Rh6DG426400

Protein RCC2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012326
Physical Location & Seq
Forward (+)
60735715 .. 60740646
4932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG426400.1

Sequence Viewer

Length: 1290 bp
ATGTGTAGGTACAAAATTGTTGGAGCTGGATCAGGGAAGAGTCATACAGTAGTGGTTACGGAGGACGGCCATTCTCTGGCCTTTGGCTGGAATAAGCACGGGCAGCTGGGTTCAGGCTCGGTAAAAAATGAAATTGAGGCATCCCCTGTTCGCTGTCAAGTTTCTGATGTTAAAACGGCTACCTGTGGCGGTGACTTCACTGTTTGGTTATCTTCTGTTGAAGGAGCTTCTATCCTAACTGCAGGTCTTCCACAGTATGGGCAACTCGGCCATGGAACAGATAATGAGTATAACACTAAAGACAGCTCAGTGAGGCTTGCTTATGAAGCTCAACCACGCCCTAAAGCAATAGCTTCTCTAGCTGGGGAAACCATTGTGAAAGTCGCTTGTGGAACAAATCATACAGTGGCAGTGGATGAAAAGGGCTATGTATATACGTGGGGCTTTGGTGGTTATGGAAGGCTTGGACATAGAGAGCAGAAGGATGAGTGGGCTCCTCGTCGTGTTGATGTTTTCCAGAGGCAAAATATTCTGCCTCCTAATGCAGTTATATCAGCTGGCTCAATGAACTCGGCATGTACTGCAGGTGGAGGGCAGTTGTATATGTGGGGTAAAATTAAAAGCACAGGTGATGACTGGATGTATCCTAAACCACTCATGGATTTAAGTGGTTGGAATTTGCGTTGCATGGATTCAGGCGGCATGCACCATTTTGTTGGTGCTGATTCTTCCTGCATAAGTTGGGGCCACGCTCAGTATGGAGAGCTGGGATATGGCCCCAATGGACAGAAGTCTTCTGCGGTACCCAAAAAAGTAGACATTCTTGAGGGTATGCATGTTATTAGTGTTGCATGTGGTCAGAACCATTCCATGGTAATTGTTGACAGGACTAATATTGGGGACCAACTTGATCAGCTTGATGTTTATGATGGCAAAGCTTCCGCTGAAGGGAGTGAGGAGCCAGAGAACGAGACTCCAGTAACTAAGCAAGCTCCTAAAAAGAGTGCTGCTAAGGCGTCTAGTAATTCCAAGAGGAAGAAGTCAAAAGAGTCTTCCGAGTCGGAAGATGAAGATGAAGATGAAGACGAAGACGAAAATGACAATGACAGTGAGGAGAGTGATGATGAACAGGTCAACGGCAAGTATTCTAGGCAACGAGGTGGGAAGGCTTCTGGTAAGGGGCGAGGTAATGGTGCTAAACGTGGACGTGGCCGCCCTCCTTCAGCAAGTAAAAGCCCAAAGCCTGCAGCAGGGAAGGCCGGTAAGAGAGGAAGGCCTCGCAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

429

Amino Acids

45.92

Weight (kDa)

