Rh6BG455800

Protein of unknown function (DUF1350)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013928
Physical Location & Seq
Reverse (-)
66849469 .. 66853056
3588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG455800.1

Sequence Viewer

Length: 966 bp
ATGGAAGTTACCACTTCGTCTTCCTCCGCCAAATTTGGATGCGCATACGACTTCCCTCAATTCCGAGTCAACCGTCATGGCCATAGTTGCTTCTTCCGATTTCCATGGAAGAGCAGAGCAGTTGTTGCAGTGAGCTCAACTTCATCCACTACCAACACCACCACTAGTGTCAGTAATGGGTATGTGGGCCCAGGCATCCGAAACTACACCCGGAGCGGTTCTTGCTTGCTGATCCCTCCGCCGGCCGGCAAGAAGCCCCGGGCTATCATCAAGTTTCTGGGCGGTGCCTTCATCGGGGCTGTTCCTGAAGTCACTTACAGCTACTTGACTGAGCTATTGGCCAAGGAGGGGTTTCTGGTTATTTCAGTGCCGTATAATGTGACCTTTGATCATGTCCAAGCTGCTCACCAAGTCTATGAGAGGTTCAACTCTTGCTTGGACACCATCTTAGCCTCTGGATTGCCCAATGTTGATCTATCACCTGCCCAACTAGCTGAGTTGCCAGTGTTTTCTGTTGGCCATAGCAATGGTGCACTACTCCAAGTGCTCGCTGGGAGCTATTTCTCCGATAAAATCCCAAAGGCTAATGCCATAATCGCATACAACAATAGACCAGCAACAGAGGCTGTCCCTTACTTTGAGCAGCTTGGACCGTTAGTTAATCAGATGGTCCCTATTGTAGAAGCATCTCCCGTTCCTTCCATGGCTAGGACTGCCTCAGGAGATGCATGGAAGGCTCTAGTTGATGCAGCTGGAGCAGTTCTACCAGACAATGAAAAGGAAACTCTAAATTCACTCACTAAGTTTGTTGATCAGTTGCCGTTGGTGCTGAATGAGGTAACCCAAGGGACATCAGAGTTTAAGCCAACACCCTCTGAAAATCGTGAATTTTTTAAGAGCTCATACAATGTGAAACACACTCTACTGGTATGGATGATGTCCCACTATTACTATTCTGTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1350

Protein Analysis

321

Amino Acids

34.95

Weight (kDa)

