MD08G1015900.v1.1

Protein RCC2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012326
Physical Location & Seq
Reverse (-)
1247973 .. 1252533
4561 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1015900.v1.1.491

Sequence Viewer

Length: 1635 bp
ATGTCTGCGGTCGAGACGGGGAACAAGGTGGAGGATGGGGAGAATAAGCAGGTGGAGAAATCGGGAGAGCTTTTGTTCTGCGGAGGTACGTCTTGGGACGCCATTGGCCGCCGCAAGGGCGCCGTTGAAGGTAACTTGATCTCCCCCACGCGCCTCCGCCCTCTCGTTGACGTCGATATCCGATTCGTCGCCTCGGGTTGCTCTTCGTGTCATTGTGTGGCATTGGATGTCGAAGGGCGGTGCTATACTTGGGGTCGCAATGAGAAGGGGCAGCTGGGCCATGGCGATAGAATTCAGCGTGATAGGCCGACTGTAGTGTCTGAACTTTCAAAGTACAAAGTGGTTAGAGCTTCATCCGGGAAGAATCACACTGTAGTCGTTACTGAGGACGGGCATTCTTTTGCCTTTGGCTGGAATAAGCATGGACAGCTGGGTTCAGGTTCAACAAAAAATGAAGTTGAGGCTTCCCCTGTTCGCTGTCAAGTTGCTGAGGTTAAAAGTGTTGCTTGTGGGGGTGACTTCACTGTGTGGTTATCTAGGGTTGAAGGAGCTTCTATACTAACTGCAGGCCTTCCACAGTACGGCCAACTTGGGCATGGTACAGATAATGAGTATAATACTAAAGACAGCTCAGTGAGGCTTGCTTATGAAGCCCAACCACGCCCTAAAGCAATAGCTTCTCTAGCTGGGGAAAATATTGTGAAAGTTGCATGTGGAACAAATCATACAGTGGCAGTGGATGCAAATGGCTATGTTTATACGTGGGGCTTTGGTGGTTATGGAAGGCTTGGACATAGGGAGCAGAAGGATGAATGGGCTCCTCGTCGTGTTGATGTCTTTCAAAGGAATAATATTCTGCCTCCTGATGCCATTATTTCAGCTGGTGCTGTAAACTCTGCATGTACTGCAGGTGGAGGGCAATTGTATATGTGGGGTAAAATTAAGAATACAGGTGATGACTGGATGTATCCTAAACCACTCATGGATTTAAGTGGCTGGAATTTGCGTTGCATGGATTCAGGCAATATGCACCATTTCGTTGGTGCTGACTCCTCCTGCATAAGCTGGGGTCATGCTCAATATGGAGAGCTGGGATATGGCCCTATGGGACAGAAGTCTTCTGCAGTGCCCAAAAAGGTGGATATCCTTGAGGGTATGCATGTTATGAGTGTTGCATGTGGACTCGGCCATTCCATGGTCATTGTTGATAGAACAACTGTTGGTGACCGACTTGATCAGCTTGAGGTATATGATGGCAAAGCTTCTGTAGAAGGGAGCGAGGAACCTGTGAGTGCCGCTCCAGCCTCGAAGCAAACTCCTAAAAGGGGTGCTTCGAAAGCATCTGAGAATTCCAAGAGGAAGAAGTCAAAAGAACCTTCTGATTCGGAAGATGAAGAAGACAGTGATGAGCCTGATGAGGACAGTAATGGAAGCGATGATGAGGACAGTGGCGAGCAGGAACCTAAAAGGCAACGAGGTGGGAAGACTTCTGGTAGAGGTAGAGGCAATGGAGCTAAAAAGGCGGCAGCAGCTGAGGGAAAGCGCGGACGGGGTCGCCCTCCTGCAAATAAAAGCCCAAAACCTGCACCAGCAACAACTGGAACCGGTAAGAGAGGAAGGCCTCGCAAGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

545

Amino Acids

58.23

Weight (kDa)

8.14

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 18 - 176 3.6e-33 RCC1-like domain
RCC1 PF00415 78 - 127 1.6e-15 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 80 - 164 4.9e-11 Alsin RCC1-like domain