6.84

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 6 - 173 1.2e-34 RCC1-like domain
RCC1 PF00415 22 - 68 2.1e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 79 - 138 4.6e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 125 - 153 2.9e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 141 - 193 9e-09 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 184 - 296 3.7e-13 RCC1-like domain
RCC1 PF00415 246 - 293 3.3e-11 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19880
fragaria_vesca FvH4_2g38830 FvH4_2g38830
malus_domestica MD08G1015900.v1.1 MD15G1014900.v1.1
prunus_persica Prupe.1G369200_v2.0.a1 Prupe.1G369200_v2.0.a1
pyrus_communis pycom08g01390 pycom15g01290
rosa_chinensis RchiOBHm_Chr6g0302441
rosa_laevigata RLG00000011171
rosa_multiflora Rmu_sc0003633.1_g000040
rosa_roxburghii Rroxscaffold_7G00165780
rosa_rugosa Rorug06G0314300
rosa_samantha Rh6AG427200 Rh6BG475500 Rh6CG439400 Rh6DG426400
rosa_wichuraiana Rw6G036960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 575
Acc36I ACCTGC 2 cut(s) 233, 575
Acc65I GGTACC 1 cut(s) 802
AccB1I GGYRCC 1 cut(s) 802
AccB7I CCANNNNNTGG 3 cut(s) 76, 257, 871
AccI GTMKAC 1 cut(s) 816
AciI CCGC 5 cut(s) 189, 699, 800, 942, 1213
AclWI GGATC 1 cut(s) 37
AcoI YGGCCR 3 cut(s) 67, 268, 1210
AcsI RAATTY 1 cut(s) 676
AcuI CTGAAG 2 cut(s) 966, 1206
AcyI GRCGYC 1 cut(s) 1016
AfaI GTAC 3 cut(s) 11, 580, 804
AfiI CCNNNNNNNGG 6 cut(s) 76, 87, 257, 871, 948, 1250
AgsI TTSAA 1 cut(s) 221
AjiI CACGTC 1 cut(s) 1208
Alw26I GTCTC 1 cut(s) 965
AlwI GGATC 1 cut(s) 37
AoxI GGCC 8 cut(s) 67, 78, 268, 745, 775, 1210, 1257, 1274
ApeKI GCWGC 3 cut(s) 103, 1007, 1247
ApoI RAATTY 1 cut(s) 676
Asp718I GGTACC 1 cut(s) 802
AspS9I GGNCC 3 cut(s) 745, 776, 901
AsuHPI GGTGA 2 cut(s) 203, 641
AvaII GGWCC 1 cut(s) 901
BanI GGYRCC 1 cut(s) 802
BanII GRGCYC 1 cut(s) 496
BbsI GAAGAC 5 cut(s) 239, 786, 1044, 1089, 1095
BbvI GCAGC 3 cut(s) 115, 994, 1259
BccI CCATC 1 cut(s) 923
BceAI ACGGC 3 cut(s) 82, 192, 1153
BciVI GTATCC 1 cut(s) 654
BclI TGATCA 1 cut(s) 910
BcoDI GTCTC 1 cut(s) 965
BfaI CTAG 3 cut(s) 359, 1020, 1149
BfmI CTRYAG 3 cut(s) 240, 582, 1245
BfuAI ACCTGC 2 cut(s) 233, 575
BfuI GTATCC 1 cut(s) 654
BisI GCNGC 5 cut(s) 104, 700, 1008, 1213, 1248
BlsI GCNGC 5 cut(s) 105, 701, 1009, 1214, 1249
Bme18I GGWCC 1 cut(s) 901
BmgBI CACGTC 1 cut(s) 1208
BmgT120I GGNCC 3 cut(s) 745, 776, 901
BmiI GGNNCC 6 cut(s) 495, 746, 778, 804, 902, 960
BmsI GCATC 1 cut(s) 149
BoxI GACNNNNGTC 1 cut(s) 790
BpiI GAAGAC 5 cut(s) 239, 786, 1044, 1089, 1095
BpmI CTGGAG 1 cut(s) 960
Bpu10I CCTNAGC 1 cut(s) 1011
BpuEI CTTGAG 1 cut(s) 845
BsaAI YACGTR 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 1016
