FvH4_2g38830

Protein RCC2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012326
Physical Location & Seq
Reverse (-)
28021214 .. 28025997
4784 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38830.t1

Sequence Viewer

Length: 1359 bp
ATGAATAAGGGGCAGCTGGGCCATGGAGATACGCTTCAGCGAGATAGGCCGACTGTAGTGTCTGAACTTTCAAAGTACAAAATTGTTGGAGCTGGATCAGGGAGGAGTCATACAGTTGTGGTTACGGAGGATGGCCATTCTCTGGCCTTTGGCTGGAATAAGCACGGACAGCTGGGTTCTGGTTCAGTGAAAAATGAAATTGAGGCATCCCCTGTTCGCTGTCAAGTTTCTGATGTTAAAAAGGCTACCTGTGGCGGTGACTTCACTGTTTGGTTATCTTCAGTTGAAGGAGCCTCTATCCTAACTGCAGGTCTTCCACAGTATGGGCAACTGGGCCATGGAACAGATAATGAGTATAACACTAAAGACAGCTCAGTGAGGCTTGCTTATGAAGCTCAACCACGCCCTAAAGCAATAGCTTCTCTAGCTGGGGAAACCATTGTGAAAGTCGCCTGTGGAACAAACCATACAGTGGCAGTGGATGCTAACGGCTATGTATATACGTGGGGCTTCGGTGGTTATGGAAGGCTTGGACATAGAGAGCAGAAGGATGAGTTTACTCCTCGTCGTGTTGATGTTTTCCAGAGGCAAAATATTCTGCCTCCTAATGCAGTGATATCAGCTGGCTCAATGAACTCGGCATGTACTGCAGGTGGAGGGCAGTTGTATATGTGGGGTAAAATTAAAAGCACAGGTGATGACTGGATGTATCCTAAACCACTCATGGATTTAAGTGGTTGGAATTTGCGTTGCATGGATTCAGGTGGCATGCACCATTTCGTTGGTGCTGATTCTTCCTGCATAAGTTGGGGCCACGCTCAGTATGGAGAGCTGGGATATGGCCCCAATGGACAGAAGTCTTCTGCAGTACCCAAAAAAGTAGACATTCTTGAGGGTATGCATGTTATTAGTGTTGCATGTGGCCAGAACCATTCCATGGTCATTGTTGACAGGACAACTATTGGGGACCAACTTGATCAGCTTGATGTTTATGATGGCAAAGCTTCTGCTGAAGGGAGTGAGGAACCACAGAATGAGGCTCCAGTTACTAAGCCAGCTCCTAAAAAGAGTGTTGCTAAGGCGTCTAGTAATTCCAAGAGGAAGAAGGCGAAAGAGTCTTCCGAGTCAGAAGATGAAGATGAGGATGAAGACGAAGACGAAGATGAAGATGGCAATGACAGTGAGGAGAGTGATGATGAACAGGTCAACGGCAAGAATTCTAGGCAACGTGGGAAGGCTTCTGGTAGAGGGCGAGGTAATGGGGCAAAACGTGGACGTGGCCGCCCTCCTTCAGCAAGTAAAAGCCCAAAGCCTGCAGCTGGGAAGACCGGTAAGAGGGGAAGGCCTCGCAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

453

Amino Acids

48.33

Weight (kDa)

