Rmu_co8515209.1_g000001

Protein of unknown function (DUF1350)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8515209.1
OG0013928
Physical Location & Seq
Forward (+)
1 .. 3249
3249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8515209.1_g000001.1.cds

Sequence Viewer

Length: 1211 bp
acatccatcttataatggaagttaccacttcgtcttcctccgccaaacttggatgcgcatacgacttccctcaattccaaatcaaccgtcatggccatagttgcttcttccgatttccatggaagagcagagcagttgttgcagtgagctcaacttcatccactaccaacaccaccaccactagtgtcagtaatgggtatgtggccccaggcatccgaaactacacccggagcggttcttgcgtgctgatccctccgccggccggcaagaagccccgggctatcatcaagtttctgggcggtgccttcatcggagctgttcctgaagtcacttacagctacttgactgagctattggccaaggaggggtttctggttatttcagtgccgtataatgtgacctttgatcatgtccaagctgctcaccaagtctatgagaggttcaactcttgcttggacaccatcttagcctctggattgcccaatgttgatctatcacctgcccaactagctgagttgccagtgttttctgttggccatagcaatggcgcactactccaagtgctcactgggagctatttctccgataaaatcccaaaggctaatgccataatcgcatacaacaatagaccagcaacagaggctgtcccttactttgagcagcttggaccgttagttaatcagatggtccctattgtagaagcatctcccgttccttccatggctaggactgcgtcaggagatgcatggaaggctctagttgatgcagctggagcagttctaccagacaatgaaaaggaaactctaaattcactcactaagtttgttgatcagttgccgttggtgctgaatgaggtaacccaagggacatcagagtttaagccaacaccctctgaaaatcgtgaatgttttaagagctcatacaatgtgaaacacactctactggtgaagttcaaatttgacggaattgatgagacagatactctcgaggacacattgaagcctcgtgtggaagctattggcgggacactagaaaaggtcgagataagtggtaaccatatcacaccatgcgtccaggagcccaagtggcaagtaggtaccttgtacactcctgcagatgctattgctcagagtcttaaaactctttcgctaaatgatgttagagtcctatcaagaactataatcgactggtttcgaggttttgaatattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1350

Protein Analysis

402

Amino Acids

43.84

Weight (kDa)

6.1

Isoelectric Point (pI)

