FvH4_2g37050

Protein of unknown function (DUF1350)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013928
Physical Location & Seq
Reverse (-)
27049274 .. 27052659
3386 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37050.t1

Sequence Viewer

Length: 882 bp
ATGGAAGTTAGCACTTGTCTCTCTTCGTCTTCCTCCGCCAAATTTGGATGCTTATATGACTTCCCTCAATCCCAAATCAATCGTCATAGCCATGGTTGCTTCTTCCGATTTCCGGGGAAGAGCAGAGCACTTGTTGCTGTGAGCTCAGCTTCATCCATTGCCAGCACCACCACTAGTGTCAGTAATGGGTTTGTGGGCCCAGGGAGTTCGACTCAAACTCCAACCAATACCAACAGAAACTACACCCGGAGCGGTTCTTGCTTGGTGATCCCTCCGCCGGCCGGCAAGAAGCCCCGGGCTATCATCAAGTTTCTCGGCGGTGCCTTCATCGGAGCTGTTCCTGAAGTCACCTACAGCTACTTGACTGAGCTATTGGCCAAGGAGGGGTTTCTTGTTGTTTCAGTGCCGTACAATGTGACCTTTGATCATGTCCAAGCTGCCCACCAAGTCTACGACAGGTTCAATTCTTGCTTGGACACCATCTTGGCCTCTGGATTGCCCAATGTTGATCTCTCGCCTGCCCAACTAGCTGAGTTGCCGGTGTTCTGTGTTGGCCATAGCAATGGTGCACTACTCCAAGTGCTCGCGGGGAGTTATTTCTCCGATAAAATCCCAAAGGCTAATGCCATAATCGCATACAACAACAGACCAGCTACAGAGGCTGTCCCTTACTTTGAGCAGCTTGGACCATTAGTTAATCAGATGATCCCTATTGTAGAGGCATCTCCAGTTCCTTCTATGGCTAGGACTGCCTCAGGAGATGCATGGAAGGCCCTAGTTGATGCAGCTGGAGCAGTTCTGCCAGACAATGAAAAGGAAACTCTAAATTCATTCACTAAATTTGTTGATCAGTTGCCTTCAGTGCTGAATGAGGTAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1350

Protein Analysis

294

Amino Acids

31.13

Weight (kDa)

