Rorug06G0333900

Protein of unknown function (DUF1350)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013928
Physical Location & Seq
Reverse (-)
48642842 .. 48646952
4111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0333900.1

Sequence Viewer

Length: 1041 bp
ATGGTCCTTTCTCATGTAATTAAGTTTCACCCCAAGGTCCCCGGAGTTTGGATCTATGCTGCAGCTTGGGAATTTGACCATAACCTAAATGTCAATGCTGCTCGTCCTATAATGATGAAGGGATTGAGCGTTTGCAAAACTTCAGAAGATCTTAGGAATGAGTGTCTTCGAATGGATATGACATTCCTAAATAAACTAAAGGCTCAAAAGGTTGCTCTTGGAGAGGATGTGGGCACTCTGGACCGTACTCAGACACTTGCTGATCAGAAACAGTGGAGAGATGAGAATAAAGATCTATACATGCCCCTTAATCAAGAAACAGAAAACAATGAGGCTTGGGAACATAACCATAACTTAAATGCCAACGCTGCTCGTCCTATAATGATGAAGGGATTGGGCATTTGCAGAACTTCAGAAGATCTTTGGAATGAGTATCTTCGAATGGAAACATTCCTAAATAAACTAAAGACTCAAAAGGTTGCTCTTCGAGAGGATGACCGTACTCACACAAGTGCTGATGAGAAACAGTGGAGAGACAAAAATAAAGATTTATACACGCTCCTTAATCAAGAAAGAGAATACAGTGAAGGGTCAGATGCTGATAATGAGAAGTCAATCAACACAGTTATTAAGTTTCAAGAGCAAGGAAAAATACGAATTGACATGAAGCGAGACTTGCCAACAGAACCAGAGTATTCGGACTGGCTTGCAAGACTTGAATACAATCCTGCAAGCACACAGGAGATGAGTGAAGAAATCACACTTTCTCAGGTAGAAAAAGCAGTTCAGGTTTATGAGGTGGCTATTGAAGTTTTGCCTTCAGCCATAATATTCAACCAGTATGCAAAGTTTTTTATGCATGCCACTGCTCTACTAAAACGAGAAAACAACCTTGTCTGGTTTAGCCAGTCCATCTGCAGCTCTACTAGTTATATTTCACGTCTTTTAAGTGTTTTCAAAAAGGCTGAACAATGGGGTGTATCAACGAGGAACTTGCCTGTCAGCATATTTCATTGTATTGCAACTTGGAAGACTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1350

Protein Analysis

346

Amino Acids

40.21

Weight (kDa)

