Rmu_sc0008826.1_g000003

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008826.1
OG0012101
Physical Location & Seq
Reverse (-)
7652 .. 8836
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008826.1_g000003.1.cds

Sequence Viewer

Length: 1185 bp
atgctcttctccgtcctcaccacgaacctcttcgccctctacgccttcacctcctccccaaaagaccagcaacacgcccagcacctcctccaccacacccagaagaacatgtccctcatctccgagcaggtctccctcatcctccgcgagatcgactcctcccagaagaagctcgcccagatggagaaggacctcttgggctaccaaaccatcgatctttcccgccccaatacacctaatgagctcaagacattcctccagcatcacacccttcctctcggcaaagactcgagaaccgggatcaccgagatggtggcctccgtgggacattcctgcgagaaatccgcggatttcttgtcccagtacatgaactacaagctctctgcgccctgccccgacgactggagcctggcccagaggctgatccttcgcggatgcgagcctctgccgaggaggaggtgctttgccaagaccgtgcgcaaggttggtttaactacttttccgctttcgctttggaaaaatgttagtgctaagagtgttacctggagcggcctagggtgtaagaatttcgagtgcttgagtagtaagaaattgagtagggagtgcgttggttgctttgatttgagtaatgggggggatgagaaactcagatttgtcaaggctaggagcaagaatgatttcgtgattgatgatgtgctggctttgggaggtgggggaatgagagtagggtttgatattggaggcgggtctggtacatttgctgctagaatggcggagaggaatgtgactgtgatcaccaacactttgaacattgatgccccctatagcgagttcatagctgctagggggctgtttccgctgtttttgagcttggatcatagatttcctttctatgataatgtctttgatttggttcatgctgcgagtggattggatgttgctggaaaaccggacaagtttgagttcttgatgtttgatatcgatcggatcttgaggcctggaggtttgttttggttagacaactttcattgtgccaatgaagacaggaaaaaggacttaaccaggttaattgagaggtttggatataaaaagctgaaatgggttgttgcagtagatgctgcatcagggtcaagcaaatttgagttttacttgtccgccgttctgcaaaaaccagtaagagtatga

Protein Analysis

394

Amino Acids

44.21

Weight (kDa)