6.87

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RCC1 PF00415 2 - 41 1.8e-06 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 2 - 93 1.2e-07 Alsin RCC1-like domain
WD40_RLD PF25390 3 - 318 3.4e-52 RCC1-like domain
RCC1_2 PF13540 33 - 57 9.8e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 44 - 90 7.7e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 101 - 160 5e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 147 - 175 2.3e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 163 - 215 4.9e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 268 - 315 3.6e-11 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19880
fragaria_vesca FvH4_2g38830 FvH4_2g38830
malus_domestica MD08G1015900.v1.1 MD15G1014900.v1.1
prunus_persica Prupe.1G369200_v2.0.a1 Prupe.1G369200_v2.0.a1
pyrus_communis pycom08g01390 pycom15g01290
rosa_chinensis RchiOBHm_Chr6g0302441
rosa_laevigata RLG00000011171
rosa_multiflora Rmu_sc0003633.1_g000040
rosa_roxburghii Rroxscaffold_7G00165780
rosa_rugosa Rorug06G0314300
rosa_samantha Rh6AG427200 Rh6BG475500 Rh6CG439400 Rh6DG426400
rosa_wichuraiana Rw6G036960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 641
AasI GACNNNNNNGTC 1 cut(s) 58
Acc36I ACCTGC 2 cut(s) 299, 641
AccB7I CCANNNNNTGG 4 cut(s) 142, 323, 472, 937
AccI GTMKAC 1 cut(s) 882
AciI CCGC 2 cut(s) 255, 1282
AclWI GGATC 1 cut(s) 103
AcoI YGGCCR 3 cut(s) 133, 922, 1279
AcsI RAATTY 2 cut(s) 742, 1216
AcuI CTGAAG 4 cut(s) 20, 264, 1032, 1275
AcyI GRCGYC 1 cut(s) 1082
AfaI GTAC 3 cut(s) 77, 646, 870
AfiI CCNNNNNNNGG 7 cut(s) 142, 153, 323, 472, 937, 1319, 1335
AgeI ACCGGT 1 cut(s) 1328
AgsI TTSAA 2 cut(s) 72, 287
AjiI CACGTC 1 cut(s) 1277
AlwI GGATC 1 cut(s) 103
ApeKI GCWGC 2 cut(s) 13, 1316
ApoI RAATTY 2 cut(s) 742, 1216
AsiGI ACCGGT 1 cut(s) 1328
AspS9I GGNCC 5 cut(s) 19, 334, 811, 842, 967
AsuHPI GGTGA 2 cut(s) 269, 707
AvaII GGWCC 1 cut(s) 967
BalI TGGCCA 2 cut(s) 135, 924
BbsI GAAGAC 6 cut(s) 305, 852, 1110, 1155, 1161, 1331
BbvI GCAGC 2 cut(s) 25, 1328
BccI CCATC 3 cut(s) 125, 989, 1163
BceAI ACGGC 2 cut(s) 505, 1225
BciVI GTATCC 1 cut(s) 720
BclI TGATCA 1 cut(s) 976
BfaI CTAG 3 cut(s) 425, 1086, 1221
BfmI CTRYAG 5 cut(s) 54, 306, 648, 864, 1314
BfuAI ACCTGC 2 cut(s) 299, 641
BfuI GTATCC 1 cut(s) 720
BisI GCNGC 3 cut(s) 14, 1282, 1317
BlsI GCNGC 3 cut(s) 15, 1283, 1318
Bme18I GGWCC 1 cut(s) 967
BmgBI CACGTC 1 cut(s) 1277
BmgT120I GGNCC 5 cut(s) 19, 334, 811, 842, 967
BmiI GGNNCC 6 cut(s) 292, 812, 844, 968, 1026, 1041
BmrI ACTGGG 1 cut(s) 341
BmsI GCATC 2 cut(s) 215, 472
BmuI ACTGGG 1 cut(s) 341
BoxI GACNNNNGTC 1 cut(s) 856
BpiI GAAGAC 6 cut(s) 305, 852, 1110, 1155, 1161, 1331