5.98

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43540 AT3G43540
fragaria_vesca FvH4_2g37050 FvH4_2g37050
malus_domestica MD08G1047000.v1.1
pyrus_communis pycom08g03940
rosa_chinensis RchiOBHm_Chr6g0304731
rosa_laevigata RLG00000010955
rosa_multiflora Rmu_co8515209.1_g000001
rosa_roxburghii Rroxscaffold_7G00163550
rosa_rugosa Rorug06G0333900 Rorug06G0334000
rosa_samantha Rh6AG445900 Rh6BG455800 Rh6CG459000 Rh6DG446000
rosa_wichuraiana Rw6G038790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 3 cut(s) 126, 396, 804
AfaI GTAC 2 cut(s) 247, 502
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 5 cut(s) 638, 719, 809, 835, 958
AhlI ACTAGT 1 cut(s) 926
AjiI CACGTC 1 cut(s) 941
AleI CACNNNNGTG 1 cut(s) 510
AluBI AGCT 2 cut(s) 65, 921
AluI AGCT 2 cut(s) 65, 921
Alw26I GTCTC 2 cut(s) 528, 666
AlwI GGATC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 599
ApeKI GCWGC 5 cut(s) 59, 62, 98, 368, 918
ApoI RAATTY 1 cut(s) 71
AspS9I GGNCC 3 cut(s) 4, 37, 241
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 20
AsuII TTCGAA 2 cut(s) 169, 439
AvaII GGWCC 3 cut(s) 4, 37, 241
BaeGI GKGCMC 1 cut(s) 236
BbsI GAAGAC 2 cut(s) 158, 1037
BbvI GCAGC 5 cut(s) 46, 74, 85, 355, 930
BccI CCATC 1 cut(s) 920
BcgI CGANNNNNNTGC 2 cut(s) 976, 1010
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 2 cut(s) 528, 666
BcuI ACTAGT 1 cut(s) 926
BfaI CTAG 1 cut(s) 927
BfmI CTRYAG 2 cut(s) 60, 916
BglII AGATCT 3 cut(s) 148, 292, 418
BisI GCNGC 5 cut(s) 60, 63, 99, 369, 919
BlsI GCNGC 5 cut(s) 61, 64, 100, 370, 920
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 3 cut(s) 4, 37, 241
BmgBI CACGTC 1 cut(s) 941
BmgT120I GGNCC 3 cut(s) 4, 37, 241
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 586
BpiI GAAGAC 2 cut(s) 158, 1037
Bpu14I TTCGAA 2 cut(s) 169, 439
BpuMI CCSGG 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 33, 40
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 4 cut(s) 707, 838, 907, 1039
BseDI CCNNGG 2 cut(s) 33, 40
BseGI GGATG 2 cut(s) 232, 499
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 263, 782
BseNI ACTGG 4 cut(s) 707, 838, 907, 1039
BseSI GKGCMC 1 cut(s) 236
BseXI GCAGC 5 cut(s) 46, 74, 85, 355, 930
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 528, 666
BsmFI GGGAC 1 cut(s) 23
Bsp119I TTCGAA 2 cut(s) 169, 439
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 5 cut(s) 51, 148, 262, 292, 418
BspCNI CTCAG 2 cut(s) 262, 781
BspLI GGNNCC 1 cut(s) 39
BspMAI CTGCAG 2 cut(s) 64, 920
BspPI GGATC 1 cut(s) 59
BspQI GCTCTTC 1 cut(s) 489
BspT104I TTCGAA 2 cut(s) 169, 439
BsrI ACTGG 4 cut(s) 707, 838, 907, 1039
BssECI CCNNGG 2 cut(s) 33, 40
BssMI GATC 5 cut(s) 51, 148, 262, 292, 418
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 6 cut(s) 245, 273, 500, 528, 584, 625
Bst6I CTCTTC 1 cut(s) 489
BstBI TTCGAA 2 cut(s) 169, 439
BstC8I GCNNGC 3 cut(s) 708, 733, 861
BstDEI CTNAG 3 cut(s) 152, 249, 768
BstF5I GGATG 2 cut(s) 232, 499
BstKTI GATC 5 cut(s) 54, 151, 265, 295, 421
BstMAI GTCTC 2 cut(s) 528, 666
BstMBI GATC 5 cut(s) 51, 148, 262, 292, 418
BstMWI GCNNNNNNNGC 2 cut(s) 368, 676
BstNSI RCATGY 2 cut(s) 304, 863
BstSCI CCNGG 1 cut(s) 40
BstSFI CTRYAG 2 cut(s) 60, 916
BstSLI GKGCMC 1 cut(s) 236
BstV1I GCAGC 5 cut(s) 46, 74, 85, 355, 930
BstV2I GAAGAC 2 cut(s) 158, 1037
BstX2I RGATCY 4 cut(s) 51, 148, 292, 418
BstYI RGATCY 4 cut(s) 51, 148, 292, 418
BtrI CACGTC 1 cut(s) 941
BtsCI GGATG 2 cut(s) 232, 499
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 4 cut(s) 278, 533, 589, 864
Cac8I GCNNGC 3 cut(s) 708, 733, 861
CaiI CAGNNNCTG 1 cut(s) 599
Cfr13I GGNCC 3 cut(s) 4, 37, 241
Csp6I GTAC 2 cut(s) 246, 501
CviAII CATG 4 cut(s) 14, 301, 664, 860
CviJI RGCY 9 cut(s) 65, 203, 335, 706, 803, 824, 906, 921, 965
CviKI_1 RGCY 9 cut(s) 65, 203, 335, 706, 803, 824, 906, 921, 965
CviQI GTAC 2 cut(s) 246, 501
DdeI CTNAG 3 cut(s) 152, 249, 768
DpnI GATC 5 cut(s) 53, 150, 264, 294, 420