9.02

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27230 AT5G40830 AT5G40830 AT5G40830
fragaria_vesca FvH4_2g38780
malus_domestica MD08G1015600.v1.1 MD15G1014500.v1.1
prunus_persica Prupe.1G368400_v2.0.a1
pyrus_communis pycom15g01260
rosa_chinensis RchiOBHm_Chr6g0302531
rosa_laevigata RLG00000011165
rosa_multiflora Rmu_sc0008826.1_g000003
rosa_roxburghii Rroxscaffold_7G00165650
rosa_rugosa Rorug06G0314700
rosa_samantha Rh6AG428000 Rh6BG474700 Rh6CG440100 Rh6DG427100
rosa_wichuraiana Rw6G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 549
AccII CGCG 3 cut(s) 147, 347, 432
AclWI GGATC 4 cut(s) 308, 418, 882, 995
AcsI RAATTY 2 cut(s) 565, 1136
AfaI GTAC 2 cut(s) 365, 754
AfiI CCNNNNNNNGG 1 cut(s) 402
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 808
AjnI CCWGG 4 cut(s) 408, 542, 997, 1061
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 6 cut(s) 172, 244, 379, 839, 870, 1093
AluI AGCT 6 cut(s) 172, 244, 379, 839, 870, 1093
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 4 cut(s) 308, 418, 882, 995
AlwNI CAGNNNCTG 1 cut(s) 421
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 4 cut(s) 315, 411, 550, 995
ApeKI GCWGC 4 cut(s) 761, 839, 920, 1118
ApoI RAATTY 2 cut(s) 565, 1136
Asp700I GAANNNNTTC 2 cut(s) 29, 677
AspA2I CCTAGG 1 cut(s) 553
AspLEI GCGC 2 cut(s) 388, 480
AspS9I GGNCC 2 cut(s) 190, 412
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 4 cut(s) 10, 40, 295, 787
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 190
AvrII CCTAGG 1 cut(s) 553
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 1047
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 4 cut(s) 748, 826, 907, 1105
BccI CCATC 3 cut(s) 175, 218, 304
BceAI ACGGC 1 cut(s) 1142
BciT130I CCWGG 4 cut(s) 410, 544, 999, 1063
BclI TGATCA 1 cut(s) 792
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 4 cut(s) 554, 663, 765, 843
BfmI CTRYAG 1 cut(s) 823
BfuAI ACCTGC 1 cut(s) 118
BisI GCNGC 5 cut(s) 550, 762, 840, 921, 1119
BlnI CCTAGG 1 cut(s) 553
BlsI GCNGC 5 cut(s) 551, 763, 841, 922, 1120
Bme1390I CCNGG 5 cut(s) 298, 410, 544, 999, 1063
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 190, 412
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 5 cut(s) 298, 410, 544, 999, 1063
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 5 cut(s) 271, 425, 805, 1105, 1130
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 1047
BplI GAGNNNNNCTC 4 cut(s) 116, 148, 140, 172
BpmI CTGGAG 4 cut(s) 242, 424, 565, 1020
BpuEI CTTGAG 3 cut(s) 230, 598, 1012
BpuMI CCSGG 1 cut(s) 298
Bsa29I ATCGAT 2 cut(s) 213, 981
BsaBI GATNNNNATC 1 cut(s) 981
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 4 cut(s) 321, 345, 449, 553
BsaWI WCCGGW 1 cut(s) 949
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 3 cut(s) 361, 407, 1172
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 4 cut(s) 410, 544, 999, 1063
BseCI ATCGAT 2 cut(s) 213, 981
BseDI CCNNGG 4 cut(s) 321, 345, 449, 553
BseGI GGATG 4 cut(s) 138, 440, 643, 940
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 661
BseNI ACTGG 3 cut(s) 361, 407, 1172
BseRI GAGGAG 5 cut(s) 43, 77, 148, 466, 469
BseXI GCAGC 4 cut(s) 748, 826, 907, 1105
BseYI CCCAGC 1 cut(s) 78
Bsh1236I CGCG 3 cut(s) 147, 347, 432
Bsh1285I CGRYCG 1 cut(s) 985
BshFI GGCC 4 cut(s) 317, 413, 552, 997
BshVI ATCGAT 2 cut(s) 213, 981
BsiEI CGRYCG 1 cut(s) 985
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 2 cut(s) 297, 950
BslFI GGGAC 3 cut(s) 97, 339, 343
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 1 cut(s) 136
BsmFI GGGAC 3 cut(s) 97, 339, 343
BsnI GGCC 4 cut(s) 317, 413, 552, 997
Bso31I GGTCTC 1 cut(s) 136
BsoBI CYCGRG 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 8 cut(s) 150, 214, 300, 423, 792, 874, 982, 987