BpmI CTGGAG 1 cut(s) 1026
Bpu10I CCTNAGC 1 cut(s) 1077
BpuEI CTTGAG 1 cut(s) 911
BsaAI YACGTR 1 cut(s) 504
BsaHI GRCGYC 1 cut(s) 1082
BsaJI CCNNGG 3 cut(s) 22, 337, 936
BsaWI WCCGGW 1 cut(s) 1328
Bsc4I CCNNNNNNNGG 7 cut(s) 142, 153, 323, 472, 937, 1319, 1335
Bse118I RCCGGY 1 cut(s) 1328
Bse1I ACTGG 3 cut(s) 336, 707, 1043
Bse3DI GCAATG 1 cut(s) 1180
BseDI CCNNGG 3 cut(s) 22, 337, 936
BseGI GGATG 6 cut(s) 136, 206, 487, 556, 711, 1150
BseLI CCNNNNNNNGG 7 cut(s) 142, 153, 323, 472, 937, 1319, 1335
BseMI GCAATG 1 cut(s) 1180
BseMII CTCAG 2 cut(s) 387, 833
BseNI ACTGG 3 cut(s) 336, 707, 1043
BseRI GAGGAG 3 cut(s) 118, 552, 1199
BseXI GCAGC 2 cut(s) 25, 1328
BseYI CCCAGC 5 cut(s) 16, 172, 428, 832, 1319
BshTI ACCGGT 1 cut(s) 1328
BsiSI CCGG 1 cut(s) 1329
BslFI GGGAC 1 cut(s) 980
BslI CCNNNNNNNGG 7 cut(s) 142, 153, 323, 472, 937, 1319, 1335
BsmFI GGGAC 1 cut(s) 980
Bsp143I GATC 2 cut(s) 95, 976
Bsp19I CCATGG 3 cut(s) 22, 337, 936
BspACI CCGC 2 cut(s) 255, 1282
BspCNI CTCAG 2 cut(s) 386, 832
BspLI GGNNCC 6 cut(s) 292, 812, 844, 968, 1026, 1041
BspMAI CTGCAG 4 cut(s) 310, 652, 868, 1318
BspMI ACCTGC 2 cut(s) 299, 641
BspPI GGATC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 1180
BsrFI RCCGGY 1 cut(s) 1328
BsrI ACTGG 3 cut(s) 336, 707, 1043
BssAI RCCGGY 1 cut(s) 1328
BssECI CCNNGG 3 cut(s) 22, 337, 936
BssMI GATC 2 cut(s) 95, 976
BssNI GRCGYC 1 cut(s) 1082
BssT1I CCWWGG 3 cut(s) 22, 337, 936
Bst4CI ACNGT 6 cut(s) 55, 115, 268, 321, 472, 1181
BstACI GRCGYC 1 cut(s) 1082
BstAPI GCANNNNNTGC 2 cut(s) 482, 647
BstBAI YACGTR 1 cut(s) 504
BstC8I GCNNGC 5 cut(s) 384, 625, 770, 1056, 1314
BstDEI CTNAG 4 cut(s) 373, 819, 1050, 1077
BstDSI CCRYGG 3 cut(s) 22, 337, 936
BstF5I GGATG 6 cut(s) 136, 206, 487, 556, 711, 1150
BstKTI GATC 2 cut(s) 98, 979
BstMBI GATC 2 cut(s) 95, 976
BstMWI GCNNNNNNNGC 6 cut(s) 46, 169, 392, 425, 482, 647
BstNSI RCATGY 4 cut(s) 645, 772, 905, 921
BstPAI GACNNNNGTC 1 cut(s) 856
BstSFI CTRYAG 5 cut(s) 54, 306, 648, 864, 1314
BstV1I GCAGC 2 cut(s) 25, 1328
BstV2I GAAGAC 6 cut(s) 305, 852, 1110, 1155, 1161, 1331
BstXI CCANNNNNNTGG 1 cut(s) 782
BsuI GTATCC 1 cut(s) 720
BtgI CCRYGG 3 cut(s) 22, 337, 936
BtrI CACGTC 1 cut(s) 1277
BtsCI GGATG 6 cut(s) 136, 206, 487, 556, 711, 1150
BtsI GCAGTG 2 cut(s) 483, 618
BtsIMutI CAGTG 7 cut(s) 192, 264, 381, 477, 483, 618, 1186
BveI ACCTGC 2 cut(s) 299, 641
Cac8I GCNNGC 5 cut(s) 384, 625, 770, 1056, 1314
Cfr10I RCCGGY 1 cut(s) 1328
Cfr13I GGNCC 5 cut(s) 19, 334, 811, 842, 967
CseI GACGC 1 cut(s) 1071
Csp6I GTAC 3 cut(s) 76, 645, 869
CspAI ACCGGT 1 cut(s) 1328
CviAII CATG 9 cut(s) 23, 338, 642, 724, 754, 769, 902, 918, 937
