FvH4_2g38780

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012101
Physical Location & Seq
Reverse (-)
27994619 .. 27995875
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38780.t1

Sequence Viewer

Length: 1257 bp
ATGGGCTCCGTCTCTCTGAAGATCGGCGACGGCACCGCCAGATTCCGGCGCGCCACCCTCTGCTCCTCCGCCGTCAACATTCTGATGCTCTTCTCCGTCGTCACCACCAACCTCTTCGCCCTCTACGCCTTCACCTCCTCCTCCAACTCCCCAAAAGACCAACACCGCCTCCTCCTCCACCAAACCCACAAGAACATCTCCCTCATCTCCGAGCAGGTCTCCCTCATCCTCCGCGAGATCGACTCCTCCCAGAAGAAGCTCGCCCAGATGGAGAAGGACCTCCTCGGCTACGACAGCATCGATCTCACGCGCCCCAACACACCTACCGAGCTCAAAGCTTTCCTAAACCACCACACTCTCCCTCTCGGGAAAGACTCCAGAACCGGGATCACGGAAATGTTGGCCTCGGTGGGCCACTCTTGCGAGAAATCCGCGGAGCTGTTGTCCCAGTACATGAGCTACAAGCCCTCTGGGCCATGCCCCGATGACTGGAGTCTGGCCCAGAGGCTGATCCTCCGCGGATGTGAGCCACTTCCGCGGAGGAGGTGCTTTGCCAAGACAGTGCCTAAGGTTGGTTTGTCTAGTTTCCCGTTTTCGCTTTGGAAGAATGTTAGTGCTAAGAGTGTGACTTGGAGTGGTCTAGGGTGTAAGAATTTTGAGTGCTTGAGTAGTAAGAAGTTGAGTAGGGAATGCGTCGGTTGCTTTGATTTGGGTAGTGGGGCTGAGAAGCAGAGATTTGTTAAGGCTAGGAGCAAGAACGATTTTGTTATTGATGATGTGTTGGCTTTGGGAGGTGGAGGAATGAGAGTGGGGTTTGATATTGGAGGTGGGTCTGGCACTTTTGCTGCTAGGATGGCGGAGAGGAATGTGACTGTGATCACCAACACTTTGAACATTGATGCGCCTTATAGCGAGTTCATAGCTGCAAGAGGGCTGTTTCCGCTGTTCTTGAGCTTGGATCATAGATTTCCTTTCTATGATAATGTGTTTGATTTGGTTCATGCTGCGAGTGGATTGGATGTTGGTGGAAAGCCGGAGAAGTTTGAGTTCTTGATGTTTGATATCGATCGGATCTTGAGGCCTGGAGGTTTGTTTTGGTTAGACAACTTTCATTGTGCTAATGAAGAAAGGAAAAAGGACTTGACCAGATTGATCGAGAGGTTTGGATATAAAAAGCTGAAATGGGTGGTTGGAGTAGATACTGCATCAGGGTCAATTTACTTGTCTGCGGTTCTGCAAAAACCAGTTAGGGTATGA

Protein Analysis

419

Amino Acids

46.36

Weight (kDa)

