Rh6DG427100

Putative S-adenosyl-L-methionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
60780915 .. 60782177
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG427100.1

Sequence Viewer

Length: 1263 bp
ATGGGCTCCGTCTCTCTGAAGATCGGCGACGGCACCGCCAGATTCCGACGCGCCACCCTGTGCTCCTCCGCCGTCAACATTCTGATGCTCTTCTCCGTCCTCACCACGAACCTCTTCGCCCTCTACGCCTTCACCTCCTCCTCCCAAAAAGACCAGCAGCAGCTCCTCCACCACACCCAGAAGAACATGTCCCTCATCTCCGAGCAGGTCTCCCTGATCCTCCGCGAGATCGACTCCTCCCAGAAGAAGCTCGCCCAGATGGAGAAGGACCTCCTGGGCTACCAAACCATCGATCTTTCCCGCCCCAATACGCCTAATGAGCTCAAGAGATTCCTCCAGCATCACACCCTTCCTCTCGGCAAAGACTCGAGAACCGGGATCACCGAGATGGTGGCCTCCGTGGGACATTCCTGCGAGAAATCCGGGGATTTGTTGTCCCAGTACATGAACTACAAGGTCTCTGGGCCCTGCCCCGACGACTGGAGCCTGGCCCAGAGGCTGATTCTTCGCGGATGCGAGCCTCTGCCGAGGAGGAGGTGCTTTGCCAAGACCGTGCCCAAGGTTGGTTTAACTACTTTTCCGCTTTCGCTTTGGAAAAATGTTAGTGCTAAGAGTGTTACTTGGAGCGGTCTAGGGTGTAAGAATTTCGAGTGCTTGAGTAGTAAGAAATTGAGTAGGGAGTGCGTTGGTTGCTTTGATTTGAGTAATGGGGGGGATGAGAAACAGAGATTTGTTAAGGCTAGGAGCAAGAATGATTTCGTGATTGATGATGTGCTGGCTTTGGGAGGTGGGGGAATGAGAGTGGGGTTTGATATTGGAGGTGGGTCTGGTACATTTGCTGCTACAATGGCGGAGAGGAATGTGACTGTGATCACCAACACTTTGAACATTGATGCCCCGTATAGCGAGTTCGTAGCTGCTCGAGGGCTGTTTCCGCTGTTTTTGAGCTTGGATCATAGATTTCCTTTCTATGATAATGTGTTTGATTTGGTTCATGCTGCGAGTGGATTGGATGTTGGTGGAAAACCGGACAAGTTTGAGTTCTTGATGTTTGATATCGATCGGATCTTGAGGCCTGGAGGTTTGTTTTGGTTAGACAACTTTCATTGTGCCAATGAAGAGAGGAAAAAGGACTTAACCAGGTTAATTGAGAGGTTTGGATATAAAAAGCTGAAATGGGTTGTTGCAGTAGATGCTGCATTAGGGTCAAGCAAATTTGAGGTTTACTTGTCCGCAGTTCTGCAAAAACCAGTAAGAGTATGA

Protein Analysis

420

Amino Acids

46.74

Weight (kDa)