RCC1_2 PF13540 114 - 143 6.3e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 130 - 176 3.2e-09 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 165 - 281 9.9e-22 RCC1-like domain
RCC1 PF00415 187 - 246 3.4e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 233 - 261 2.9e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 249 - 285 2.5e-08 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 292 - 405 3.8e-11 RCC1-like domain
RCC1 PF00415 354 - 401 7.1e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19880
fragaria_vesca FvH4_2g38830 FvH4_2g38830
malus_domestica MD08G1015900.v1.1 MD15G1014900.v1.1
prunus_persica Prupe.1G369200_v2.0.a1 Prupe.1G369200_v2.0.a1
pyrus_communis pycom08g01390 pycom15g01290
rosa_chinensis RchiOBHm_Chr6g0302441
rosa_laevigata RLG00000011171
rosa_multiflora Rmu_sc0003633.1_g000040
rosa_roxburghii Rroxscaffold_7G00165780
rosa_rugosa Rorug06G0314300
rosa_samantha Rh6AG427200 Rh6BG475500 Rh6CG439400 Rh6DG426400
rosa_wichuraiana Rw6G036960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 40, 899
AasI GACNNNNNNGTC 1 cut(s) 316
AatII GACGTC 1 cut(s) 174
Acc36I ACCTGC 3 cut(s) 40, 899, 1591
AccB1I GGYRCC 1 cut(s) 119
AccB7I CCANNNNNTGG 1 cut(s) 1195
AccBSI CCGCTC 1 cut(s) 1298
AccII CGCG 2 cut(s) 151, 1545
AciI CCGC 9 cut(s) 8, 81, 109, 112, 157, 238, 1296, 1523, 1545
AcoI YGGCCR 3 cut(s) 106, 583, 1186
AcsI RAATTY 3 cut(s) 291, 1000, 1348
AcyI GRCGYC 3 cut(s) 99, 120, 171
AdeI CACNNNGTG 1 cut(s) 528
AfaI GTAC 5 cut(s) 88, 335, 581, 601, 904
AfiI CCNNNNNNNGG 5 cut(s) 115, 411, 581, 1195, 1325
AgeI ACCGGT 1 cut(s) 1604
AgsI TTSAA 5 cut(s) 128, 330, 444, 545, 842
Alw26I GTCTC 1 cut(s) 8
AlwNI CAGNNNCTG 1 cut(s) 1532
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 8 cut(s) 106, 277, 305, 568, 583, 1099, 1186, 1619
ApeKI GCWGC 3 cut(s) 271, 1526, 1529
ApoI RAATTY 3 cut(s) 291, 1000, 1348
AsiGI ACCGGT 1 cut(s) 1604
AspLEI GCGC 3 cut(s) 122, 153, 1545
AspS9I GGNCC 2 cut(s) 277, 1100
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 3 cut(s) 527, 965, 1235
AsuII TTCGAA 1 cut(s) 1334
AvaI CYCGRG 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 1131
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 820
BbsI GAAGAC 3 cut(s) 1110, 1404, 1490
BbvCI CCTCAGC 2 cut(s) 489, 1533
BbvI GCAGC 3 cut(s) 283, 1538, 1541
BccI CCATC 2 cut(s) 29, 1247
BceAI ACGGC 2 cut(s) 107, 598