7.68

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1350 PF07082 72 - 311 1.4e-29 Protein of unknown function (DUF1350)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43540 AT3G43540
fragaria_vesca FvH4_2g37050 FvH4_2g37050
malus_domestica MD08G1047000.v1.1
pyrus_communis pycom08g03940
rosa_chinensis RchiOBHm_Chr6g0304731
rosa_laevigata RLG00000010955
rosa_multiflora Rmu_co8515209.1_g000001
rosa_roxburghii Rroxscaffold_7G00163550
rosa_rugosa Rorug06G0333900 Rorug06G0334000
rosa_samantha Rh6AG445900 Rh6BG455800 Rh6CG459000 Rh6DG446000
rosa_wichuraiana Rw6G038790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 490
Acc16I TGCGCA 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 216
AciI CCGC 4 cut(s) 27, 216, 239, 282
AclWI GGATC 1 cut(s) 226
AcoI YGGCCR 4 cut(s) 79, 243, 339, 517
AcsI RAATTY 3 cut(s) 32, 790, 887
AcuI CTGAAG 1 cut(s) 327
AfiI CCNNNNNNNGG 5 cut(s) 241, 245, 294, 348, 708
AgsI TTSAA 1 cut(s) 427
AhlI ACTAGT 1 cut(s) 164
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 9 cut(s) 135, 321, 334, 401, 494, 558, 646, 752, 900
AluI AGCT 9 cut(s) 135, 321, 334, 401, 494, 558, 646, 752, 900
Alw21I GWGCWC 4 cut(s) 137, 535, 549, 902
Alw44I GTGCAC 1 cut(s) 531
AlwI GGATC 1 cut(s) 226
AlwNI CAGNNNCTG 1 cut(s) 626
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 5 cut(s) 79, 187, 243, 339, 517
ApaI GGGCCC 1 cut(s) 191
ApaLI GTGCAC 1 cut(s) 531
ApeKI GCWGC 3 cut(s) 401, 643, 749
ApoI RAATTY 3 cut(s) 32, 790, 887
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 4 cut(s) 187, 188, 650, 670
AsuC2I CCSGG 3 cut(s) 211, 259, 260
AsuHPI GGTGA 2 cut(s) 398, 471
AvaI CYCGRG 1 cut(s) 258
AvaII GGWCC 2 cut(s) 650, 670
AxyI CCTNAGG 1 cut(s) 718
BaeGI GKGCMC 2 cut(s) 191, 535
BalI TGGCCA 3 cut(s) 81, 341, 519
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 3 cut(s) 137, 191, 902
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 4 cut(s) 137, 535, 549, 902
BbvI GCAGC 3 cut(s) 388, 655, 761
BccI CCATC 2 cut(s) 452, 661
BceAI ACGGC 2 cut(s) 355, 805
BciT130I CCWGG 1 cut(s) 192
BclI TGATCA 2 cut(s) 388, 811
BcnI CCSGG 3 cut(s) 211, 259, 260
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 4 cut(s) 165, 491, 708, 740
BfuAI ACCTGC 1 cut(s) 490
BisI GCNGC 3 cut(s) 402, 644, 750
BlsI GCNGC 3 cut(s) 403, 645, 751
Bme1390I CCNGG 4 cut(s) 192, 211, 259, 260
Bme18I GGWCC 2 cut(s) 650, 670
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 4 cut(s) 187, 188, 650, 670
BmiI GGNNCC 3 cut(s) 189, 286, 672
BmrFI CCNGG 4 cut(s) 192, 211, 259, 260
BmsI GCATC 5 cut(s) 29, 204, 695, 715, 736
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 774
BpuMI CCSGG 3 cut(s) 211, 259, 260
BsaJI CCNNGG 7 cut(s) 104, 190, 257, 258, 342, 702, 844
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 245, 294, 348, 708
Bse118I RCCGGY 2 cut(s) 241, 245
Bse1I ACTGG 2 cut(s) 503, 930
Bse21I CCTNAGG 1 cut(s) 718
Bse3DI GCAATG 1 cut(s) 532
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 7 cut(s) 104, 190, 257, 258, 342, 702, 844
BseGI GGATG 4 cut(s) 44, 143, 195, 939
BseLI CCNNNNNNNGG 5 cut(s) 241, 245, 294, 348, 708
BseMI GCAATG 1 cut(s) 532
BseMII CTCAG 3 cut(s) 321, 486, 732
BseNI ACTGG 2 cut(s) 503, 930
BseSI GKGCMC 2 cut(s) 191, 535
BseX3I CGGCCG 1 cut(s) 243
BseXI GCAGC 3 cut(s) 388, 655, 761
BseYI CCCAGC 1 cut(s) 551
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 5 cut(s) 81, 189, 245, 341, 519
BshNI GGYRCC 1 cut(s) 284
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 4 cut(s) 137, 535, 549, 902
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 4 cut(s) 211, 242, 246, 259
BslFI GGGAC 4 cut(s) 614, 656, 862, 925
BslI CCNNNNNNNGG 5 cut(s) 241, 245, 294, 348, 708
BsmFI GGGAC 4 cut(s) 614, 656, 862, 925