BsaJI CCNNGG 2 cut(s) 271, 870
Bsc4I CCNNNNNNNGG 6 cut(s) 76, 87, 257, 871, 948, 1250
Bse118I RCCGGY 1 cut(s) 1259
Bse1I ACTGG 2 cut(s) 641, 977
BseDI CCNNGG 2 cut(s) 271, 870
BseGI GGATG 4 cut(s) 140, 421, 490, 645
BseLI CCNNNNNNNGG 6 cut(s) 76, 87, 257, 871, 948, 1250
BseMII CTCAG 2 cut(s) 321, 767
BseNI ACTGG 2 cut(s) 641, 977
BseRI GAGGAG 3 cut(s) 486, 971, 1127
BseXI GCAGC 3 cut(s) 115, 994, 1259
BseYI CCCAGC 3 cut(s) 106, 362, 766
BshFI GGCC 8 cut(s) 69, 80, 270, 747, 777, 1212, 1259, 1276
BshNI GGYRCC 1 cut(s) 802
BsiSI CCGG 1 cut(s) 1260
BslFI GGGAC 1 cut(s) 914
BslI CCNNNNNNNGG 6 cut(s) 76, 87, 257, 871, 948, 1250
BsmAI GTCTC 1 cut(s) 965
BsmFI GGGAC 1 cut(s) 914
BsnI GGCC 8 cut(s) 69, 80, 270, 747, 777, 1212, 1259, 1276
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 2 cut(s) 29, 910
Bsp19I CCATGG 2 cut(s) 271, 870
BspACI CCGC 5 cut(s) 189, 699, 800, 942, 1213
BspANI GGCC 8 cut(s) 69, 80, 270, 747, 777, 1212, 1259, 1276
BspCNI CTCAG 2 cut(s) 320, 766
BspLI GGNNCC 6 cut(s) 495, 746, 778, 804, 902, 960
BspMAI CTGCAG 3 cut(s) 244, 586, 1249
BspMI ACCTGC 2 cut(s) 233, 575
BspPI GGATC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 802
BsrFI RCCGGY 1 cut(s) 1259
BsrI ACTGG 2 cut(s) 641, 977
BssAI RCCGGY 1 cut(s) 1259
BssECI CCNNGG 2 cut(s) 271, 870
BssMI GATC 2 cut(s) 29, 910
BssNI GRCGYC 1 cut(s) 1016
BssT1I CCWWGG 2 cut(s) 271, 870
Bst4CI ACNGT 5 cut(s) 49, 202, 255, 406, 1109
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 1016
BstAPI GCANNNNNTGC 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 438
BstC8I GCNNGC 5 cut(s) 318, 559, 704, 990, 1245
BstDEI CTNAG 4 cut(s) 307, 753, 984, 1011
BstDSI CCRYGG 2 cut(s) 271, 870
BstENI CCTNNNNNAGG 1 cut(s) 1248
BstF5I GGATG 4 cut(s) 140, 421, 490, 645
BstKTI GATC 2 cut(s) 32, 913
BstMAI GTCTC 1 cut(s) 965
BstMBI GATC 2 cut(s) 29, 910
BstMWI GCNNNNNNNGC 6 cut(s) 103, 326, 359, 581, 1013, 1256
BstNSI RCATGY 4 cut(s) 579, 706, 839, 855
BstPAI GACNNNNGTC 1 cut(s) 790
BstSFI CTRYAG 3 cut(s) 240, 582, 1245
BstV1I GCAGC 3 cut(s) 115, 994, 1259
BstV2I GAAGAC 5 cut(s) 239, 786, 1044, 1089, 1095
BstXI CCANNNNNNTGG 1 cut(s) 716
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 8 cut(s) 69, 80, 270, 747, 777, 1212, 1259, 1276
BtgI CCRYGG 2 cut(s) 271, 870
BtrI CACGTC 1 cut(s) 1208
BtsCI GGATG 4 cut(s) 140, 421, 490, 645
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 5 cut(s) 198, 315, 411, 417, 1114
BveI ACCTGC 2 cut(s) 233, 575
Cac8I GCNNGC 5 cut(s) 318, 559, 704, 990, 1245
Cfr10I RCCGGY 1 cut(s) 1259
Cfr13I GGNCC 3 cut(s) 745, 776, 901
CseI GACGC 1 cut(s) 1005
Csp6I GTAC 3 cut(s) 10, 579, 803