6.51

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1350 PF07082 85 - 245 2.9e-27 Protein of unknown function (DUF1350)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43540 AT3G43540
fragaria_vesca FvH4_2g37050 FvH4_2g37050
malus_domestica MD08G1047000.v1.1
pyrus_communis pycom08g03940
rosa_chinensis RchiOBHm_Chr6g0304731
rosa_laevigata RLG00000010955
rosa_multiflora Rmu_co8515209.1_g000001
rosa_roxburghii Rroxscaffold_7G00163550
rosa_rugosa Rorug06G0333900 Rorug06G0334000
rosa_samantha Rh6AG445900 Rh6BG455800 Rh6CG459000 Rh6DG446000
rosa_wichuraiana Rw6G038790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 450
AccII CGCG 1 cut(s) 587
AciI CCGC 5 cut(s) 36, 252, 275, 318, 587
AclWI GGATC 2 cut(s) 262, 700
AcoI YGGCCR 3 cut(s) 279, 375, 553
AcsI RAATTY 3 cut(s) 41, 826, 839
AcuI CTGAAG 2 cut(s) 363, 843
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 4 cut(s) 112, 277, 281, 384
AgsI TTSAA 1 cut(s) 463
AhlI ACTAGT 1 cut(s) 173
AjnI CCWGG 1 cut(s) 199
Alw21I GWGCWC 4 cut(s) 130, 146, 571, 585
Alw26I GTCTC 1 cut(s) 23
Alw44I GTGCAC 1 cut(s) 567
AlwI GGATC 2 cut(s) 262, 700
AlwNI CAGNNNCTG 1 cut(s) 662
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 6 cut(s) 196, 279, 375, 486, 553, 771
ApaI GGGCCC 1 cut(s) 200
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 3 cut(s) 437, 679, 785
ApoI RAATTY 3 cut(s) 41, 826, 839
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
AspS9I GGNCC 4 cut(s) 196, 197, 686, 772
AsuC2I CCSGG 4 cut(s) 114, 247, 295, 296
AsuHPI GGTGA 2 cut(s) 277, 340
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 1 cut(s) 686
AxyI CCTNAGG 1 cut(s) 754
BaeGI GKGCMC 2 cut(s) 200, 571
BalI TGGCCA 2 cut(s) 377, 555
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 2 cut(s) 146, 200
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 4 cut(s) 130, 146, 571, 585
BbvI GCAGC 3 cut(s) 424, 691, 797
BccI CCATC 1 cut(s) 488
BceAI ACGGC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 201
BclI TGATCA 2 cut(s) 424, 847
BcnI CCSGG 4 cut(s) 114, 247, 295, 296
BcoDI GTCTC 1 cut(s) 23
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 4 cut(s) 174, 527, 744, 776
BfmI CTRYAG 2 cut(s) 352, 654
BisI GCNGC 3 cut(s) 438, 680, 786
BlpI GCTNAGC 1 cut(s) 145
BlsI GCNGC 3 cut(s) 439, 681, 787
Bme1390I CCNGG 5 cut(s) 114, 201, 247, 295, 296
Bme18I GGWCC 1 cut(s) 686
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 4 cut(s) 196, 197, 686, 772
BmiI GGNNCC 2 cut(s) 198, 322
BmrFI CCNGG 5 cut(s) 114, 201, 247, 295, 296
BmsI GCATC 4 cut(s) 38, 731, 751, 772
BpiI GAAGAC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpmI CTGGAG 2 cut(s) 711, 810
Bpu1102I GCTNAGC 1 cut(s) 145
BpuMI CCSGG 4 cut(s) 114, 247, 295, 296
BsaJI CCNNGG 7 cut(s) 91, 113, 199, 200, 293, 294, 378
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 277, 281, 384
Bse118I RCCGGY 3 cut(s) 277, 281, 538
Bse1I ACTGG 1 cut(s) 728
Bse21I CCTNAGG 1 cut(s) 754
Bse3DI GCAATG 2 cut(s) 156, 568
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 7 cut(s) 91, 113, 199, 200, 293, 294, 378
BseGI GGATG 2 cut(s) 53, 152
BseLI CCNNNNNNNGG 4 cut(s) 112, 277, 281, 384
BseMI GCAATG 2 cut(s) 156, 568
BseMII CTCAG 4 cut(s) 159, 357, 522, 768
BseNI ACTGG 1 cut(s) 728
BseSI GKGCMC 2 cut(s) 200, 571
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 424, 691, 797
Bsh1236I CGCG 1 cut(s) 587
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 6 cut(s) 198, 281, 377, 488, 555, 773
BshNI GGYRCC 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 4 cut(s) 130, 146, 571, 585
BsiHKCI CYCGRG 1 cut(s) 294