BsnI GGCC 5 cut(s) 81, 189, 245, 341, 519
BsoBI CYCGRG 1 cut(s) 258
Bsp120I GGGCCC 1 cut(s) 187
Bsp1286I GDGCHC 5 cut(s) 137, 191, 535, 549, 902
Bsp143I GATC 4 cut(s) 231, 388, 472, 811
Bsp19I CCATGG 2 cut(s) 104, 702
BspACI CCGC 4 cut(s) 27, 216, 239, 282
BspANI GGCC 5 cut(s) 81, 189, 245, 341, 519
BspCNI CTCAG 3 cut(s) 322, 487, 731
BspLI GGNNCC 3 cut(s) 189, 286, 672
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 1 cut(s) 226
BspQI GCTCTTC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 284
BsrBI CCGCTC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 532
BsrFI RCCGGY 2 cut(s) 241, 245
BsrI ACTGG 2 cut(s) 503, 930
BssAI RCCGGY 2 cut(s) 241, 245
BssECI CCNNGG 7 cut(s) 104, 190, 257, 258, 342, 702, 844
BssMI GATC 4 cut(s) 231, 388, 472, 811
BssT1I CCWWGG 4 cut(s) 104, 342, 702, 844
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 74, 654
Bst6I CTCTTC 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 125
BstC8I GCNNGC 4 cut(s) 227, 243, 247, 549
BstDEI CTNAG 5 cut(s) 330, 448, 495, 718, 801
BstDSI CCRYGG 2 cut(s) 104, 702
BstEII GGTNACC 1 cut(s) 838
BstF5I GGATG 4 cut(s) 44, 143, 195, 939
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 4 cut(s) 234, 391, 475, 814
BstMBI GATC 4 cut(s) 231, 388, 472, 811
BstMCI CGRYCG 1 cut(s) 246
BstNI CCWGG 1 cut(s) 192
BstPI GGTNACC 1 cut(s) 838
BstSCI CCNGG 4 cut(s) 190, 209, 257, 258
BstSLI GKGCMC 2 cut(s) 191, 535
BstV1I GCAGC 3 cut(s) 388, 655, 761
BstV2I GAAGAC 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 527
BstZI CGGCCG 1 cut(s) 243
Bsu36I CCTNAGG 1 cut(s) 718
BsuRI GGCC 5 cut(s) 81, 189, 245, 341, 519
BtgI CCRYGG 2 cut(s) 104, 702
BtsCI GGATG 4 cut(s) 44, 143, 195, 939
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 3 cut(s) 135, 372, 510
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 4 cut(s) 227, 243, 247, 549
CaiI CAGNNNCTG 1 cut(s) 626
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 2 cut(s) 241, 245
Cfr13I GGNCC 4 cut(s) 187, 188, 650, 670
Cfr9I CCCGGG 1 cut(s) 258
CviAII CATG 5 cut(s) 77, 105, 392, 703, 729
DdeI CTNAG 5 cut(s) 330, 448, 495, 718, 801
DpnI GATC 4 cut(s) 233, 390, 474, 813
DpnII GATC 4 cut(s) 231, 388, 472, 811
EaeI YGGCCR 4 cut(s) 79, 243, 339, 517
EagI CGGCCG 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EciI GGCGGA 2 cut(s) 16, 228
Ecl136II GAGCTC 2 cut(s) 135, 900
EclXI CGGCCG 1 cut(s) 243
Eco130I CCWWGG 4 cut(s) 104, 342, 702, 844
Eco24I GRGCYC 3 cut(s) 137, 191, 902
Eco47I GGWCC 2 cut(s) 650, 670
Eco52I CGGCCG 1 cut(s) 243
Eco53kI GAGCTC 2 cut(s) 135, 900
Eco57I CTGAAG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 718
Eco88I CYCGRG 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 838
EcoICRI GAGCTC 2 cut(s) 135, 900
EcoO65I GGTNACC 1 cut(s) 838
EcoRII CCWGG 1 cut(s) 190
EcoT14I CCWWGG 4 cut(s) 104, 342, 702, 844
EcoT22I ATGCAT 1 cut(s) 730
EcoT38I GRGCYC 3 cut(s) 137, 191, 902
ErhI CCWWGG 4 cut(s) 104, 342, 702, 844
FaeI CATG 5 cut(s) 80, 108, 395, 706, 732
FaqI GGGAC 4 cut(s) 614, 656, 862, 925
FatI CATG 5 cut(s) 76, 104, 391, 702, 728
FbaI TGATCA 2 cut(s) 388, 811
Fnu4HI GCNGC 3 cut(s) 402, 644, 750
FokI GGATG 4 cut(s) 51, 130, 182, 946
FriOI GRGCYC 3 cut(s) 137, 191, 902
Fsp4HI GCNGC 3 cut(s) 402, 644, 750
FspAI RTGCGCAY 1 cut(s) 43
FspBI CTAG 4 cut(s) 165, 491, 708, 740
FspI TGCGCA 1 cut(s) 43
GlaI GCGC 1 cut(s) 43
GluI GCNGC 3 cut(s) 402, 644, 750
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 1 cut(s) 774
HaeIII GGCC 5 cut(s) 81, 189, 245, 341, 519
HapII CCGG 4 cut(s) 211, 242, 246, 259
HhaI GCGC 1 cut(s) 44
Hin1II CATG 5 cut(s) 80, 108, 395, 706, 732
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 1 cut(s) 66
HpaII CCGG 4 cut(s) 211, 242, 246, 259