9.12

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 263 - 371 1.2e-07 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012101)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 627
AccII CGCG 3 cut(s) 51, 225, 510
AclWI GGATC 4 cut(s) 211, 386, 960, 1073
AcsI RAATTY 2 cut(s) 643, 1214
AcuI CTGAAG 1 cut(s) 38
AdeI CACNNNGTG 1 cut(s) 60
AfaI GTAC 2 cut(s) 443, 832
AfiI CCNNNNNNNGG 2 cut(s) 480, 563
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 1 cut(s) 886
AjnI CCWGG 4 cut(s) 273, 486, 1075, 1139
AluBI AGCT 6 cut(s) 163, 250, 322, 917, 948, 1171
AluI AGCT 6 cut(s) 163, 250, 322, 917, 948, 1171
Alw21I GWGCWC 2 cut(s) 65, 324
Alw26I GTCTC 3 cut(s) 16, 214, 463
AlwI GGATC 4 cut(s) 211, 386, 960, 1073
AlwNI CAGNNNCTG 1 cut(s) 499
Ama87I CYCGRG 2 cut(s) 367, 921
AoxI GGCC 4 cut(s) 393, 464, 489, 1073
ApaI GGGCCC 1 cut(s) 468
ApeKI GCWGC 6 cut(s) 157, 160, 839, 917, 998, 1196
ApoI RAATTY 2 cut(s) 643, 1214
Asp700I GAANNNNTTC 2 cut(s) 113, 755
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 4 cut(s) 268, 464, 465, 490
AsuC2I CCSGG 2 cut(s) 376, 424
AsuHPI GGTGA 4 cut(s) 94, 124, 373, 865
AvaI CYCGRG 2 cut(s) 367, 921
AvaII GGWCC 1 cut(s) 268
BaeGI GKGCMC 2 cut(s) 468, 558
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 3 cut(s) 8, 324, 468
Bbv12I GWGCWC 2 cut(s) 65, 324
BbvI GCAGC 6 cut(s) 169, 172, 826, 904, 985, 1183
BccI CCATC 3 cut(s) 253, 296, 382
BceAI ACGGC 2 cut(s) 46, 56
BciT130I CCWGG 4 cut(s) 275, 488, 1077, 1141
BclI TGATCA 1 cut(s) 870
BcnI CCSGG 2 cut(s) 376, 424
BcoDI GTCTC 3 cut(s) 16, 214, 463
BfaI CTAG 2 cut(s) 632, 741
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 6 cut(s) 158, 161, 840, 918, 999, 1197
BlsI GCNGC 6 cut(s) 159, 162, 841, 919, 1000, 1198
Bme1390I CCNGG 6 cut(s) 275, 376, 424, 488, 1077, 1141
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 2 cut(s) 367, 921
BmgT120I GGNCC 4 cut(s) 268, 464, 465, 490
BmiI GGNNCC 4 cut(s) 7, 34, 466, 485
BmrFI CCNGG 6 cut(s) 275, 376, 424, 488, 1077, 1141
BmrI ACTGGG 1 cut(s) 433
BmsI GCATC 5 cut(s) 75, 349, 503, 883, 1183
BmuI ACTGGG 1 cut(s) 433
BplI GAGNNNNNCTC 4 cut(s) 194, 226, 218, 250
BpmI CTGGAG 3 cut(s) 320, 502, 1098
BpuEI CTTGAG 3 cut(s) 308, 676, 1090
BpuMI CCSGG 2 cut(s) 376, 424
Bsa29I ATCGAT 2 cut(s) 291, 1059
BsaBI GATNNNNATC 1 cut(s) 1059
BsaI GGTCTC 2 cut(s) 214, 463
BsaJI CCNNGG 5 cut(s) 274, 399, 423, 527, 558
BsaWI WCCGGW 1 cut(s) 1027
Bsc4I CCNNNNNNNGG 2 cut(s) 480, 563
Bse1I ACTGG 3 cut(s) 439, 485, 1250
Bse8I GATNNNNATC 1 cut(s) 1059
BseBI CCWGG 4 cut(s) 275, 488, 1077, 1141
BseCI ATCGAT 2 cut(s) 291, 1059
BseDI CCNNGG 5 cut(s) 274, 399, 423, 527, 558
BseGI GGATG 3 cut(s) 518, 721, 1018
BseJI GATNNNNATC 1 cut(s) 1059
BseLI CCNNNNNNNGG 2 cut(s) 480, 563
BseNI ACTGG 3 cut(s) 439, 485, 1250
BseRI GAGGAG 7 cut(s) 55, 127, 130, 155, 226, 544, 547
BseSI GKGCMC 2 cut(s) 468, 558
BseXI GCAGC 6 cut(s) 169, 172, 826, 904, 985, 1183