BciVI GTATCC 1 cut(s) 978
BclI TGATCA 1 cut(s) 1234
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 2 cut(s) 537, 683
BfmI CTRYAG 6 cut(s) 312, 372, 564, 906, 1122, 1266
BfoI RGCGCY 1 cut(s) 123
BfuAI ACCTGC 3 cut(s) 40, 899, 1591
BfuI GTATCC 1 cut(s) 978
BglI GCCNNNNNGGC 1 cut(s) 117
BisI GCNGC 7 cut(s) 109, 112, 272, 1296, 1524, 1527, 1530
BlsI GCNGC 7 cut(s) 110, 113, 273, 1297, 1525, 1528, 1531
Bme1390I CCNGG 1 cut(s) 358
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 277, 1100
BmiI GGNNCC 5 cut(s) 121, 819, 1284, 1461, 1603
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 3 cut(s) 730, 856, 1349
BoxI GACNNNNGTC 1 cut(s) 1114
BpiI GAAGAC 3 cut(s) 1110, 1404, 1490
BplI GAGNNNNNCTC 2 cut(s) 1282, 1314
BpmI CTGGAG 1 cut(s) 1284
Bpu10I CCTNAGC 2 cut(s) 489, 1533
Bpu14I TTCGAA 1 cut(s) 1334
BpuEI CTTGAG 2 cut(s) 1169, 1262
BpuMI CCSGG 1 cut(s) 358
BsaAI YACGTR 1 cut(s) 762
BsaHI GRCGYC 3 cut(s) 99, 120, 171
BsaJI CCNNGG 3 cut(s) 192, 280, 1194
BsaWI WCCGGW 1 cut(s) 1604
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 411, 581, 1195, 1325
Bse118I RCCGGY 1 cut(s) 1604
Bse1I ACTGG 2 cut(s) 965, 1603
Bse3DI GCAATG 2 cut(s) 265, 1513
BseDI CCNNGG 3 cut(s) 192, 280, 1194
BseGI GGATG 6 cut(s) 40, 232, 353, 745, 814, 969
BseLI CCNNNNNNNGG 5 cut(s) 115, 411, 581, 1195, 1325
BseMI GCAATG 2 cut(s) 265, 1513
BseMII CTCAG 5 cut(s) 375, 480, 645, 1335, 1524
BseNI ACTGG 2 cut(s) 965, 1603
BseRI GAGGAG 2 cut(s) 810, 1042
BseSI GKGCMC 1 cut(s) 1131
BseXI GCAGC 3 cut(s) 283, 1538, 1541
BseYI CCCAGC 5 cut(s) 274, 430, 686, 1065, 1090
BsgI GTGCAG 1 cut(s) 1569
Bsh1236I CGCG 2 cut(s) 151, 1545
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 8 cut(s) 108, 279, 307, 570, 585, 1101, 1188, 1621
BshNI GGYRCC 1 cut(s) 119
BshTI ACCGGT 1 cut(s) 1604
BsiEI CGRYCG 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 2 cut(s) 357, 1605
BslFI GGGAC 2 cut(s) 110, 1122
BslI CCNNNNNNNGG 5 cut(s) 115, 411, 581, 1195, 1325
BsmAI GTCTC 1 cut(s) 8
BsmBI CGTCTC 1 cut(s) 8
BsmFI GGGAC 2 cut(s) 110, 1122
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 8 cut(s) 108, 279, 307, 570, 585, 1101, 1188, 1621
BsoBI CYCGRG 1 cut(s) 193
Bsp119I TTCGAA 1 cut(s) 1334
Bsp1286I GDGCHC 2 cut(s) 820, 1131
Bsp143I GATC 2 cut(s) 138, 1234
Bsp19I CCATGG 2 cut(s) 280, 1194