BspANI GGCC 4 cut(s) 317, 413, 552, 997
BspCNI CTCAG 1 cut(s) 660
BspDI ATCGAT 2 cut(s) 213, 981
BspFNI CGCG 3 cut(s) 147, 347, 432
BspLI GGNNCC 1 cut(s) 407
BspMI ACCTGC 1 cut(s) 118
BspPI GGATC 4 cut(s) 308, 418, 882, 995
BspQI GCTCTTC 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 549
BsrI ACTGG 3 cut(s) 361, 407, 1172
BssECI CCNNGG 4 cut(s) 321, 345, 449, 553
BssMI GATC 8 cut(s) 150, 214, 300, 423, 792, 874, 982, 987
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 4 cut(s) 410, 544, 999, 1063
Bst4CI ACNGT 2 cut(s) 475, 790
Bst6I CTCTTC 2 cut(s) 11, 35
BstAPI GCANNNNNTGC 1 cut(s) 1115
BstC8I GCNNGC 3 cut(s) 174, 440, 699
BstDEI CTNAG 2 cut(s) 531, 647
BstDSI CCRYGG 2 cut(s) 321, 345
BstF5I GGATG 4 cut(s) 138, 440, 643, 940
BstFNI CGCG 3 cut(s) 147, 347, 432
BstHHI GCGC 2 cut(s) 388, 480
BstKTI GATC 8 cut(s) 153, 217, 303, 426, 795, 877, 985, 990
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 8 cut(s) 150, 214, 300, 423, 792, 874, 982, 987
BstMCI CGRYCG 1 cut(s) 985
BstMWI GCNNNNNNNGC 6 cut(s) 41, 385, 612, 770, 856, 1115
BstNI CCWGG 4 cut(s) 410, 544, 999, 1063
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 5 cut(s) 296, 408, 542, 997, 1061
BstSFI CTRYAG 1 cut(s) 823
BstUI CGCG 3 cut(s) 147, 347, 432
BstV1I GCAGC 4 cut(s) 748, 826, 907, 1105
BstV2I GAAGAC 1 cut(s) 1047
BstX2I RGATCY 1 cut(s) 987
BstYI RGATCY 1 cut(s) 987
Bsu15I ATCGAT 2 cut(s) 213, 981
BsuRI GGCC 4 cut(s) 317, 413, 552, 997
BsuTUI ATCGAT 2 cut(s) 213, 981
BtgI CCRYGG 2 cut(s) 321, 345
BtsCI GGATG 4 cut(s) 138, 440, 643, 940
BveI ACCTGC 1 cut(s) 118
Cac8I GCNNGC 3 cut(s) 174, 440, 699
CaiI CAGNNNCTG 1 cut(s) 421
CfoI GCGC 2 cut(s) 388, 480
Cfr13I GGNCC 2 cut(s) 190, 412
Cfr42I CCGCGG 1 cut(s) 348
ClaI ATCGAT 2 cut(s) 213, 981
CsiI ACCWGGT 1 cut(s) 1061
Csp6I GTAC 2 cut(s) 364, 753
CviAII CATG 3 cut(s) 109, 367, 917
CviQI GTAC 2 cut(s) 364, 753
DdeI CTNAG 2 cut(s) 531, 647
DpnI GATC 8 cut(s) 152, 216, 302, 425, 794, 876, 984, 989
DpnII GATC 8 cut(s) 150, 214, 300, 423, 792, 874, 982, 987
Eam1104I CTCTTC 2 cut(s) 11, 35
EarI CTCTTC 2 cut(s) 11, 35
EciI GGCGGA 2 cut(s) 788, 1144
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 553
Eco147I AGGCCT 1 cut(s) 997
Eco24I GRGCYC 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 136
Eco32I GATATC 1 cut(s) 979
Eco47I GGWCC 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 4 cut(s) 408, 542, 997, 1061
EcoRV GATATC 1 cut(s) 979
EcoT14I CCWWGG 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 3 cut(s) 112, 370, 920
FaiI YATR 9 cut(s) 110, 368, 825, 836, 879, 894, 918, 1086, 1183
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 3 cut(s) 97, 339, 343
FatI CATG 3 cut(s) 108, 366, 916
FauI CCCGC 2 cut(s) 230, 737
FbaI TGATCA 1 cut(s) 792
Fnu4HI GCNGC 5 cut(s) 550, 762, 840, 921, 1119
FokI GGATG 4 cut(s) 125, 447, 650, 947
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 5 cut(s) 550, 762, 840, 921, 1119
FspBI CTAG 4 cut(s) 554, 663, 765, 843
FspI TGCGCA 1 cut(s) 479
GlaI GCGC 2 cut(s) 387, 479
GluI GCNGC 5 cut(s) 550, 762, 840, 921, 1119
GsaI CCCAGC 1 cut(s) 82
GsuI CTGGAG 4 cut(s) 242, 424, 565, 1020
HaeIII GGCC 4 cut(s) 317, 413, 552, 997
HapII CCGG 2 cut(s) 297, 950
HhaI GCGC 2 cut(s) 388, 480
Hin1II CATG 3 cut(s) 112, 370, 920
Hin6I GCGC 2 cut(s) 386, 478
HinP1I GCGC 2 cut(s) 386, 478
HinfI GANTC 2 cut(s) 155, 287
HpaII CCGG 2 cut(s) 297, 950
HphI GGTGA 4 cut(s) 10, 40, 295, 787
Hpy188I TCNGA 3 cut(s) 124, 650, 987
Hpy188III TCNNGA 5 cut(s) 247, 291, 682, 967, 991
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 4 cut(s) 55, 181, 281, 437
HpyCH4III ACNGT 2 cut(s) 475, 790
HpyCH4V TGCA 3 cut(s) 1109, 1121, 1165
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 385, 612, 770, 856, 1115