Bsh1236I CGCG 3 cut(s) 51, 225, 510
Bsh1285I CGRYCG 1 cut(s) 1063
BshFI GGCC 4 cut(s) 395, 466, 491, 1075
BshNI GGYRCC 1 cut(s) 32
BshVI ATCGAT 2 cut(s) 291, 1059
BsiEI CGRYCG 1 cut(s) 1063
BsiHKAI GWGCWC 2 cut(s) 65, 324
BsiHKCI CYCGRG 2 cut(s) 367, 921
BsiSI CCGG 3 cut(s) 375, 423, 1028
BslFI GGGAC 3 cut(s) 175, 417, 421
BslI CCNNNNNNNGG 2 cut(s) 480, 563
BsmAI GTCTC 3 cut(s) 16, 214, 463
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 3 cut(s) 175, 417, 421
BsnI GGCC 4 cut(s) 395, 466, 491, 1075
Bso31I GGTCTC 2 cut(s) 214, 463
BsoBI CYCGRG 2 cut(s) 367, 921
Bsp120I GGGCCC 1 cut(s) 464
Bsp1286I GDGCHC 5 cut(s) 8, 65, 324, 468, 558
Bsp143I GATC 9 cut(s) 21, 216, 228, 292, 378, 870, 952, 1060, 1065
BspANI GGCC 4 cut(s) 395, 466, 491, 1075
BspDI ATCGAT 2 cut(s) 291, 1059
BspFNI CGCG 3 cut(s) 51, 225, 510
BspLI GGNNCC 4 cut(s) 7, 34, 466, 485
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 4 cut(s) 211, 386, 960, 1073
BspQI GCTCTTC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 2 cut(s) 214, 463
BsrBI CCGCTC 1 cut(s) 627
BsrI ACTGG 3 cut(s) 439, 485, 1250
BssECI CCNNGG 5 cut(s) 274, 399, 423, 527, 558
BssMI GATC 9 cut(s) 21, 216, 228, 292, 378, 870, 952, 1060, 1065
BssT1I CCWWGG 1 cut(s) 558
Bst2UI CCWGG 4 cut(s) 275, 488, 1077, 1141
Bst4CI ACNGT 2 cut(s) 553, 868
Bst6I CTCTTC 3 cut(s) 95, 119, 1113
BstAPI GCANNNNNTGC 1 cut(s) 1193
BstC8I GCNNGC 3 cut(s) 252, 518, 777
BstDEI CTNAG 1 cut(s) 609
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 3 cut(s) 518, 721, 1018
BstFNI CGCG 3 cut(s) 51, 225, 510
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 9 cut(s) 24, 219, 231, 295, 381, 873, 955, 1063, 1068
BstMAI GTCTC 3 cut(s) 16, 214, 463
BstMBI GATC 9 cut(s) 21, 216, 228, 292, 378, 870, 952, 1060, 1065
BstMCI CGRYCG 1 cut(s) 1063
BstMWI GCNNNNNNNGC 6 cut(s) 125, 319, 690, 848, 934, 1193
BstNI CCWGG 4 cut(s) 275, 488, 1077, 1141
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 6 cut(s) 273, 374, 422, 486, 1075, 1139
BstSLI GKGCMC 2 cut(s) 468, 558
BstUI CGCG 3 cut(s) 51, 225, 510
BstV1I GCAGC 6 cut(s) 169, 172, 826, 904, 985, 1183
BstX2I RGATCY 1 cut(s) 1065
BstYI RGATCY 1 cut(s) 1065
Bsu15I ATCGAT 2 cut(s) 291, 1059
BsuRI GGCC 4 cut(s) 395, 466, 491, 1075
BsuTUI ATCGAT 2 cut(s) 291, 1059
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 3 cut(s) 518, 721, 1018
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 3 cut(s) 252, 518, 777
CaiI CAGNNNCTG 1 cut(s) 499
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 4 cut(s) 268, 464, 465, 490
ClaI ATCGAT 2 cut(s) 291, 1059
CseI GACGC 1 cut(s) 57
CsiI ACCWGGT 1 cut(s) 1139
Csp6I GTAC 2 cut(s) 442, 831
CviAII CATG 3 cut(s) 187, 445, 995
CviQI GTAC 2 cut(s) 442, 831
DdeI CTNAG 1 cut(s) 609
DpnI GATC 9 cut(s) 23, 218, 230, 294, 380, 872, 954, 1062, 1067
DpnII GATC 9 cut(s) 21, 216, 228, 292, 378, 870, 952, 1060, 1065
DraIII CACNNNGTG 1 cut(s) 60