BspACI CCGC 9 cut(s) 8, 81, 109, 112, 157, 238, 1296, 1523, 1545
BspANI GGCC 8 cut(s) 108, 279, 307, 570, 585, 1101, 1188, 1621
BspCNI CTCAG 5 cut(s) 376, 481, 644, 1336, 1525
BspFNI CGCG 2 cut(s) 151, 1545
BspLI GGNNCC 5 cut(s) 121, 819, 1284, 1461, 1603
BspMAI CTGCAG 3 cut(s) 568, 910, 1126
BspMI ACCTGC 3 cut(s) 40, 899, 1591
BspQI GCTCTTC 1 cut(s) 208
BspT104I TTCGAA 1 cut(s) 1334
BspT107I GGYRCC 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 1298
BsrDI GCAATG 2 cut(s) 265, 1513
BsrFI RCCGGY 1 cut(s) 1604
BsrI ACTGG 2 cut(s) 965, 1603
BssAI RCCGGY 1 cut(s) 1604
BssECI CCNNGG 3 cut(s) 192, 280, 1194
BssMI GATC 2 cut(s) 138, 1234
BssNI GRCGYC 3 cut(s) 99, 120, 171
BssT1I CCWWGG 2 cut(s) 280, 1194
Bst4CI ACNGT 9 cut(s) 313, 373, 526, 579, 730, 1219, 1403, 1424, 1448
Bst6I CTCTTC 1 cut(s) 208
BstACI GRCGYC 3 cut(s) 99, 120, 171
BstAPI GCANNNNNTGC 2 cut(s) 740, 905
BstBAI YACGTR 1 cut(s) 762
BstBI TTCGAA 1 cut(s) 1334
BstC8I GCNNGC 3 cut(s) 568, 642, 1454
BstDEI CTNAG 5 cut(s) 384, 489, 631, 1344, 1533
BstDSI CCRYGG 2 cut(s) 280, 1194
BstEII GGTNACC 1 cut(s) 1223
BstF5I GGATG 6 cut(s) 40, 232, 353, 745, 814, 969
BstFNI CGCG 2 cut(s) 151, 1545
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 3 cut(s) 122, 153, 1545
BstKTI GATC 2 cut(s) 141, 1237
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 2 cut(s) 138, 1234
BstMCI CGRYCG 1 cut(s) 12
BstNSI RCATGY 4 cut(s) 714, 903, 1163, 1179
BstPAI GACNNNNGTC 1 cut(s) 1114
BstPI GGTNACC 1 cut(s) 1223
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 6 cut(s) 312, 372, 564, 906, 1122, 1266
BstSLI GKGCMC 1 cut(s) 1131
BstUI CGCG 2 cut(s) 151, 1545
BstV1I GCAGC 3 cut(s) 283, 1538, 1541
BstV2I GAAGAC 3 cut(s) 1110, 1404, 1490
BstXI CCANNNNNNTGG 2 cut(s) 1040, 1138
BsuI GTATCC 1 cut(s) 978
BsuRI GGCC 8 cut(s) 108, 279, 307, 570, 585, 1101, 1188, 1621
BtgI CCRYGG 2 cut(s) 280, 1194
BtgZI GCGATG 1 cut(s) 1449
BtsCI GGATG 6 cut(s) 40, 232, 353, 745, 814, 969
BtsI GCAGTG 2 cut(s) 741, 1131
BtsIMutI CAGTG 8 cut(s) 369, 522, 639, 735, 741, 1131, 1408, 1453
BveI ACCTGC 3 cut(s) 40, 899, 1591
Cac8I GCNNGC 3 cut(s) 568, 642, 1454
CaiI CAGNNNCTG 1 cut(s) 1532
CfoI GCGC 3 cut(s) 122, 153, 1545
Cfr10I RCCGGY 1 cut(s) 1604
Cfr13I GGNCC 2 cut(s) 277, 1100
CseI GACGC 1 cut(s) 107
Csp6I GTAC 5 cut(s) 87, 334, 580, 600, 903