28.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43540 AT3G43540
fragaria_vesca FvH4_2g37050 FvH4_2g37050
malus_domestica MD08G1047000.v1.1
pyrus_communis pycom08g03940
rosa_chinensis RchiOBHm_Chr6g0304731
rosa_laevigata RLG00000010955
rosa_multiflora Rmu_co8515209.1_g000001
rosa_roxburghii Rroxscaffold_7G00163550
rosa_rugosa Rorug06G0333900 Rorug06G0334000
rosa_samantha Rh6AG445900 Rh6BG455800 Rh6CG459000 Rh6DG446000
rosa_wichuraiana Rw6G038790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 13
AarI CACCTGC 1 cut(s) 507
Acc16I TGCGCA 1 cut(s) 57
Acc36I ACCTGC 1 cut(s) 507
Acc65I GGTACC 1 cut(s) 1096
AccB1I GGYRCC 2 cut(s) 301, 1096
AccBSI CCGCTC 1 cut(s) 233
AciI CCGC 5 cut(s) 41, 233, 256, 299, 1022
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 4 cut(s) 93, 260, 356, 534
AcsI RAATTY 2 cut(s) 807, 955
AcuI CTGAAG 1 cut(s) 344
AfaI GTAC 2 cut(s) 1098, 1105
AfiI CCNNNNNNNGG 4 cut(s) 258, 262, 365, 725
AgsI TTSAA 4 cut(s) 444, 954, 999, 1204
AhlI ACTAGT 1 cut(s) 181
AjnI CCWGG 2 cut(s) 207, 1073
Alw21I GWGCWC 3 cut(s) 151, 566, 919
Alw26I GTCTC 1 cut(s) 967
AlwI GGATC 1 cut(s) 243
AlwNI CAGNNNCTG 1 cut(s) 643
Ama87I CYCGRG 2 cut(s) 275, 985
AoxI GGCC 5 cut(s) 93, 203, 260, 356, 534
ApeKI GCWGC 3 cut(s) 418, 660, 766
ApoI RAATTY 2 cut(s) 807, 955
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
Asp718I GGTACC 1 cut(s) 1096
AspLEI GCGC 2 cut(s) 58, 550
AspS9I GGNCC 3 cut(s) 204, 667, 687
AsuC2I CCSGG 3 cut(s) 228, 276, 277
AsuHPI GGTGA 3 cut(s) 415, 488, 957
AvaI CYCGRG 2 cut(s) 275, 985
AvaII GGWCC 2 cut(s) 667, 687
BalI TGGCCA 3 cut(s) 95, 358, 536
BanI GGYRCC 2 cut(s) 301, 1096
BanII GRGCYC 3 cut(s) 151, 919, 1082
BauI CACGAG 1 cut(s) 1004
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 3 cut(s) 151, 566, 919
BbvI GCAGC 3 cut(s) 405, 672, 778
BccI CCATC 3 cut(s) 14, 469, 678
BceAI ACGGC 2 cut(s) 372, 822
BciT130I CCWGG 2 cut(s) 209, 1075
BclI TGATCA 2 cut(s) 405, 828
BcnI CCSGG 3 cut(s) 228, 276, 277
BcoDI GTCTC 1 cut(s) 967
BcuI ACTAGT 1 cut(s) 181
BfaI CTAG 5 cut(s) 182, 508, 725, 757, 1030
BfmI CTRYAG 1 cut(s) 1112
BfuAI ACCTGC 1 cut(s) 507
BglI GCCNNNNNGGC 1 cut(s) 1086
BisI GCNGC 3 cut(s) 419, 661, 767
BlsI GCNGC 3 cut(s) 420, 662, 768
Bme1390I CCNGG 5 cut(s) 209, 228, 276, 277, 1075
Bme18I GGWCC 2 cut(s) 667, 687
BmeT110I CYCGRG 2 cut(s) 275, 985
BmgT120I GGNCC 3 cut(s) 204, 667, 687
BmiI GGNNCC 5 cut(s) 206, 303, 689, 1079, 1098
BmrFI CCNGG 5 cut(s) 209, 228, 276, 277, 1075
BmrI ACTGGG 1 cut(s) 578
BmsI GCATC 6 cut(s) 43, 221, 712, 732, 753, 1107
BmuI ACTGGG 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 791
BpuMI CCSGG 3 cut(s) 228, 276, 277
BsaJI CCNNGG 7 cut(s) 118, 207, 274, 275, 359, 719, 861
BsaXI ACNNNNNCTCC 2 cut(s) 1069, 1099
Bsc4I CCNNNNNNNGG 4 cut(s) 258, 262, 365, 725
Bse118I RCCGGY 2 cut(s) 258, 262
Bse1I ACTGG 4 cut(s) 520, 573, 947, 1192
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 2 cut(s) 209, 1075
BseDI CCNNGG 7 cut(s) 118, 207, 274, 275, 359, 719, 861