9.19

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 265 - 373 2.5e-07 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27230 AT5G40830 AT5G40830 AT5G40830
fragaria_vesca FvH4_2g38780
malus_domestica MD08G1015600.v1.1 MD15G1014500.v1.1
prunus_persica Prupe.1G368400_v2.0.a1
pyrus_communis pycom15g01260
rosa_chinensis RchiOBHm_Chr6g0302531
rosa_laevigata RLG00000011165
rosa_multiflora Rmu_sc0008826.1_g000003
rosa_roxburghii Rroxscaffold_7G00165650
rosa_rugosa Rorug06G0314700
rosa_samantha Rh6AG428000 Rh6BG474700 Rh6CG440100 Rh6DG427100
rosa_wichuraiana Rw6G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 32
AccII CGCG 6 cut(s) 51, 234, 310, 434, 519, 538
AclWI GGATC 4 cut(s) 395, 505, 966, 1079
AcsI RAATTY 1 cut(s) 652
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 4 cut(s) 45, 384, 489, 572
AgsI TTSAA 1 cut(s) 892
AjnI CCWGG 1 cut(s) 1081
AluBI AGCT 8 cut(s) 259, 331, 338, 439, 459, 923, 954, 1177
AluI AGCT 8 cut(s) 259, 331, 338, 439, 459, 923, 954, 1177
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 16, 223
AlwI GGATC 4 cut(s) 395, 505, 966, 1079
AlwNI CAGNNNCTG 1 cut(s) 508
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 5 cut(s) 402, 412, 473, 498, 1079
ApeKI GCWGC 3 cut(s) 845, 923, 1004
ApoI RAATTY 1 cut(s) 652
AscI GGCGCGCC 1 cut(s) 49
AspLEI GCGC 4 cut(s) 51, 53, 312, 904
AspS9I GGNCC 4 cut(s) 277, 412, 473, 499
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 3 cut(s) 94, 124, 871
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 1 cut(s) 277
AxyI CCTNAGG 1 cut(s) 567
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 2 cut(s) 8, 333
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 3 cut(s) 832, 910, 991
BccI CCATC 2 cut(s) 262, 847
BceAI ACGGC 2 cut(s) 46, 56
BciT130I CCWGG 1 cut(s) 1083
BclI TGATCA 1 cut(s) 876
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 16, 223
BfaI CTAG 4 cut(s) 582, 641, 747, 849
BfuAI ACCTGC 1 cut(s) 205
BglI GCCNNNNNGGC 1 cut(s) 472
BisI GCNGC 3 cut(s) 846, 924, 1005
BlsI GCNGC 3 cut(s) 847, 925, 1006
Bme1390I CCNGG 2 cut(s) 385, 1083
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 4 cut(s) 277, 412, 473, 499
BmiI GGNNCC 2 cut(s) 7, 34
BmrFI CCNGG 2 cut(s) 385, 1083
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 4 cut(s) 75, 306, 889, 1214
BmuI ACTGGG 1 cut(s) 442
BoxI GACNNNNGTC 1 cut(s) 492
BplI GAGNNNNNCTC 4 cut(s) 203, 235, 227, 259
BpmI CTGGAG 3 cut(s) 361, 511, 1104
BpuEI CTTGAG 3 cut(s) 685, 970, 1096
BpuMI CCSGG 1 cut(s) 385
Bsa29I ATCGAT 2 cut(s) 300, 1065
BsaBI GATNNNNATC 1 cut(s) 1065
BsaI GGTCTC 1 cut(s) 223
BsaJI CCNNGG 5 cut(s) 283, 405, 432, 517, 536
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 428, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 384, 489, 572
Bse1I ACTGG 3 cut(s) 448, 494, 1244
Bse21I CCTNAGG 1 cut(s) 567
Bse8I GATNNNNATC 1 cut(s) 1065
BseBI CCWGG 1 cut(s) 1083
BseCI ATCGAT 2 cut(s) 300, 1065
BseDI CCNNGG 5 cut(s) 283, 405, 432, 517, 536
BseGI GGATG 4 cut(s) 225, 527, 858, 1024
BseJI GATNNNNATC 1 cut(s) 1065
BseLI CCNNNNNNNGG 4 cut(s) 45, 384, 489, 572
BseMII CTCAG 1 cut(s) 714
BseNI ACTGG 3 cut(s) 448, 494, 1244
BsePI GCGCGC 1 cut(s) 49
BseRI GAGGAG 8 cut(s) 55, 127, 130, 161, 164, 235, 272, 556
BseXI GCAGC 3 cut(s) 832, 910, 991
Bsh1236I CGCG 6 cut(s) 51, 234, 310, 434, 519, 538
Bsh1285I CGRYCG 1 cut(s) 1069
BshFI GGCC 5 cut(s) 404, 414, 475, 500, 1081
BshNI GGYRCC 1 cut(s) 32
BshVI ATCGAT 2 cut(s) 300, 1065
BsiEI CGRYCG 1 cut(s) 1069