CviQI GTAC 3 cut(s) 76, 645, 869
DdeI CTNAG 4 cut(s) 373, 819, 1050, 1077
DpnI GATC 2 cut(s) 97, 978
DpnII GATC 2 cut(s) 95, 976
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 3 cut(s) 133, 922, 1279
Eco130I CCWWGG 3 cut(s) 22, 337, 936
Eco147I AGGCCT 1 cut(s) 1345
Eco32I GATATC 1 cut(s) 618
Eco47I GGWCC 1 cut(s) 967
Eco57I CTGAAG 4 cut(s) 20, 264, 1032, 1275
EcoRI GAATTC 1 cut(s) 1216
EcoRV GATATC 1 cut(s) 618
EcoT14I CCWWGG 3 cut(s) 22, 337, 936
EcoT22I ATGCAT 1 cut(s) 903
ErhI CCWWGG 3 cut(s) 22, 337, 936
FaeI CATG 9 cut(s) 26, 341, 645, 727, 757, 772, 905, 921, 940
FaqI GGGAC 1 cut(s) 980
FatI CATG 9 cut(s) 22, 337, 641, 723, 753, 768, 901, 917, 936
FbaI TGATCA 1 cut(s) 976
FblI GTMKAC 1 cut(s) 882
Fnu4HI GCNGC 3 cut(s) 14, 1282, 1317
FokI GGATG 6 cut(s) 143, 193, 494, 563, 718, 1157
Fsp4HI GCNGC 3 cut(s) 14, 1282, 1317
FspBI CTAG 3 cut(s) 425, 1086, 1221
GluI GCNGC 3 cut(s) 14, 1282, 1317
GsaI CCCAGC 5 cut(s) 20, 176, 432, 836, 1323
GsuI CTGGAG 1 cut(s) 1026
HapII CCGG 1 cut(s) 1329
HgaI GACGC 1 cut(s) 1071
Hin1I GRCGYC 1 cut(s) 1082
Hin1II CATG 9 cut(s) 26, 341, 645, 727, 757, 772, 905, 921, 940
HincII GTYRAC 2 cut(s) 949, 1207
HindII GTYRAC 2 cut(s) 949, 1207
HindIII AAGCTT 1 cut(s) 1002
HinfI GANTC 5 cut(s) 106, 758, 791, 1115, 1124
HpaII CCGG 1 cut(s) 1329
HphI GGTGA 2 cut(s) 269, 707
Hpy166II GTNNAC 5 cut(s) 558, 883, 949, 1207, 1274
Hpy188I TCNGA 4 cut(s) 64, 232, 1123, 1129
Hpy188III TCNNGA 2 cut(s) 583, 890
Hpy8I GTNNAC 5 cut(s) 558, 883, 949, 1207, 1274
Hpy99I CGWCG 1 cut(s) 570
HpyAV CCTTC 8 cut(s) 281, 519, 541, 1007, 1099, 1228, 1299, 1335
HpyCH4III ACNGT 6 cut(s) 55, 115, 268, 321, 472, 1181
HpyCH4IV ACGT 4 cut(s) 503, 1228, 1270, 1276
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 169, 392, 425, 482, 647
HpyF3I CTNAG 4 cut(s) 373, 819, 1050, 1077
HpySE526I ACGT 4 cut(s) 503, 1228, 1270, 1276
Hsp92I GRCGYC 1 cut(s) 1082
Hsp92II CATG 9 cut(s) 26, 341, 645, 727, 757, 772, 905, 921, 940
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 2 cut(s) 95, 976
LmnI GCTCC 4 cut(s) 89, 290, 1045, 1063
Lsp1109I GCAGC 2 cut(s) 25, 1328
LweI GCATC 2 cut(s) 215, 472
MaeI CTAG 3 cut(s) 425, 1086, 1221
MaeII ACGT 4 cut(s) 503, 1228, 1270, 1276
MaeIII GTNAC 3 cut(s) 121, 257, 1045
MalI GATC 2 cut(s) 97, 978
MboI GATC 2 cut(s) 95, 976
MlsI TGGCCA 2 cut(s) 135, 924
MluCI AATT 6 cut(s) 81, 198, 681, 742, 1090, 1216
MluNI TGGCCA 2 cut(s) 135, 924
MlyI GAGTC 3 cut(s) 115, 1124, 1133
MmeI TCCRAC 2 cut(s) 67, 719
Mox20I TGGCCA 2 cut(s) 135, 924
Mph1103I ATGCAT 1 cut(s) 903
MscI TGGCCA 2 cut(s) 135, 924
MseI TTAA 3 cut(s) 237, 684, 731
Msp20I TGGCCA 2 cut(s) 135, 924