BseGI GGATG 3 cut(s) 58, 157, 212
BseLI CCNNNNNNNGG 4 cut(s) 258, 262, 365, 725
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 3 cut(s) 338, 503, 1141
BseNI ACTGG 4 cut(s) 520, 573, 947, 1192
BseX3I CGGCCG 1 cut(s) 260
BseXI GCAGC 3 cut(s) 405, 672, 778
Bsh1285I CGRYCG 1 cut(s) 263
BshFI GGCC 5 cut(s) 95, 205, 262, 358, 536
BshNI GGYRCC 2 cut(s) 301, 1096
BsiEI CGRYCG 1 cut(s) 263
BsiHKAI GWGCWC 3 cut(s) 151, 566, 919
BsiHKCI CYCGRG 2 cut(s) 275, 985
BsiSI CCGG 4 cut(s) 228, 259, 263, 276
BslFI GGGAC 4 cut(s) 631, 673, 879, 1038
BslI CCNNNNNNNGG 4 cut(s) 258, 262, 365, 725
BsmAI GTCTC 1 cut(s) 967
BsmFI GGGAC 4 cut(s) 631, 673, 879, 1038
BsnI GGCC 5 cut(s) 95, 205, 262, 358, 536
BsoBI CYCGRG 2 cut(s) 275, 985
Bsp1286I GDGCHC 4 cut(s) 151, 566, 919, 1082
Bsp1407I TGTACA 1 cut(s) 1103
Bsp143I GATC 4 cut(s) 248, 405, 489, 828
Bsp19I CCATGG 2 cut(s) 118, 719
BspACI CCGC 5 cut(s) 41, 233, 256, 299, 1022
BspANI GGCC 5 cut(s) 95, 205, 262, 358, 536
BspCNI CTCAG 3 cut(s) 339, 504, 1140
BspLI GGNNCC 5 cut(s) 206, 303, 689, 1079, 1098
BspMAI CTGCAG 1 cut(s) 1116
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 1 cut(s) 243
BspQI GCTCTTC 1 cut(s) 118
BspT107I GGYRCC 2 cut(s) 301, 1096
BsrBI CCGCTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 549
BsrFI RCCGGY 2 cut(s) 258, 262
BsrGI TGTACA 1 cut(s) 1103
BsrI ACTGG 4 cut(s) 520, 573, 947, 1192
BssAI RCCGGY 2 cut(s) 258, 262
BssECI CCNNGG 7 cut(s) 118, 207, 274, 275, 359, 719, 861
BssMI GATC 4 cut(s) 248, 405, 489, 828
BssSI CACGAG 1 cut(s) 1004
BssT1I CCWWGG 4 cut(s) 118, 359, 719, 861
Bst2BI CACGAG 1 cut(s) 1004
Bst2UI CCWGG 2 cut(s) 209, 1075
Bst4CI ACNGT 2 cut(s) 88, 671
Bst6I CTCTTC 1 cut(s) 118
BstAPI GCANNNNNTGC 1 cut(s) 139
BstAUI TGTACA 1 cut(s) 1103
BstC8I GCNNGC 3 cut(s) 244, 260, 264
BstDEI CTNAG 5 cut(s) 347, 465, 512, 818, 1127
BstDSI CCRYGG 2 cut(s) 118, 719
BstEII GGTNACC 2 cut(s) 855, 1051
BstF5I GGATG 3 cut(s) 58, 157, 212
BstHHI GCGC 2 cut(s) 58, 550
BstKTI GATC 4 cut(s) 251, 408, 492, 831
BstMAI GTCTC 1 cut(s) 967
BstMBI GATC 4 cut(s) 248, 405, 489, 828
BstMCI CGRYCG 1 cut(s) 263
BstNI CCWGG 2 cut(s) 209, 1075
BstPI GGTNACC 2 cut(s) 855, 1051
BstSCI CCNGG 5 cut(s) 207, 226, 274, 275, 1073
BstSFI CTRYAG 1 cut(s) 1112
BstV1I GCAGC 3 cut(s) 405, 672, 778
BstV2I GAAGAC 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 544
BstZI CGGCCG 1 cut(s) 260
BsuRI GGCC 5 cut(s) 95, 205, 262, 358, 536
BtgI CCRYGG 2 cut(s) 118, 719
BtsCI GGATG 3 cut(s) 58, 157, 212
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 4 cut(s) 149, 389, 527, 566
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 3 cut(s) 244, 260, 264
CaiI CAGNNNCTG 1 cut(s) 643
CfoI GCGC 2 cut(s) 58, 550
Cfr10I RCCGGY 2 cut(s) 258, 262
Cfr13I GGNCC 3 cut(s) 204, 667, 687
Cfr9I CCCGGG 1 cut(s) 275
CseI GACGC 2 cut(s) 722, 1059
Csp6I GTAC 2 cut(s) 1097, 1104
CviAII CATG 6 cut(s) 91, 119, 409, 720, 746, 1067
CviQI GTAC 2 cut(s) 1097, 1104