CspAI ACCGGT 1 cut(s) 1604
CviQI GTAC 5 cut(s) 87, 334, 580, 600, 903
DdeI CTNAG 5 cut(s) 384, 489, 631, 1344, 1533
DinI GGCGCC 1 cut(s) 121
DpnI GATC 2 cut(s) 140, 1236
DpnII GATC 2 cut(s) 138, 1234
DraIII CACNNNGTG 1 cut(s) 528
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
EaeI YGGCCR 3 cut(s) 106, 583, 1186
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
EciI GGCGGA 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 280, 1194
Eco147I AGGCCT 2 cut(s) 570, 1621
Eco24I GRGCYC 1 cut(s) 820
Eco32I GATATC 2 cut(s) 178, 1144
Eco88I CYCGRG 1 cut(s) 193
Eco91I GGTNACC 1 cut(s) 1223
EcoO65I GGTNACC 1 cut(s) 1223
EcoRI GAATTC 2 cut(s) 291, 1348
EcoRV GATATC 2 cut(s) 178, 1144
EcoT14I CCWWGG 2 cut(s) 280, 1194
EcoT22I ATGCAT 1 cut(s) 1161
EcoT38I GRGCYC 1 cut(s) 820
EgeI GGCGCC 1 cut(s) 121
EheI GGCGCC 1 cut(s) 121
ErhI CCWWGG 2 cut(s) 280, 1194
Esp3I CGTCTC 1 cut(s) 8
FalI AAGNNNNNCTT 4 cut(s) 490, 522, 1315, 1347
FaqI GGGAC 2 cut(s) 110, 1122
FbaI TGATCA 1 cut(s) 1234
Fnu4HI GCNGC 7 cut(s) 109, 112, 272, 1296, 1524, 1527, 1530
FokI GGATG 6 cut(s) 47, 239, 340, 752, 821, 976
FriOI GRGCYC 1 cut(s) 820
Fsp4HI GCNGC 7 cut(s) 109, 112, 272, 1296, 1524, 1527, 1530
FspBI CTAG 2 cut(s) 537, 683
GlaI GCGC 3 cut(s) 121, 152, 1544
GluI GCNGC 7 cut(s) 109, 112, 272, 1296, 1524, 1527, 1530
GsaI CCCAGC 5 cut(s) 278, 434, 690, 1069, 1094
GsuI CTGGAG 1 cut(s) 1284
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 8 cut(s) 108, 279, 307, 570, 585, 1101, 1188, 1621
HapII CCGG 2 cut(s) 357, 1605
HgaI GACGC 1 cut(s) 107
HhaI GCGC 3 cut(s) 122, 153, 1545
Hin1I GRCGYC 3 cut(s) 99, 120, 171
Hin6I GCGC 3 cut(s) 120, 151, 1543
HinP1I GCGC 3 cut(s) 120, 151, 1543
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 1260
HinfI GANTC 6 cut(s) 183, 364, 1016, 1049, 1182, 1382
HpaII CCGG 2 cut(s) 357, 1605
HphI GGTGA 3 cut(s) 527, 965, 1235
Hpy166II GTNNAC 3 cut(s) 169, 892, 1181
Hpy188I TCNGA 5 cut(s) 182, 322, 1345, 1381, 1387
Hpy188III TCNNGA 3 cut(s) 13, 63, 863
Hpy8I GTNNAC 3 cut(s) 169, 892, 1181
Hpy99I CGWCG 3 cut(s) 176, 191, 828
HpyCH4III ACNGT 9 cut(s) 313, 373, 526, 579, 730, 1219, 1403, 1424, 1448
HpyCH4IV ACGT 3 cut(s) 89, 171, 761
HpyF3I CTNAG 5 cut(s) 384, 489, 631, 1344, 1533
HpySE526I ACGT 3 cut(s) 89, 171, 761
Hsp92I GRCGYC 3 cut(s) 99, 120, 171