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 3 cut(s) 46, 384, 1034
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 4 cut(s) 45, 384, 489, 572
BsmAI GTCTC 2 cut(s) 16, 223
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 695
BsnI GGCC 5 cut(s) 404, 414, 475, 500, 1081
Bso31I GGTCTC 1 cut(s) 223
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 2 cut(s) 8, 333
BspANI GGCC 5 cut(s) 404, 414, 475, 500, 1081
BspCNI CTCAG 1 cut(s) 715
BspDI ATCGAT 2 cut(s) 300, 1065
BspFNI CGCG 6 cut(s) 51, 234, 310, 434, 519, 538
BspLI GGNNCC 2 cut(s) 7, 34
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 4 cut(s) 395, 505, 966, 1079
BspQI GCTCTTC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 223
BsrI ACTGG 3 cut(s) 448, 494, 1244
BssECI CCNNGG 5 cut(s) 283, 405, 432, 517, 536
BssHII GCGCGC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 1083
Bst4CI ACNGT 2 cut(s) 562, 874
Bst6I CTCTTC 2 cut(s) 95, 119
BstC8I GCNNGC 2 cut(s) 51, 261
BstDEI CTNAG 3 cut(s) 567, 618, 723
BstDSI CCRYGG 3 cut(s) 432, 517, 536
BstF5I GGATG 4 cut(s) 225, 527, 858, 1024
BstFNI CGCG 6 cut(s) 51, 234, 310, 434, 519, 538
BstHHI GCGC 4 cut(s) 51, 53, 312, 904
BstMAI GTCTC 2 cut(s) 16, 223
BstMCI CGRYCG 1 cut(s) 1069
BstMWI GCNNNNNNNGC 8 cut(s) 125, 294, 420, 472, 535, 699, 854, 940
BstNI CCWGG 1 cut(s) 1083
BstPAI GACNNNNGTC 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 383, 1081
BstUI CGCG 6 cut(s) 51, 234, 310, 434, 519, 538
BstV1I GCAGC 3 cut(s) 832, 910, 991
BstX2I RGATCY 1 cut(s) 1071
BstYI RGATCY 1 cut(s) 1071
Bsu15I ATCGAT 2 cut(s) 300, 1065
Bsu36I CCTNAGG 1 cut(s) 567
BsuRI GGCC 5 cut(s) 404, 414, 475, 500, 1081
BsuTUI ATCGAT 2 cut(s) 300, 1065
BtgI CCRYGG 3 cut(s) 432, 517, 536
BtsCI GGATG 4 cut(s) 225, 527, 858, 1024
BtsIMutI CAGTG 1 cut(s) 567
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 51, 261
CaiI CAGNNNCTG 1 cut(s) 508
CfoI GCGC 4 cut(s) 51, 53, 312, 904
Cfr13I GGNCC 4 cut(s) 277, 412, 473, 499
Cfr42I CCGCGG 3 cut(s) 435, 520, 539
ClaI ATCGAT 2 cut(s) 300, 1065
CseI GACGC 1 cut(s) 682
Csp6I GTAC 1 cut(s) 451
CviAII CATG 3 cut(s) 454, 477, 1001
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 3 cut(s) 567, 618, 723
Eam1104I CTCTTC 2 cut(s) 95, 119
EarI CTCTTC 2 cut(s) 95, 119
EciI GGCGGA 2 cut(s) 58, 872
Ecl136II GAGCTC 1 cut(s) 331
Eco147I AGGCCT 1 cut(s) 1081
Eco24I GRGCYC 2 cut(s) 8, 333
Eco31I GGTCTC 1 cut(s) 223
Eco32I GATATC 1 cut(s) 1063
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 1081
EcoRV GATATC 1 cut(s) 1063
EcoT38I GRGCYC 2 cut(s) 8, 333
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 3 cut(s) 457, 480, 1004
FaiI YATR 9 cut(s) 455, 478, 909, 920, 963, 978, 1002, 1170, 1255
FaqI GGGAC 1 cut(s) 430
FatI CATG 3 cut(s) 453, 476, 1000
FbaI TGATCA 1 cut(s) 876
Fnu4HI GCNGC 3 cut(s) 846, 924, 1005
FokI GGATG 4 cut(s) 212, 534, 865, 1031
FriOI GRGCYC 2 cut(s) 8, 333
Fsp4HI GCNGC 3 cut(s) 846, 924, 1005
FspBI CTAG 4 cut(s) 582, 641, 747, 849
GlaI GCGC 4 cut(s) 50, 52, 311, 903
GluI GCNGC 3 cut(s) 846, 924, 1005
GsuI CTGGAG 3 cut(s) 361, 511, 1104
HaeIII GGCC 5 cut(s) 404, 414, 475, 500, 1081
HapII CCGG 3 cut(s) 46, 384, 1034
HgaI GACGC 1 cut(s) 682
HhaI GCGC 4 cut(s) 51, 53, 312, 904
Hin1II CATG 3 cut(s) 457, 480, 1004
Hin6I GCGC 4 cut(s) 49, 51, 310, 902
HinP1I GCGC 4 cut(s) 49, 51, 310, 902
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 4 cut(s) 42, 242, 374, 493
HpaII CCGG 3 cut(s) 46, 384, 1034
HphI GGTGA 3 cut(s) 94, 124, 871
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 4 cut(s) 18, 84, 211, 1071