DdeI CTNAG 5 cut(s) 347, 465, 512, 818, 1127
DpnI GATC 4 cut(s) 250, 407, 491, 830
DpnII GATC 4 cut(s) 248, 405, 489, 828
EaeI YGGCCR 4 cut(s) 93, 260, 356, 534
EagI CGGCCG 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
EciI GGCGGA 2 cut(s) 30, 245
Ecl136II GAGCTC 2 cut(s) 149, 917
EclXI CGGCCG 1 cut(s) 260
Eco130I CCWWGG 4 cut(s) 118, 359, 719, 861
Eco24I GRGCYC 3 cut(s) 151, 919, 1082
Eco47I GGWCC 2 cut(s) 667, 687
Eco52I CGGCCG 1 cut(s) 260
Eco53kI GAGCTC 2 cut(s) 149, 917
Eco57I CTGAAG 1 cut(s) 344
Eco88I CYCGRG 2 cut(s) 275, 985
Eco91I GGTNACC 2 cut(s) 855, 1051
EcoICRI GAGCTC 2 cut(s) 149, 917
EcoO65I GGTNACC 2 cut(s) 855, 1051
EcoRII CCWGG 2 cut(s) 207, 1073
EcoT14I CCWWGG 4 cut(s) 118, 359, 719, 861
EcoT22I ATGCAT 1 cut(s) 747
EcoT38I GRGCYC 3 cut(s) 151, 919, 1082
ErhI CCWWGG 4 cut(s) 118, 359, 719, 861
FaeI CATG 6 cut(s) 94, 122, 412, 723, 749, 1070
FaqI GGGAC 4 cut(s) 631, 673, 879, 1038
FatI CATG 6 cut(s) 90, 118, 408, 719, 745, 1066
FauI CCCGC 1 cut(s) 1015
FbaI TGATCA 2 cut(s) 405, 828
Fnu4HI GCNGC 3 cut(s) 419, 661, 767
FokI GGATG 3 cut(s) 65, 144, 199
FriOI GRGCYC 3 cut(s) 151, 919, 1082
Fsp4HI GCNGC 3 cut(s) 419, 661, 767
FspAI RTGCGCAY 1 cut(s) 57
FspBI CTAG 5 cut(s) 182, 508, 725, 757, 1030
FspI TGCGCA 1 cut(s) 57
GlaI GCGC 2 cut(s) 57, 549
GluI GCNGC 3 cut(s) 419, 661, 767
GsuI CTGGAG 1 cut(s) 791
HaeIII GGCC 5 cut(s) 95, 205, 262, 358, 536
HapII CCGG 4 cut(s) 228, 259, 263, 276
HgaI GACGC 2 cut(s) 722, 1059
HhaI GCGC 2 cut(s) 58, 550
Hin1II CATG 6 cut(s) 94, 122, 412, 723, 749, 1070
Hin6I GCGC 2 cut(s) 56, 548
HinP1I GCGC 2 cut(s) 56, 548
HinfI GANTC 2 cut(s) 1131, 1163
HpaII CCGG 4 cut(s) 228, 259, 263, 276
HphI GGTGA 3 cut(s) 415, 488, 957
Hpy166II GTNNAC 1 cut(s) 1106
Hpy188I TCNGA 8 cut(s) 112, 217, 313, 585, 683, 873, 894, 1130
Hpy188III TCNNGA 7 cut(s) 322, 473, 737, 901, 985, 1041, 1172
Hpy8I GTNNAC 1 cut(s) 1106
HpyAV CCTTC 3 cut(s) 315, 725, 744
HpyCH4III ACNGT 2 cut(s) 88, 671
HpyCH4V TGCA 4 cut(s) 142, 745, 766, 1114
HpyF3I CTNAG 5 cut(s) 347, 465, 512, 818, 1127
Hsp92II CATG 6 cut(s) 94, 122, 412, 723, 749, 1070
HspAI GCGC 2 cut(s) 56, 548
KpnI GGTACC 1 cut(s) 1100
KroI GCCGGC 2 cut(s) 258, 262
KroNI GCCGGC 2 cut(s) 260, 264
Ksp22I TGATCA 2 cut(s) 405, 828
Kzo9I GATC 4 cut(s) 248, 405, 489, 828
LguI GCTCTTC 1 cut(s) 118
LmnI GCTCC 5 cut(s) 230, 313, 572, 772, 1077
Lsp1109I GCAGC 3 cut(s) 405, 672, 778
LweI GCATC 6 cut(s) 43, 221, 712, 732, 753, 1107
MaeI CTAG 5 cut(s) 182, 508, 725, 757, 1030
MaeIII GTNAC 5 cut(s) 21, 327, 396, 855, 1051
MalI GATC 4 cut(s) 250, 407, 491, 830
MbiI CCGCTC 1 cut(s) 233
MboI GATC 4 cut(s) 248, 405, 489, 828
MboII GAAGA 3 cut(s) 26, 99, 135
MhlI GDGCHC 4 cut(s) 151, 566, 919, 1082
MlsI TGGCCA 3 cut(s) 95, 358, 536
MluCI AATT 4 cut(s) 73, 807, 955, 965
MluNI TGGCCA 3 cut(s) 95, 358, 536
MlyI GAGTC 2 cut(s) 1140, 1172
Mox20I TGGCCA 3 cut(s) 95, 358, 536
Mph1103I ATGCAT 1 cut(s) 747
MroNI GCCGGC 2 cut(s) 258, 262
MscI TGGCCA 3 cut(s) 95, 358, 536