Eam1104I CTCTTC 3 cut(s) 95, 119, 1113
EarI CTCTTC 3 cut(s) 95, 119, 1113
EciI GGCGGA 2 cut(s) 58, 866
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 558
Eco147I AGGCCT 1 cut(s) 1075
Eco24I GRGCYC 3 cut(s) 8, 324, 468
Eco31I GGTCTC 2 cut(s) 214, 463
Eco32I GATATC 1 cut(s) 1057
Eco47I GGWCC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 2 cut(s) 367, 921
EcoICRI GAGCTC 1 cut(s) 322
EcoO109I RGGNCCY 2 cut(s) 268, 465
EcoRII CCWGG 4 cut(s) 273, 486, 1075, 1139
EcoRV GATATC 1 cut(s) 1057
EcoT14I CCWWGG 1 cut(s) 558
EcoT38I GRGCYC 3 cut(s) 8, 324, 468
ErhI CCWWGG 1 cut(s) 558
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 3 cut(s) 190, 448, 998
FaiI YATR 8 cut(s) 188, 446, 903, 957, 972, 996, 1164, 1261
FaqI GGGAC 3 cut(s) 175, 417, 421
FatI CATG 3 cut(s) 186, 444, 994
FauI CCCGC 1 cut(s) 308
FbaI TGATCA 1 cut(s) 870
Fnu4HI GCNGC 6 cut(s) 158, 161, 840, 918, 999, 1197
FokI GGATG 3 cut(s) 525, 728, 1025
FriOI GRGCYC 3 cut(s) 8, 324, 468
Fsp4HI GCNGC 6 cut(s) 158, 161, 840, 918, 999, 1197
FspBI CTAG 2 cut(s) 632, 741
GlaI GCGC 1 cut(s) 52
GluI GCNGC 6 cut(s) 158, 161, 840, 918, 999, 1197
GsuI CTGGAG 3 cut(s) 320, 502, 1098
HaeIII GGCC 4 cut(s) 395, 466, 491, 1075
HapII CCGG 3 cut(s) 375, 423, 1028
HgaI GACGC 1 cut(s) 57
HhaI GCGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 190, 448, 998
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 5 cut(s) 42, 233, 330, 365, 502
HpaII CCGG 3 cut(s) 375, 423, 1028
HphI GGTGA 4 cut(s) 94, 124, 373, 865
Hpy166II GTNNAC 2 cut(s) 76, 1225
Hpy188I TCNGA 5 cut(s) 18, 47, 84, 202, 1065
Hpy188III TCNNGA 5 cut(s) 325, 369, 760, 1045, 1069
Hpy8I GTNNAC 2 cut(s) 76, 1225
Hpy99I CGWCG 3 cut(s) 32, 51, 479
HpyAV CCTTC 3 cut(s) 139, 259, 359
HpyCH4III ACNGT 2 cut(s) 553, 868
HpyCH4V TGCA 3 cut(s) 1187, 1199, 1243
HpyF10VI GCNNNNNNNGC 6 cut(s) 125, 319, 690, 848, 934, 1193
HpyF3I CTNAG 1 cut(s) 609
Hsp92II CATG 3 cut(s) 190, 448, 998
HspAI GCGC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 870
Kzo9I GATC 9 cut(s) 21, 216, 228, 292, 378, 870, 952, 1060, 1065
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 6 cut(s) 11, 68, 168, 483, 624, 744
Lsp1109I GCAGC 6 cut(s) 169, 172, 826, 904, 985, 1183
LweI GCATC 5 cut(s) 75, 349, 503, 883, 1183
MabI ACCWGGT 1 cut(s) 1139
MaeI CTAG 2 cut(s) 632, 741
MaeIII GTNAC 2 cut(s) 616, 862
MalI GATC 9 cut(s) 23, 218, 230, 294, 380, 872, 954, 1062, 1067
MbiI CCGCTC 1 cut(s) 627
MboI GATC 9 cut(s) 21, 216, 228, 292, 378, 870, 952, 1060, 1065
MboII GAAGA 7 cut(s) 31, 82, 106, 193, 256, 497, 1130
MflI RGATCY 1 cut(s) 1065
MhlI GDGCHC 5 cut(s) 8, 65, 324, 468, 558
MluCI AATT 4 cut(s) 643, 668, 1146, 1214
MlyI GAGTC 2 cut(s) 227, 359
MmeI TCCRAC 1 cut(s) 70
MroXI GAANNNNTTC 2 cut(s) 113, 755
MseI TTAA 4 cut(s) 569, 735, 1136, 1145
MslI CAYNNNNRTG 2 cut(s) 83, 386
MspA1I CMGCKG 1 cut(s) 937
MspI CCGG 3 cut(s) 375, 423, 1028
MspR9I CCNGG 6 cut(s) 275, 376, 424, 488, 1077, 1141