HpyF3I CTNAG 2 cut(s) 531, 647
Hsp92II CATG 3 cut(s) 112, 370, 920
HspAI GCGC 2 cut(s) 386, 478
Ksp22I TGATCA 1 cut(s) 792
KspI CCGCGG 1 cut(s) 348
Kzo9I GATC 8 cut(s) 150, 214, 300, 423, 792, 874, 982, 987
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 3 cut(s) 405, 546, 666
Lsp1109I GCAGC 4 cut(s) 748, 826, 907, 1105
LweI GCATC 5 cut(s) 271, 425, 805, 1105, 1130
MabI ACCWGGT 1 cut(s) 1061
MaeI CTAG 4 cut(s) 554, 663, 765, 843
MaeIII GTNAC 2 cut(s) 538, 784
MalI GATC 8 cut(s) 152, 216, 302, 425, 794, 876, 984, 989
MbiI CCGCTC 1 cut(s) 549
MboI GATC 8 cut(s) 150, 214, 300, 423, 792, 874, 982, 987
MboII GAAGA 4 cut(s) 22, 115, 178, 1052
MflI RGATCY 1 cut(s) 987
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 4 cut(s) 565, 590, 1068, 1136
MlyI GAGTC 2 cut(s) 149, 281
MroXI GAANNNNTTC 2 cut(s) 29, 677
MseI TTAA 3 cut(s) 491, 1058, 1067
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 2 cut(s) 347, 859
MspI CCGG 2 cut(s) 297, 950
MspR9I CCNGG 5 cut(s) 298, 410, 544, 999, 1063
MvaI CCWGG 4 cut(s) 410, 544, 999, 1063
MvnI CGCG 3 cut(s) 147, 347, 432
MwoI GCNNNNNNNGC 6 cut(s) 41, 385, 612, 770, 856, 1115
NciI CCSGG 1 cut(s) 298
NdeII GATC 8 cut(s) 150, 214, 300, 423, 792, 874, 982, 987
NlaIII CATG 3 cut(s) 112, 370, 920
NlaIV GGNNCC 1 cut(s) 407
NmeAIII GCCGAG 2 cut(s) 258, 474
NmuCI GTSAC 1 cut(s) 784
NsbI TGCGCA 1 cut(s) 479
NspI RCATGY 1 cut(s) 112
PaeR7I CTCGAG 1 cut(s) 289
PceI AGGCCT 1 cut(s) 997
PciI ACATGT 1 cut(s) 108
PciSI GCTCTTC 1 cut(s) 11
PdmI GAANNNNTTC 2 cut(s) 29, 677
PkrI GCNGC 5 cut(s) 551, 763, 841, 922, 1120
Ple19I CGATCG 1 cut(s) 985
PleI GAGTC 2 cut(s) 149, 281
PpsI GAGTC 2 cut(s) 149, 281
PpuMI RGGWCCY 1 cut(s) 190
PscI ACATGT 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 4 cut(s) 408, 542, 997, 1061
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 4 cut(s) 408, 542, 997, 1061
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 2 cut(s) 190, 412
PspPPI RGGWCCY 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 987
PvuI CGATCG 1 cut(s) 985
RsaI GTAC 2 cut(s) 365, 754
RsaNI GTAC 2 cut(s) 364, 753
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 246
SacII CCGCGG 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 3 cut(s) 491, 1058, 1067
SatI GCNGC 5 cut(s) 550, 762, 840, 921, 1119
Sau3AI GATC 8 cut(s) 150, 214, 300, 423, 792, 874, 982, 987
Sau96I GGNCC 2 cut(s) 190, 412
SchI GAGTC 2 cut(s) 149, 281
ScrFI CCNGG 5 cut(s) 298, 410, 544, 999, 1063
SduI GDGCHC 1 cut(s) 246
SexAI ACCWGGT 1 cut(s) 1061
SfaNI GCATC 5 cut(s) 271, 425, 805, 1105, 1130
SfcI CTRYAG 1 cut(s) 823
Sfr274I CTCGAG 1 cut(s) 289
Sfr303I CCGCGG 1 cut(s) 348
SgrBI CCGCGG 1 cut(s) 348
SinI GGWCC 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 4 cut(s) 245, 289, 577, 991
SmoI CTYRAG 4 cut(s) 245, 289, 577, 991
Sse9I AATT 4 cut(s) 565, 590, 1068, 1136
SseBI AGGCCT 1 cut(s) 997
SspMI CTAG 4 cut(s) 554, 663, 765, 843
SstI GAGCTC 1 cut(s) 246
StuI AGGCCT 1 cut(s) 997
StyD4I CCNGG 5 cut(s) 296, 408, 542, 997, 1061
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 2 cut(s) 475, 790
TaqI TCGA 5 cut(s) 153, 213, 290, 570, 981
TasI AATT 4 cut(s) 565, 590, 1068, 1136
TatI WGTACW 1 cut(s) 363
TauI GCSGC 1 cut(s) 552
Tru1I TTAA 3 cut(s) 491, 1058, 1067
Tru9I TTAA 3 cut(s) 491, 1058, 1067
TseFI GTSAC 1 cut(s) 784
TseI GCWGC 4 cut(s) 761, 839, 920, 1118
Tsp45I GTSAC 1 cut(s) 784
TspDTI ATGAA 5 cut(s) 383, 823, 905, 1016, 1053
TspGWI ACGGA 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 2 cut(s) 565, 1136
XceI RCATGY 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 289
XmaJI CCTAGG 1 cut(s) 553
XmnI GAANNNNTTC 2 cut(s) 29, 677
XspI CTAG 4 cut(s) 554, 663, 765, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.