Hpy188III TCNNGA 6 cut(s) 367, 378, 949, 1051, 1075, 1156
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 3 cut(s) 32, 101, 698
HpyAV CCTTC 2 cut(s) 139, 268
HpyCH4III ACNGT 2 cut(s) 562, 874
HpyCH4V TGCA 3 cut(s) 926, 1205, 1237
HpyF10VI GCNNNNNNNGC 8 cut(s) 125, 294, 420, 472, 535, 699, 854, 940
HpyF3I CTNAG 3 cut(s) 567, 618, 723
Hsp92II CATG 3 cut(s) 457, 480, 1004
HspAI GCGC 4 cut(s) 49, 51, 310, 902
Ksp22I TGATCA 1 cut(s) 876
KspI CCGCGG 3 cut(s) 435, 520, 539
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 4 cut(s) 11, 68, 436, 750
Lsp1109I GCAGC 3 cut(s) 832, 910, 991
LweI GCATC 4 cut(s) 75, 306, 889, 1214
MaeI CTAG 4 cut(s) 582, 641, 747, 849
MaeIII GTNAC 3 cut(s) 100, 625, 868
MboII GAAGA 6 cut(s) 31, 82, 106, 265, 616, 1136
MflI RGATCY 1 cut(s) 1071
MhlI GDGCHC 2 cut(s) 8, 333
MluCI AATT 2 cut(s) 652, 1215
MlyI GAGTC 3 cut(s) 236, 368, 502
MmeI TCCRAC 2 cut(s) 168, 1171
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 2 cut(s) 83, 395
MspA1I CMGCKG 4 cut(s) 434, 519, 538, 943
MspI CCGG 3 cut(s) 46, 384, 1034
MspR9I CCNGG 2 cut(s) 385, 1083
Mva1269I GAATGC 1 cut(s) 695
MvaI CCWGG 1 cut(s) 1083
MvnI CGCG 6 cut(s) 51, 234, 310, 434, 519, 538
MwoI GCNNNNNNNGC 8 cut(s) 125, 294, 420, 472, 535, 699, 854, 940
NciI CCSGG 1 cut(s) 385
NlaIII CATG 3 cut(s) 457, 480, 1004
NlaIV GGNNCC 2 cut(s) 7, 34
NmeAIII GCCGAG 1 cut(s) 264
NmuCI GTSAC 3 cut(s) 100, 625, 868
PalAI GGCGCGCC 1 cut(s) 49
PauI GCGCGC 1 cut(s) 49
PceI AGGCCT 1 cut(s) 1081
PciSI GCTCTTC 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PctI GAATGC 1 cut(s) 695
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 3 cut(s) 847, 925, 1006
Ple19I CGATCG 1 cut(s) 1069
PleI GAGTC 3 cut(s) 236, 368, 501
PpsI GAGTC 3 cut(s) 236, 368, 501
PpuMI RGGWCCY 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 492
Psp124BI GAGCTC 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 1081
PspGI CCWGG 1 cut(s) 1081
PspN4I GGNNCC 2 cut(s) 7, 34
PspPI GGNCC 4 cut(s) 277, 412, 473, 499
PspPPI RGGWCCY 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 508
PsuI RGATCY 1 cut(s) 1071
PteI GCGCGC 1 cut(s) 49
PvuI CGATCG 1 cut(s) 1069
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 2 cut(s) 83, 395
SacI GAGCTC 1 cut(s) 333
SacII CCGCGG 3 cut(s) 435, 520, 539
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 3 cut(s) 846, 924, 1005
Sau96I GGNCC 4 cut(s) 277, 412, 473, 499
SchI GAGTC 3 cut(s) 236, 368, 502
ScrFI CCNGG 2 cut(s) 385, 1083
SduI GDGCHC 2 cut(s) 8, 333
SfaNI GCATC 4 cut(s) 75, 306, 889, 1214
Sfr303I CCGCGG 3 cut(s) 435, 520, 539
SgrBI CCGCGG 3 cut(s) 435, 520, 539
SgsI GGCGCGCC 1 cut(s) 49
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 2 cut(s) 83, 395
SmlI CTYRAG 3 cut(s) 664, 949, 1075
SmoI CTYRAG 3 cut(s) 664, 949, 1075
Sse9I AATT 2 cut(s) 652, 1215
SseBI AGGCCT 1 cut(s) 1081
SspMI CTAG 4 cut(s) 582, 641, 747, 849
SstI GAGCTC 1 cut(s) 333
StuI AGGCCT 1 cut(s) 1081
StyD4I CCNGG 2 cut(s) 383, 1081
TaaI ACNGT 2 cut(s) 562, 874
TaqI TCGA 4 cut(s) 240, 300, 1065, 1155
TasI AATT 2 cut(s) 652, 1215
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 1 cut(s) 567
TseFI GTSAC 3 cut(s) 100, 625, 868
TseI GCWGC 3 cut(s) 845, 923, 1004
Tsp45I GTSAC 3 cut(s) 100, 625, 868
TspDTI ATGAA 4 cut(s) 907, 989, 1100, 1137
TspGWI ACGGA 2 cut(s) 85, 407
TspRI CASTG 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 652
XspI CTAG 4 cut(s) 582, 641, 747, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.