HphI GGTGA 2 cut(s) 398, 471
Hpy166II GTNNAC 2 cut(s) 70, 533
Hpy188I TCNGA 7 cut(s) 65, 98, 200, 568, 666, 856, 877
Hpy188III TCNNGA 4 cut(s) 305, 456, 720, 884
Hpy8I GTNNAC 2 cut(s) 70, 533
HpyAV CCTTC 3 cut(s) 298, 708, 727
HpyCH4III ACNGT 2 cut(s) 74, 654
HpyCH4V TGCA 4 cut(s) 128, 533, 728, 749
HpyF3I CTNAG 5 cut(s) 330, 448, 495, 718, 801
Hsp92II CATG 5 cut(s) 80, 108, 395, 706, 732
HspAI GCGC 1 cut(s) 42
KroI GCCGGC 2 cut(s) 241, 245
KroNI GCCGGC 2 cut(s) 243, 247
Ksp22I TGATCA 2 cut(s) 388, 811
Kzo9I GATC 4 cut(s) 231, 388, 472, 811
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 3 cut(s) 213, 555, 755
Lsp1109I GCAGC 3 cut(s) 388, 655, 761
LweI GCATC 5 cut(s) 29, 204, 695, 715, 736
MaeI CTAG 4 cut(s) 165, 491, 708, 740
MaeIII GTNAC 4 cut(s) 7, 310, 379, 838
MalI GATC 4 cut(s) 233, 390, 474, 813
MbiI CCGCTC 1 cut(s) 216
MboI GATC 4 cut(s) 231, 388, 472, 811
MboII GAAGA 3 cut(s) 12, 85, 121
MhlI GDGCHC 5 cut(s) 137, 191, 535, 549, 902
MlsI TGGCCA 3 cut(s) 81, 341, 519
MluCI AATT 4 cut(s) 32, 59, 790, 887
MluNI TGGCCA 3 cut(s) 81, 341, 519
MlyI GAGTC 1 cut(s) 75
Mox20I TGGCCA 3 cut(s) 81, 341, 519
Mph1103I ATGCAT 1 cut(s) 730
MroNI GCCGGC 2 cut(s) 241, 245
MscI TGGCCA 3 cut(s) 81, 341, 519
MseI TTAA 3 cut(s) 660, 861, 894
MslI CAYNNNNRTG 1 cut(s) 525
Msp20I TGGCCA 3 cut(s) 81, 341, 519
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 4 cut(s) 211, 242, 246, 259
MspR9I CCNGG 4 cut(s) 192, 211, 259, 260
MvaI CCWGG 1 cut(s) 192
NaeI GCCGGC 2 cut(s) 243, 247
NciI CCSGG 3 cut(s) 211, 259, 260
NcoI CCATGG 2 cut(s) 104, 702
NdeII GATC 4 cut(s) 231, 388, 472, 811
NgoMIV GCCGGC 2 cut(s) 241, 245
NlaIII CATG 5 cut(s) 80, 108, 395, 706, 732
NlaIV GGNNCC 3 cut(s) 189, 286, 672
NmuCI GTSAC 2 cut(s) 310, 379
NsbI TGCGCA 1 cut(s) 43
NsiI ATGCAT 1 cut(s) 730
PaqCI CACCTGC 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 104
PdiI GCCGGC 2 cut(s) 243, 247
PkrI GCNGC 3 cut(s) 403, 645, 751
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Psp124BI GAGCTC 2 cut(s) 137, 902
Psp6I CCWGG 1 cut(s) 190
PspEI GGTNACC 1 cut(s) 838
PspFI CCCAGC 1 cut(s) 551
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 3 cut(s) 189, 286, 672
PspOMI GGGCCC 1 cut(s) 187
PspPI GGNCC 4 cut(s) 187, 188, 650, 670
PstNI CAGNNNCTG 1 cut(s) 626
PvuII CAGCTG 1 cut(s) 752
RseI CAYNNNNRTG 1 cut(s) 525
SacI GAGCTC 2 cut(s) 137, 902
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 3 cut(s) 660, 861, 894
SatI GCNGC 3 cut(s) 402, 644, 750
Sau3AI GATC 4 cut(s) 231, 388, 472, 811
Sau96I GGNCC 4 cut(s) 187, 188, 650, 670
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 4 cut(s) 192, 211, 259, 260
SduI GDGCHC 5 cut(s) 137, 191, 535, 549, 902
SfaNI GCATC 5 cut(s) 29, 204, 695, 715, 736
SinI GGWCC 2 cut(s) 650, 670
SmaI CCCGGG 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 525
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 4 cut(s) 32, 59, 790, 887
SsiI CCGC 4 cut(s) 27, 216, 239, 282
SspMI CTAG 4 cut(s) 165, 491, 708, 740
SstI GAGCTC 2 cut(s) 137, 902
StyD4I CCNGG 4 cut(s) 190, 209, 257, 258
StyI CCWWGG 4 cut(s) 104, 342, 702, 844
TaaI ACNGT 2 cut(s) 74, 654
TasI AATT 4 cut(s) 32, 59, 790, 887
Tru1I TTAA 3 cut(s) 660, 861, 894
Tru9I TTAA 3 cut(s) 660, 861, 894
TscAI CASTG 3 cut(s) 135, 372, 510
TseFI GTSAC 2 cut(s) 310, 379
TseI GCWGC 3 cut(s) 401, 643, 749
Tsp45I GTSAC 2 cut(s) 310, 379
TspDTI ATGAA 3 cut(s) 132, 280, 789
TspMI CCCGGG 1 cut(s) 258
TspRI CASTG 3 cut(s) 135, 372, 510
VneI GTGCAC 1 cut(s) 531
VpaK11BI GGWCC 2 cut(s) 650, 670
XapI RAATTY 3 cut(s) 32, 790, 887
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XmaI CCCGGG 1 cut(s) 258
XspI CTAG 4 cut(s) 165, 491, 708, 740
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.