MspA1I CMGCKG 4 cut(s) 16, 172, 623, 1319
MspI CCGG 1 cut(s) 1329
MwoI GCNNNNNNNGC 6 cut(s) 46, 169, 392, 425, 482, 647
NcoI CCATGG 3 cut(s) 22, 337, 936
NdeII GATC 2 cut(s) 95, 976
NlaIII CATG 9 cut(s) 26, 341, 645, 727, 757, 772, 905, 921, 940
NlaIV GGNNCC 6 cut(s) 292, 812, 844, 968, 1026, 1041
NmeAIII GCCGAG 1 cut(s) 617
NmuCI GTSAC 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 903
NspI RCATGY 4 cut(s) 645, 772, 905, 921
PaeI GCATGC 1 cut(s) 772
PaqCI CACCTGC 1 cut(s) 641
PceI AGGCCT 1 cut(s) 1345
PfeI GAWTC 2 cut(s) 758, 791
PflMI CCANNNNNTGG 4 cut(s) 142, 323, 472, 937
PinAI ACCGGT 1 cut(s) 1328
PkrI GCNGC 3 cut(s) 15, 1283, 1318
PleI GAGTC 3 cut(s) 114, 1123, 1132
PpsI GAGTC 3 cut(s) 114, 1123, 1132
Ppu21I YACGTR 1 cut(s) 504
PshAI GACNNNNGTC 1 cut(s) 856
PspFI CCCAGC 5 cut(s) 16, 172, 428, 832, 1319
PspN4I GGNNCC 6 cut(s) 292, 812, 844, 968, 1026, 1041
PspPI GGNCC 5 cut(s) 19, 334, 811, 842, 967
PsrI GAACNNNNNNTAC 2 cut(s) 451, 483
PstI CTGCAG 4 cut(s) 310, 652, 868, 1318
PvuII CAGCTG 4 cut(s) 16, 172, 623, 1319
RsaI GTAC 3 cut(s) 77, 646, 870
RsaNI GTAC 3 cut(s) 76, 645, 869
SaqAI TTAA 3 cut(s) 237, 684, 731
SatI GCNGC 3 cut(s) 14, 1282, 1317
Sau3AI GATC 2 cut(s) 95, 976
Sau96I GGNCC 5 cut(s) 19, 334, 811, 842, 967
SchI GAGTC 3 cut(s) 115, 1124, 1133
SfaNI GCATC 2 cut(s) 215, 472
SfcI CTRYAG 5 cut(s) 54, 306, 648, 864, 1314
SinI GGWCC 1 cut(s) 967
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
SphI GCATGC 1 cut(s) 772
Sse9I AATT 6 cut(s) 81, 198, 681, 742, 1090, 1216
SseBI AGGCCT 1 cut(s) 1345
SsiI CCGC 2 cut(s) 255, 1282
SspI AATATT 1 cut(s) 595
SspMI CTAG 3 cut(s) 425, 1086, 1221
StuI AGGCCT 1 cut(s) 1345
StyI CCWWGG 3 cut(s) 22, 337, 936
TaaI ACNGT 6 cut(s) 55, 115, 268, 321, 472, 1181
TaiI ACGT 4 cut(s) 506, 1231, 1273, 1279
TasI AATT 6 cut(s) 81, 198, 681, 742, 1090, 1216
TatI WGTACW 2 cut(s) 75, 644
TauI GCSGC 1 cut(s) 1284
TfiI GAWTC 2 cut(s) 758, 791
Tru1I TTAA 3 cut(s) 237, 684, 731
Tru9I TTAA 3 cut(s) 237, 684, 731
TscAI CASTG 7 cut(s) 192, 271, 381, 477, 483, 618, 1186
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 2 cut(s) 13, 1316
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 8 cut(s) 17, 210, 405, 647, 1149, 1161, 1179, 1212
TspGWI ACGGA 2 cut(s) 140, 180
TspRI CASTG 7 cut(s) 192, 271, 381, 477, 483, 618, 1186
Van91I CCANNNNNTGG 4 cut(s) 142, 323, 472, 937
VpaK11BI GGWCC 1 cut(s) 967
XapI RAATTY 2 cut(s) 742, 1216
XceI RCATGY 4 cut(s) 645, 772, 905, 921
XcmI CCANNNNNNNNNTGG 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 882
XspI CTAG 3 cut(s) 425, 1086, 1221
Zsp2I ATGCAT 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.