MvaI CCWGG 4 cut(s) 275, 488, 1077, 1141
MvnI CGCG 3 cut(s) 51, 225, 510
MwoI GCNNNNNNNGC 6 cut(s) 125, 319, 690, 848, 934, 1193
NciI CCSGG 2 cut(s) 376, 424
NdeII GATC 9 cut(s) 21, 216, 228, 292, 378, 870, 952, 1060, 1065
NlaIII CATG 3 cut(s) 190, 448, 998
NlaIV GGNNCC 4 cut(s) 7, 34, 466, 485
NmeAIII GCCGAG 2 cut(s) 336, 552
NmuCI GTSAC 1 cut(s) 862
NspI RCATGY 1 cut(s) 190
PaeR7I CTCGAG 2 cut(s) 367, 921
PceI AGGCCT 1 cut(s) 1075
PciI ACATGT 1 cut(s) 186
PciSI GCTCTTC 1 cut(s) 95
PdmI GAANNNNTTC 2 cut(s) 113, 755
PfeI GAWTC 3 cut(s) 42, 330, 502
PkrI GCNGC 6 cut(s) 159, 162, 841, 919, 1000, 1198
Ple19I CGATCG 1 cut(s) 1063
PleI GAGTC 2 cut(s) 227, 359
PpsI GAGTC 2 cut(s) 227, 359
PpuMI RGGWCCY 1 cut(s) 268
PscI ACATGT 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 268
Psp6I CCWGG 4 cut(s) 273, 486, 1075, 1139
PspGI CCWGG 4 cut(s) 273, 486, 1075, 1139
PspN4I GGNNCC 4 cut(s) 7, 34, 466, 485
PspOMI GGGCCC 1 cut(s) 464
PspPI GGNCC 4 cut(s) 268, 464, 465, 490
PspPPI RGGWCCY 1 cut(s) 268
PspXI VCTCGAGB 1 cut(s) 921
PsrI GAACNNNNNNTAC 2 cut(s) 893, 925
PstNI CAGNNNCTG 1 cut(s) 499
PsuI RGATCY 1 cut(s) 1065
PvuI CGATCG 1 cut(s) 1063
RsaI GTAC 2 cut(s) 443, 832
RsaNI GTAC 2 cut(s) 442, 831
RseI CAYNNNNRTG 2 cut(s) 83, 386
SacI GAGCTC 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 4 cut(s) 569, 735, 1136, 1145
SatI GCNGC 6 cut(s) 158, 161, 840, 918, 999, 1197
Sau3AI GATC 9 cut(s) 21, 216, 228, 292, 378, 870, 952, 1060, 1065
Sau96I GGNCC 4 cut(s) 268, 464, 465, 490
SchI GAGTC 2 cut(s) 227, 359
ScrFI CCNGG 6 cut(s) 275, 376, 424, 488, 1077, 1141
SduI GDGCHC 5 cut(s) 8, 65, 324, 468, 558
SexAI ACCWGGT 1 cut(s) 1139
SfaNI GCATC 5 cut(s) 75, 349, 503, 883, 1183
Sfr274I CTCGAG 2 cut(s) 367, 921
SinI GGWCC 1 cut(s) 268
SlaI CTCGAG 2 cut(s) 367, 921
SmiMI CAYNNNNRTG 2 cut(s) 83, 386
SmlI CTYRAG 5 cut(s) 323, 367, 655, 921, 1069
SmoI CTYRAG 5 cut(s) 323, 367, 655, 921, 1069
Sse9I AATT 4 cut(s) 643, 668, 1146, 1214
SseBI AGGCCT 1 cut(s) 1075
SspMI CTAG 2 cut(s) 632, 741
SstI GAGCTC 1 cut(s) 324
StuI AGGCCT 1 cut(s) 1075
StyD4I CCNGG 6 cut(s) 273, 374, 422, 486, 1075, 1139
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 2 cut(s) 553, 868
TaqI TCGA 6 cut(s) 231, 291, 368, 648, 922, 1059
TasI AATT 4 cut(s) 643, 668, 1146, 1214
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 3 cut(s) 42, 330, 502
Tru1I TTAA 4 cut(s) 569, 735, 1136, 1145
Tru9I TTAA 4 cut(s) 569, 735, 1136, 1145
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 6 cut(s) 157, 160, 839, 917, 998, 1196
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 4 cut(s) 461, 983, 1094, 1131
TspGWI ACGGA 2 cut(s) 85, 388
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 2 cut(s) 643, 1214
XceI RCATGY 1 cut(s) 190
XhoI CTCGAG 2 cut(s) 367, 921
XmnI GAANNNNTTC 2 cut(s) 113, 755
XspI CTAG 2 cut(s) 632, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.