DpnII GATC 5 cut(s) 51, 148, 262, 292, 418
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 33
Eco47I GGWCC 3 cut(s) 4, 37, 241
Eco57I CTGAAG 3 cut(s) 126, 396, 804
EcoO109I RGGNCCY 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 861
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 4 cut(s) 17, 304, 667, 863
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FaqI GGGAC 1 cut(s) 23
FatI CATG 4 cut(s) 13, 300, 663, 859
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 5 cut(s) 60, 63, 99, 369, 919
FokI GGATG 2 cut(s) 239, 506
Fsp4HI GCNGC 5 cut(s) 60, 63, 99, 369, 919
FspBI CTAG 1 cut(s) 927
GluI GCNGC 5 cut(s) 60, 63, 99, 369, 919
HapII CCGG 1 cut(s) 42
Hin1II CATG 4 cut(s) 17, 304, 667, 863
HinfI GANTC 1 cut(s) 469
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 6 cut(s) 145, 252, 267, 415, 595, 700
Hpy188III TCNNGA 5 cut(s) 239, 314, 488, 569, 638
HpyAV CCTTC 4 cut(s) 112, 382, 581, 828
HpyCH4III ACNGT 6 cut(s) 245, 273, 500, 528, 584, 625
HpyCH4IV ACGT 1 cut(s) 940
HpyCH4V TGCA 9 cut(s) 62, 135, 405, 710, 731, 845, 859, 918, 1022
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 676
HpyF3I CTNAG 3 cut(s) 152, 249, 768
HpySE526I ACGT 1 cut(s) 940
Hsp92II CATG 4 cut(s) 17, 304, 667, 863
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 5 cut(s) 51, 148, 262, 292, 418
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 1 cut(s) 564
Lsp1109I GCAGC 5 cut(s) 46, 74, 85, 355, 930
LweI GCATC 1 cut(s) 586
MaeI CTAG 1 cut(s) 927
MaeII ACGT 1 cut(s) 940
MalI GATC 5 cut(s) 53, 150, 264, 294, 420
MboI GATC 5 cut(s) 51, 148, 262, 292, 418
MboII GAAGA 6 cut(s) 158, 158, 428, 428, 476, 764
MflI RGATCY 4 cut(s) 51, 148, 292, 418
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 3 cut(s) 18, 71, 657
MlyI GAGTC 1 cut(s) 463
MnlI CCTC 5 cut(s) 217, 325, 484, 790, 981
Mph1103I ATGCAT 1 cut(s) 861
MseI TTAA 6 cut(s) 21, 309, 356, 564, 630, 947
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 368, 676
NciI CCSGG 1 cut(s) 42
NdeII GATC 5 cut(s) 51, 148, 262, 292, 418
NlaIII CATG 4 cut(s) 17, 304, 667, 863
NlaIV GGNNCC 1 cut(s) 39
NsiI ATGCAT 1 cut(s) 861
NspI RCATGY 2 cut(s) 304, 863
NspV TTCGAA 2 cut(s) 169, 439
OliI CACNNNNGTG 1 cut(s) 510
PaeI GCATGC 1 cut(s) 863
PciSI GCTCTTC 1 cut(s) 489
PkrI GCNGC 5 cut(s) 61, 64, 100, 370, 920
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PpuMI RGGWCCY 1 cut(s) 37
Psp5II RGGWCCY 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 3 cut(s) 4, 37, 241
PspPPI RGGWCCY 1 cut(s) 37
PstI CTGCAG 2 cut(s) 64, 920
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 4 cut(s) 51, 148, 292, 418
RsaI GTAC 2 cut(s) 247, 502
RsaNI GTAC 2 cut(s) 246, 501
RseI CAYNNNNRTG 1 cut(s) 510
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 6 cut(s) 21, 309, 356, 564, 630, 947
SatI GCNGC 5 cut(s) 60, 63, 99, 369, 919
Sau3AI GATC 5 cut(s) 51, 148, 262, 292, 418
Sau96I GGNCC 3 cut(s) 4, 37, 241
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 236
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 2 cut(s) 60, 916
SfuI TTCGAA 2 cut(s) 169, 439
SinI GGWCC 3 cut(s) 4, 37, 241
SmiMI CAYNNNNRTG 1 cut(s) 510
SpeI ACTAGT 1 cut(s) 926
SphI GCATGC 1 cut(s) 863
Sse9I AATT 3 cut(s) 18, 71, 657
SspI AATATT 1 cut(s) 831
SspMI CTAG 1 cut(s) 927
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 6 cut(s) 245, 273, 500, 528, 584, 625
TaiI ACGT 1 cut(s) 943
TaqI TCGA 3 cut(s) 169, 439, 487
TasI AATT 3 cut(s) 18, 71, 657
Tru1I TTAA 6 cut(s) 21, 309, 356, 564, 630, 947
Tru9I TTAA 6 cut(s) 21, 309, 356, 564, 630, 947
TscAI CASTG 4 cut(s) 278, 533, 589, 871
TseI GCWGC 5 cut(s) 59, 62, 98, 368, 918
TspDTI ATGAA 4 cut(s) 131, 401, 680, 1001
TspRI CASTG 4 cut(s) 278, 533, 589, 871
VpaK11BI GGWCC 3 cut(s) 4, 37, 241
XapI RAATTY 1 cut(s) 71
XceI RCATGY 2 cut(s) 304, 863
XspI CTAG 1 cut(s) 927
Zsp2I ATGCAT 1 cut(s) 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.