 933
Hin1II CATG 6 cut(s) 99, 125, 382, 539, 766, 887
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HindIII AAGCTT 1 cut(s) 908
HinfI GANTC 5 cut(s) 75, 110, 180, 606, 753
HpaII CCGG 5 cut(s) 205, 266, 285, 616, 933
HphI GGTGA 2 cut(s) 316, 956
Hpy166II GTNNAC 6 cut(s) 459, 508, 709, 822, 850, 973
Hpy188I TCNGA 4 cut(s) 179, 654, 699, 808
Hpy188III TCNNGA 3 cut(s) 494, 631, 685
Hpy8I GTNNAC 6 cut(s) 459, 508, 709, 822, 850, 973
HpyAV CCTTC 3 cut(s) 250, 788, 898
HpyCH4III ACNGT 2 cut(s) 304, 693
HpyCH4V TGCA 4 cut(s) 164, 345, 600, 860
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 893
HpyF3I CTNAG 4 cut(s) 50, 176, 404, 683
Hsp92II CATG 6 cut(s) 99, 125, 382, 539, 766, 887
Ksp22I TGATCA 2 cut(s) 306, 808
Kzo9I GATC 6 cut(s) 79, 306, 553, 582, 649, 808
Lsp1109I GCAGC 3 cut(s) 307, 872, 883
LweI GCATC 3 cut(s) 205, 332, 490
MaeI CTAG 2 cut(s) 60, 230
MaeIII GTNAC 1 cut(s) 276
MalI GATC 6 cut(s) 81, 308, 555, 584, 651, 810
MboI GATC 6 cut(s) 79, 306, 553, 582, 649, 808
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 2 cut(s) 67, 577
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 4 cut(s) 114, 431, 645, 948
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 2 cut(s) 84, 174
MmeI TCCRAC 1 cut(s) 677
MnlI CCTC 6 cut(s) 404, 444, 468, 498, 692, 785
Mox20I TGGCCA 1 cut(s) 383
MscI TGGCCA 1 cut(s) 383
MseI TTAA 4 cut(s) 132, 501, 879, 927
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 968
MspI CCGG 5 cut(s) 205, 266, 285, 616, 933
MspR9I CCNGG 3 cut(s) 168, 206, 266
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 320, 893
NciI CCSGG 2 cut(s) 206, 266
NcoI CCATGG 1 cut(s) 378
NdeII GATC 6 cut(s) 79, 306, 553, 582, 649, 808
NlaIII CATG 6 cut(s) 99, 125, 382, 539, 766, 887
NlaIV GGNNCC 2 cut(s) 242, 735
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 276
NspI RCATGY 3 cut(s) 99, 766, 887
PciI ACATGT 1 cut(s) 762
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 110, 606, 753
PflMI CCANNNNNTGG 1 cut(s) 422
PkrI GCNGC 5 cut(s) 127, 322, 747, 862, 898
Ple19I CGATCG 1 cut(s) 585
PleI GAGTC 2 cut(s) 83, 174
PpsI GAGTC 2 cut(s) 83, 174
PscI ACATGT 1 cut(s) 762
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 242, 735
PspPI GGNCC 3 cut(s) 413, 508, 733
PvuI CGATCG 1 cut(s) 585
RsaI GTAC 2 cut(s) 767, 964
RsaNI GTAC 2 cut(s) 766, 963
SaqAI TTAA 4 cut(s) 132, 501, 879, 927
SatI GCNGC 5 cut(s) 126, 321, 746, 861, 897
Sau3AI GATC 6 cut(s) 79, 306, 553, 582, 649, 808
Sau96I GGNCC 3 cut(s) 413, 508, 733
SchI GAGTC 2 cut(s) 84, 174
ScrFI CCNGG 3 cut(s) 168, 206, 266
SduI GDGCHC 2 cut(s) 67, 577
SetI ASST 6 cut(s) 235, 357, 523, 780, 912, 946
SfaNI GCATC 3 cut(s) 205, 332, 490
SinI GGWCC 3 cut(s) 413, 508, 733
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 4 cut(s) 114, 431, 645, 948
SsiI CCGC 4 cut(s) 126, 251, 746, 966
SspMI CTAG 2 cut(s) 60, 230
StyD4I CCNGG 3 cut(s) 166, 204, 264
StyI CCWWGG 2 cut(s) 315, 378
TaaI ACNGT 2 cut(s) 304, 693
TaqI TCGA 4 cut(s) 73, 78, 108, 756
TasI AATT 4 cut(s) 114, 431, 645, 948
TatI WGTACW 1 cut(s) 765
TauI GCSGC 2 cut(s) 128, 748
TfiI GAWTC 3 cut(s) 110, 606, 753
Tru1I TTAA 4 cut(s) 132, 501, 879, 927
Tru9I TTAA 4 cut(s) 132, 501, 879, 927
TscAI CASTG 6 cut(s) 228, 408, 475, 602, 698, 818
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 3 cut(s) 320, 860, 896
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 17, 674
TspRI CASTG 6 cut(s) 228, 408, 475, 602, 698, 818
Van91I CCANNNNNTGG 1 cut(s) 422
VpaK11BI GGWCC 3 cut(s) 413, 508, 733
XceI RCATGY 3 cut(s) 99, 766, 887
XmiI GTMKAC 1 cut(s) 708
XspI CTAG 2 cut(s) 60, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.