BsiSI CCGG 6 cut(s) 113, 247, 278, 282, 295, 539
BslFI GGGAC 1 cut(s) 650
BslI CCNNNNNNNGG 4 cut(s) 112, 277, 281, 384
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 650
BsnI GGCC 6 cut(s) 198, 281, 377, 488, 555, 773
BsoBI CYCGRG 1 cut(s) 294
Bsp120I GGGCCC 1 cut(s) 196
Bsp1286I GDGCHC 5 cut(s) 130, 146, 200, 571, 585
Bsp143I GATC 5 cut(s) 267, 424, 508, 705, 847
Bsp1720I GCTNAGC 1 cut(s) 145
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 5 cut(s) 36, 252, 275, 318, 587
BspANI GGCC 6 cut(s) 198, 281, 377, 488, 555, 773
BspCNI CTCAG 4 cut(s) 158, 358, 523, 767
BspFNI CGCG 1 cut(s) 587
BspLI GGNNCC 2 cut(s) 198, 322
BspPI GGATC 2 cut(s) 262, 700
BspQI GCTCTTC 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 320
BsrBI CCGCTC 1 cut(s) 252
BsrDI GCAATG 2 cut(s) 156, 568
BsrFI RCCGGY 3 cut(s) 277, 281, 538
BsrI ACTGG 1 cut(s) 728
BssAI RCCGGY 3 cut(s) 277, 281, 538
BssECI CCNNGG 7 cut(s) 91, 113, 199, 200, 293, 294, 378
BssMI GATC 5 cut(s) 267, 424, 508, 705, 847
BssT1I CCWWGG 2 cut(s) 91, 378
Bst2UI CCWGG 1 cut(s) 201
Bst6I CTCTTC 2 cut(s) 28, 113
BstAPI GCANNNNNTGC 1 cut(s) 134
BstC8I GCNNGC 5 cut(s) 163, 279, 283, 519, 585
BstDEI CTNAG 4 cut(s) 145, 366, 531, 754
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 2 cut(s) 53, 152
BstFNI CGCG 1 cut(s) 587
BstKTI GATC 5 cut(s) 270, 427, 511, 708, 850
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 5 cut(s) 267, 424, 508, 705, 847
BstMCI CGRYCG 1 cut(s) 282
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 5 cut(s) 112, 199, 245, 293, 294
BstSFI CTRYAG 2 cut(s) 352, 654
BstSLI GKGCMC 2 cut(s) 200, 571
BstUI CGCG 1 cut(s) 587
BstV1I GCAGC 3 cut(s) 424, 691, 797
BstV2I GAAGAC 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 563
BstZI CGGCCG 1 cut(s) 279
Bsu36I CCTNAGG 1 cut(s) 754
BsuRI GGCC 6 cut(s) 198, 281, 377, 488, 555, 773
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 2 cut(s) 53, 152
BtsIMutI CAGTG 2 cut(s) 408, 867
Cac8I GCNNGC 5 cut(s) 163, 279, 283, 519, 585
CaiI CAGNNNCTG 1 cut(s) 662
Cfr10I RCCGGY 3 cut(s) 277, 281, 538
Cfr13I GGNCC 4 cut(s) 196, 197, 686, 772
Cfr9I CCCGGG 1 cut(s) 294
Csp6I GTAC 1 cut(s) 409
CviAII CATG 3 cut(s) 92, 428, 765
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 4 cut(s) 145, 366, 531, 754
DpnI GATC 5 cut(s) 269, 426, 510, 707, 849
DpnII GATC 5 cut(s) 267, 424, 508, 705, 847
EaeI YGGCCR 3 cut(s) 279, 375, 553
EagI CGGCCG 1 cut(s) 279
Eam1104I CTCTTC 2 cut(s) 28, 113
EarI CTCTTC 2 cut(s) 28, 113
EciI GGCGGA 2 cut(s) 25, 264
Ecl136II GAGCTC 1 cut(s) 144
EclXI CGGCCG 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 91, 378
Eco24I GRGCYC 2 cut(s) 146, 200
Eco47I GGWCC 1 cut(s) 686
Eco52I CGGCCG 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 144
Eco57I CTGAAG 2 cut(s) 363, 843
Eco81I CCTNAGG 1 cut(s) 754
Eco88I CYCGRG 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 772
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 91, 378
EcoT22I ATGCAT 1 cut(s) 766
EcoT38I GRGCYC 2 cut(s) 146, 200
ErhI CCWWGG 2 cut(s) 91, 378
FaeI CATG 3 cut(s) 95, 431, 768
FaqI GGGAC 1 cut(s) 650
FatI CATG 3 cut(s) 91, 427, 764
FauI CCCGC 1 cut(s) 580
FbaI TGATCA 2 cut(s) 424, 847
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 3 cut(s) 438, 680, 786
FokI GGATG 2 cut(s) 60, 139
FriOI GRGCYC 2 cut(s) 146, 200
Fsp4HI GCNGC 3 cut(s) 438, 680, 786
FspBI CTAG 4 cut(s) 174, 527, 744, 776
GluI GCNGC 3 cut(s) 438, 680, 786
GsuI CTGGAG 2 cut(s) 711, 810
HaeIII GGCC 6 cut(s) 198, 281, 377, 488, 555, 773
HapII CCGG 6 cut(s) 113, 247, 278, 282, 295, 539
Hin1II CATG 3 cut(s) 95, 431, 768
HinfI GANTC 1 cut(s) 211