CviAII CATG 8 cut(s) 272, 576, 658, 688, 703, 836, 852, 871
CviQI GTAC 3 cut(s) 10, 579, 803
DdeI CTNAG 4 cut(s) 307, 753, 984, 1011
DpnI GATC 2 cut(s) 31, 912
DpnII GATC 2 cut(s) 29, 910
EaeI YGGCCR 3 cut(s) 67, 268, 1210
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 271, 870
Eco147I AGGCCT 1 cut(s) 1276
Eco24I GRGCYC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 901
Eco57I CTGAAG 2 cut(s) 966, 1206
EcoNI CCTNNNNNAGG 1 cut(s) 1248
EcoT14I CCWWGG 2 cut(s) 271, 870
EcoT22I ATGCAT 1 cut(s) 837
EcoT38I GRGCYC 1 cut(s) 496
ErhI CCWWGG 2 cut(s) 271, 870
FaeI CATG 8 cut(s) 275, 579, 661, 691, 706, 839, 855, 874
FaqI GGGAC 1 cut(s) 914
FatI CATG 8 cut(s) 271, 575, 657, 687, 702, 835, 851, 870
FbaI TGATCA 1 cut(s) 910
FblI GTMKAC 1 cut(s) 816
Fnu4HI GCNGC 5 cut(s) 104, 700, 1008, 1213, 1248
FokI GGATG 4 cut(s) 127, 428, 497, 652
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 5 cut(s) 104, 700, 1008, 1213, 1248
FspBI CTAG 3 cut(s) 359, 1020, 1149
GluI GCNGC 5 cut(s) 104, 700, 1008, 1213, 1248
GsaI CCCAGC 3 cut(s) 110, 366, 770
GsuI CTGGAG 1 cut(s) 960
HaeIII GGCC 8 cut(s) 69, 80, 270, 747, 777, 1212, 1259, 1276
HapII CCGG 1 cut(s) 1260
HgaI GACGC 1 cut(s) 1005
Hin1I GRCGYC 1 cut(s) 1016
Hin1II CATG 8 cut(s) 275, 579, 661, 691, 706, 839, 855, 874
HincII GTYRAC 2 cut(s) 883, 1135
HindII GTYRAC 2 cut(s) 883, 1135
HindIII AAGCTT 1 cut(s) 936
HinfI GANTC 6 cut(s) 40, 692, 725, 973, 1049, 1058
HpaII CCGG 1 cut(s) 1260
HphI GGTGA 2 cut(s) 203, 641
Hpy166II GTNNAC 4 cut(s) 817, 883, 1135, 1205
Hpy188I TCNGA 4 cut(s) 166, 861, 1057, 1063
Hpy188III TCNNGA 2 cut(s) 517, 824
Hpy8I GTNNAC 4 cut(s) 817, 883, 1135, 1205
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 8 cut(s) 215, 453, 475, 941, 1159, 1230, 1249, 1266
HpyCH4III ACNGT 5 cut(s) 49, 202, 255, 406, 1109
HpyCH4IV ACGT 3 cut(s) 437, 1201, 1207
HpyCH4V TGCA 9 cut(s) 242, 545, 584, 687, 706, 735, 835, 851, 1247
HpyF10VI GCNNNNNNNGC 6 cut(s) 103, 326, 359, 581, 1013, 1256
HpyF3I CTNAG 4 cut(s) 307, 753, 984, 1011
HpySE526I ACGT 3 cut(s) 437, 1201, 1207
Hsp92I GRCGYC 1 cut(s) 1016
Hsp92II CATG 8 cut(s) 275, 579, 661, 691, 706, 839, 855, 874
KpnI GGTACC 1 cut(s) 806
Ksp22I TGATCA 1 cut(s) 910
Kzo9I GATC 2 cut(s) 29, 910
LmnI GCTCC 5 cut(s) 23, 224, 499, 958, 997
Lsp1109I GCAGC 3 cut(s) 115, 994, 1259
LweI GCATC 1 cut(s) 149
MaeI CTAG 3 cut(s) 359, 1020, 1149
MaeII ACGT 3 cut(s) 437, 1201, 1207
MaeIII GTNAC 3 cut(s) 55, 191, 979
MalI GATC 2 cut(s) 31, 912
MboI GATC 2 cut(s) 29, 910
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 6 cut(s) 15, 132, 615, 676, 876, 1024
MlyI GAGTC 4 cut(s) 49, 967, 1058, 1067
MmeI TCCRAC 2 cut(s) 653, 1041