MseI TTAA 4 cut(s) 677, 878, 911, 1136
MslI CAYNNNNRTG 1 cut(s) 542
Msp20I TGGCCA 3 cut(s) 95, 358, 536
MspA1I CMGCKG 1 cut(s) 769
MspI CCGG 4 cut(s) 228, 259, 263, 276
MspR9I CCNGG 5 cut(s) 209, 228, 276, 277, 1075
MvaI CCWGG 2 cut(s) 209, 1075
NaeI GCCGGC 2 cut(s) 260, 264
NciI CCSGG 3 cut(s) 228, 276, 277
NcoI CCATGG 2 cut(s) 118, 719
NdeII GATC 4 cut(s) 248, 405, 489, 828
NgoMIV GCCGGC 2 cut(s) 258, 262
NlaIII CATG 6 cut(s) 94, 122, 412, 723, 749, 1070
NlaIV GGNNCC 5 cut(s) 206, 303, 689, 1079, 1098
NmuCI GTSAC 2 cut(s) 327, 396
NsbI TGCGCA 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 747
PaeR7I CTCGAG 1 cut(s) 985
PaqCI CACCTGC 1 cut(s) 507
PciSI GCTCTTC 1 cut(s) 118
PdiI GCCGGC 2 cut(s) 260, 264
PflFI GACNNNGTC 1 cut(s) 732
PfoI TCCNGGA 1 cut(s) 1073
PkrI GCNGC 3 cut(s) 420, 662, 768
PleI GAGTC 2 cut(s) 1139, 1171
PpsI GAGTC 2 cut(s) 1139, 1171
PsiI TTATAA 1 cut(s) 13
Psp124BI GAGCTC 2 cut(s) 151, 919
Psp6I CCWGG 2 cut(s) 207, 1073
PspEI GGTNACC 2 cut(s) 855, 1051
PspGI CCWGG 2 cut(s) 207, 1073
PspN4I GGNNCC 5 cut(s) 206, 303, 689, 1079, 1098
PspPI GGNCC 3 cut(s) 204, 667, 687
PstI CTGCAG 1 cut(s) 1116
PstNI CAGNNNCTG 1 cut(s) 643
PsyI GACNNNGTC 1 cut(s) 732
PvuII CAGCTG 1 cut(s) 769
RsaI GTAC 2 cut(s) 1098, 1105
RsaNI GTAC 2 cut(s) 1097, 1104
RseI CAYNNNNRTG 1 cut(s) 542
SacI GAGCTC 2 cut(s) 151, 919
SapI GCTCTTC 1 cut(s) 118
SaqAI TTAA 4 cut(s) 677, 878, 911, 1136
SatI GCNGC 3 cut(s) 419, 661, 767
Sau3AI GATC 4 cut(s) 248, 405, 489, 828
Sau96I GGNCC 3 cut(s) 204, 667, 687
SchI GAGTC 2 cut(s) 1140, 1172
ScrFI CCNGG 5 cut(s) 209, 228, 276, 277, 1075
SduI GDGCHC 4 cut(s) 151, 566, 919, 1082
SfaNI GCATC 6 cut(s) 43, 221, 712, 732, 753, 1107
SfcI CTRYAG 1 cut(s) 1112
Sfr274I CTCGAG 1 cut(s) 985
SinI GGWCC 2 cut(s) 667, 687
SlaI CTCGAG 1 cut(s) 985
SmaI CCCGGG 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 985
SmoI CTYRAG 1 cut(s) 985
SpeI ACTAGT 1 cut(s) 181
Sse9I AATT 4 cut(s) 73, 807, 955, 965
SsiI CCGC 5 cut(s) 41, 233, 256, 299, 1022
SspI AATATT 1 cut(s) 1207
SspMI CTAG 5 cut(s) 182, 508, 725, 757, 1030
SstI GAGCTC 2 cut(s) 151, 919
StyD4I CCNGG 5 cut(s) 207, 226, 274, 275, 1073
StyI CCWWGG 4 cut(s) 118, 359, 719, 861
TaaI ACNGT 2 cut(s) 88, 671
TaqI TCGA 4 cut(s) 986, 1040, 1184, 1194
TasI AATT 4 cut(s) 73, 807, 955, 965
TatI WGTACW 1 cut(s) 1103
Tru1I TTAA 4 cut(s) 677, 878, 911, 1136
Tru9I TTAA 4 cut(s) 677, 878, 911, 1136
TscAI CASTG 4 cut(s) 149, 389, 527, 573
TseFI GTSAC 2 cut(s) 327, 396
TseI GCWGC 3 cut(s) 418, 660, 766
Tsp45I GTSAC 2 cut(s) 327, 396
TspDTI ATGAA 3 cut(s) 146, 297, 806
TspGWI ACGGA 1 cut(s) 977
TspMI CCCGGG 1 cut(s) 275
TspRI CASTG 4 cut(s) 149, 389, 527, 573
Tth111I GACNNNGTC 1 cut(s) 732
VpaK11BI GGWCC 2 cut(s) 667, 687
XapI RAATTY 2 cut(s) 807, 955
XcmI CCANNNNNNNNNTGG 1 cut(s) 565
XhoI CTCGAG 1 cut(s) 985
XmaI CCCGGG 1 cut(s) 275
XspI CTAG 5 cut(s) 182, 508, 725, 757, 1030
Zsp2I ATGCAT 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.