HpaII CCGG 6 cut(s) 113, 247, 278, 282, 295, 539
HphI GGTGA 2 cut(s) 277, 340
Hpy166II GTNNAC 2 cut(s) 451, 569
Hpy188I TCNGA 4 cut(s) 107, 332, 604, 702
Hpy188III TCNNGA 3 cut(s) 341, 492, 756
Hpy8I GTNNAC 2 cut(s) 451, 569
HpyAV CCTTC 4 cut(s) 334, 744, 763, 867
HpyCH4V TGCA 3 cut(s) 569, 764, 785
HpyF3I CTNAG 4 cut(s) 145, 366, 531, 754
Hsp92II CATG 3 cut(s) 95, 431, 768
KroI GCCGGC 2 cut(s) 277, 281
KroNI GCCGGC 2 cut(s) 279, 283
Ksp22I TGATCA 2 cut(s) 424, 847
Kzo9I GATC 5 cut(s) 267, 424, 508, 705, 847
LguI GCTCTTC 1 cut(s) 113
LmnI GCTCC 3 cut(s) 249, 332, 791
Lsp1109I GCAGC 3 cut(s) 424, 691, 797
LweI GCATC 4 cut(s) 38, 731, 751, 772
MaeI CTAG 4 cut(s) 174, 527, 744, 776
MaeIII GTNAC 3 cut(s) 346, 415, 874
MalI GATC 5 cut(s) 269, 426, 510, 707, 849
MbiI CCGCTC 1 cut(s) 252
MboI GATC 5 cut(s) 267, 424, 508, 705, 847
MboII GAAGA 4 cut(s) 15, 21, 94, 130
MhlI GDGCHC 5 cut(s) 130, 146, 200, 571, 585
MlsI TGGCCA 2 cut(s) 377, 555
MluCI AATT 4 cut(s) 41, 463, 826, 839
MluNI TGGCCA 2 cut(s) 377, 555
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 9 cut(s) 43, 75, 282, 376, 499, 652, 712, 763, 865
Mox20I TGGCCA 2 cut(s) 377, 555
Mph1103I ATGCAT 1 cut(s) 766
MroNI GCCGGC 2 cut(s) 277, 281
MscI TGGCCA 2 cut(s) 377, 555
MseI TTAA 2 cut(s) 696, 880
MslI CAYNNNNRTG 2 cut(s) 90, 561
Msp20I TGGCCA 2 cut(s) 377, 555
MspA1I CMGCKG 1 cut(s) 788
MspI CCGG 6 cut(s) 113, 247, 278, 282, 295, 539
MspR9I CCNGG 5 cut(s) 114, 201, 247, 295, 296
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 587
NaeI GCCGGC 2 cut(s) 279, 283
NciI CCSGG 4 cut(s) 114, 247, 295, 296
NcoI CCATGG 1 cut(s) 91
NdeII GATC 5 cut(s) 267, 424, 508, 705, 847
NgoMIV GCCGGC 2 cut(s) 277, 281
NlaIII CATG 3 cut(s) 95, 431, 768
NlaIV GGNNCC 2 cut(s) 198, 322
NmeAIII GCCGAG 1 cut(s) 294
NmuCI GTSAC 2 cut(s) 346, 415
NsiI ATGCAT 1 cut(s) 766
PasI CCCWGGG 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 113
PdiI GCCGGC 2 cut(s) 279, 283
PkrI GCNGC 3 cut(s) 439, 681, 787
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 198, 322
PspOMI GGGCCC 1 cut(s) 196
PspPI GGNCC 4 cut(s) 196, 197, 686, 772
PstNI CAGNNNCTG 1 cut(s) 662
PvuII CAGCTG 1 cut(s) 788
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 2 cut(s) 90, 561
SacI GAGCTC 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 696, 880
SatI GCNGC 3 cut(s) 438, 680, 786
Sau3AI GATC 5 cut(s) 267, 424, 508, 705, 847
Sau96I GGNCC 4 cut(s) 196, 197, 686, 772
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 5 cut(s) 114, 201, 247, 295, 296
SduI GDGCHC 5 cut(s) 130, 146, 200, 571, 585
SfaNI GCATC 4 cut(s) 38, 731, 751, 772
SfcI CTRYAG 2 cut(s) 352, 654
SinI GGWCC 1 cut(s) 686
SmaI CCCGGG 1 cut(s) 296
SmiMI CAYNNNNRTG 2 cut(s) 90, 561
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 4 cut(s) 41, 463, 826, 839
SsiI CCGC 5 cut(s) 36, 252, 275, 318, 587
SspMI CTAG 4 cut(s) 174, 527, 744, 776
SstI GAGCTC 1 cut(s) 146
StyD4I CCNGG 5 cut(s) 112, 199, 245, 293, 294
StyI CCWWGG 2 cut(s) 91, 378
TaqI TCGA 1 cut(s) 209
TasI AATT 4 cut(s) 41, 463, 826, 839
Tru1I TTAA 2 cut(s) 696, 880
Tru9I TTAA 2 cut(s) 696, 880
TscAI CASTG 2 cut(s) 408, 867
TseFI GTSAC 2 cut(s) 346, 415
TseI GCWGC 3 cut(s) 437, 679, 785
Tsp45I GTSAC 2 cut(s) 346, 415
TspDTI ATGAA 4 cut(s) 141, 316, 819, 825
TspMI CCCGGG 1 cut(s) 294
TspRI CASTG 2 cut(s) 408, 867
VneI GTGCAC 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 686
XapI RAATTY 3 cut(s) 41, 826, 839
XmaI CCCGGG 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 4 cut(s) 174, 527, 744, 776
Zsp2I ATGCAT 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.