Mph1103I ATGCAT 1 cut(s) 837
MseI TTAA 3 cut(s) 171, 618, 665
MspA1I CMGCKG 3 cut(s) 106, 557, 944
MspI CCGG 1 cut(s) 1260
MwoI GCNNNNNNNGC 6 cut(s) 103, 326, 359, 581, 1013, 1256
NcoI CCATGG 2 cut(s) 271, 870
NdeII GATC 2 cut(s) 29, 910
NlaIII CATG 8 cut(s) 275, 579, 661, 691, 706, 839, 855, 874
NlaIV GGNNCC 6 cut(s) 495, 746, 778, 804, 902, 960
NmeAIII GCCGAG 2 cut(s) 246, 551
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 837
NspI RCATGY 4 cut(s) 579, 706, 839, 855
PaeI GCATGC 1 cut(s) 706
PaqCI CACCTGC 1 cut(s) 575
PceI AGGCCT 1 cut(s) 1276
PfeI GAWTC 2 cut(s) 692, 725
PflMI CCANNNNNTGG 3 cut(s) 76, 257, 871
PkrI GCNGC 5 cut(s) 105, 701, 1009, 1214, 1249
PleI GAGTC 4 cut(s) 48, 967, 1057, 1066
PpsI GAGTC 4 cut(s) 48, 967, 1057, 1066
Ppu21I YACGTR 1 cut(s) 438
PshAI GACNNNNGTC 1 cut(s) 790
PspFI CCCAGC 3 cut(s) 106, 362, 766
PspN4I GGNNCC 6 cut(s) 495, 746, 778, 804, 902, 960
PspPI GGNCC 3 cut(s) 745, 776, 901
PsrI GAACNNNNNNTAC 2 cut(s) 385, 417
PstI CTGCAG 3 cut(s) 244, 586, 1249
PvuII CAGCTG 2 cut(s) 106, 557
RsaI GTAC 3 cut(s) 11, 580, 804
RsaNI GTAC 3 cut(s) 10, 579, 803
SaqAI TTAA 3 cut(s) 171, 618, 665
SatI GCNGC 5 cut(s) 104, 700, 1008, 1213, 1248
Sau3AI GATC 2 cut(s) 29, 910
Sau96I GGNCC 3 cut(s) 745, 776, 901
SchI GAGTC 4 cut(s) 49, 967, 1058, 1067
SduI GDGCHC 1 cut(s) 496
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 3 cut(s) 240, 582, 1245
SinI GGWCC 1 cut(s) 901
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
SphI GCATGC 1 cut(s) 706
Sse9I AATT 6 cut(s) 15, 132, 615, 676, 876, 1024
SseBI AGGCCT 1 cut(s) 1276
SsiI CCGC 5 cut(s) 189, 699, 800, 942, 1213
SspI AATATT 2 cut(s) 529, 895
SspMI CTAG 3 cut(s) 359, 1020, 1149
StuI AGGCCT 1 cut(s) 1276
StyI CCWWGG 2 cut(s) 271, 870
TaaI ACNGT 5 cut(s) 49, 202, 255, 406, 1109
TaiI ACGT 3 cut(s) 440, 1204, 1210
TasI AATT 6 cut(s) 15, 132, 615, 676, 876, 1024
TatI WGTACW 1 cut(s) 578
TauI GCSGC 2 cut(s) 702, 1215
TfiI GAWTC 2 cut(s) 692, 725
Tru1I TTAA 3 cut(s) 171, 618, 665
Tru9I TTAA 3 cut(s) 171, 618, 665
TscAI CASTG 5 cut(s) 205, 315, 411, 417, 1114
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 3 cut(s) 103, 1007, 1247
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 8 cut(s) 144, 339, 432, 581, 1083, 1089, 1095, 1140
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 5 cut(s) 205, 315, 411, 417, 1114
Van91I CCANNNNNTGG 3 cut(s) 76, 257, 871
VpaK11BI GGWCC 1 cut(s) 901
XagI CCTNNNNNAGG 1 cut(s) 1248
XapI RAATTY 1 cut(s) 676
XceI RCATGY 4 cut(s) 579, 706, 839, 855
XcmI CCANNNNNNNNNTGG 1 cut(s) 755
XmiI GTMKAC 1 cut(s) 816
XspI CTAG 3 cut(s) 359, 1020, 1149
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.