HspAI GCGC 3 cut(s) 120, 151, 1543
KasI GGCGCC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 1234
Kzo9I GATC 2 cut(s) 138, 1234
LguI GCTCTTC 1 cut(s) 208
LmnI GCTCC 6 cut(s) 548, 799, 823, 1275, 1303, 1511
Lsp1109I GCAGC 3 cut(s) 283, 1538, 1541
LweI GCATC 3 cut(s) 730, 856, 1349
MaeI CTAG 2 cut(s) 537, 683
MaeII ACGT 3 cut(s) 89, 171, 761
MaeIII GTNAC 4 cut(s) 131, 379, 515, 1223
MalI GATC 2 cut(s) 140, 1236
MbiI CCGCTC 1 cut(s) 1298
MboI GATC 2 cut(s) 138, 1234
MboII GAAGA 8 cut(s) 195, 373, 1110, 1372, 1400, 1406, 1409, 1495
MfeI CAATTG 1 cut(s) 920
MhlI GDGCHC 2 cut(s) 820, 1131
MluCI AATT 5 cut(s) 291, 920, 939, 1000, 1348
Mly113I GGCGCC 1 cut(s) 120
MlyI GAGTC 2 cut(s) 1043, 1176
Mph1103I ATGCAT 1 cut(s) 1161
MseI TTAA 3 cut(s) 495, 942, 989
MspA1I CMGCKG 4 cut(s) 274, 430, 881, 1532
MspI CCGG 2 cut(s) 357, 1605
MspR9I CCNGG 1 cut(s) 358
MunI CAATTG 1 cut(s) 920
Mva1269I GAATGC 1 cut(s) 394
MvnI CGCG 2 cut(s) 151, 1545
NarI GGCGCC 1 cut(s) 120
NciI CCSGG 1 cut(s) 358
NcoI CCATGG 2 cut(s) 280, 1194
NdeII GATC 2 cut(s) 138, 1234
NlaIV GGNNCC 5 cut(s) 121, 819, 1284, 1461, 1603
NmeAIII GCCGAG 1 cut(s) 1164
NmuCI GTSAC 2 cut(s) 515, 1223
NsiI ATGCAT 1 cut(s) 1161
NspI RCATGY 4 cut(s) 714, 903, 1163, 1179
NspV TTCGAA 1 cut(s) 1334
PaqCI CACCTGC 2 cut(s) 40, 899
PceI AGGCCT 2 cut(s) 570, 1621
PciSI GCTCTTC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 4 cut(s) 183, 364, 1016, 1382
PflFI GACNNNGTC 1 cut(s) 1551
PflMI CCANNNNNTGG 1 cut(s) 1195
PfoI TCCNGGA 1 cut(s) 356
PinAI ACCGGT 1 cut(s) 1604
PkrI GCNGC 7 cut(s) 110, 113, 273, 1297, 1525, 1528, 1531
PleI GAGTC 2 cut(s) 1043, 1176
PluTI GGCGCC 1 cut(s) 123
PpsI GAGTC 2 cut(s) 1043, 1176
Ppu21I YACGTR 1 cut(s) 762
PshAI GACNNNNGTC 1 cut(s) 1114
PspEI GGTNACC 1 cut(s) 1223
PspFI CCCAGC 5 cut(s) 274, 430, 686, 1065, 1090
PspN4I GGNNCC 5 cut(s) 121, 819, 1284, 1461, 1603
PspPI GGNCC 2 cut(s) 277, 1100
PsrI GAACNNNNNNTAC 2 cut(s) 709, 741
PstI CTGCAG 3 cut(s) 568, 910, 1126
PstNI CAGNNNCTG 1 cut(s) 1532
PsyI GACNNNGTC 1 cut(s) 1551
PvuII CAGCTG 4 cut(s) 274, 430, 881, 1532
RsaI GTAC 5 cut(s) 88, 335, 581, 601, 904
RsaNI GTAC 5 cut(s) 87, 334, 580, 600, 903
SapI GCTCTTC 1 cut(s) 208
SaqAI TTAA 3 cut(s) 495, 942, 989
SatI GCNGC 7 cut(s) 109, 112, 272, 1296, 1524, 1527, 1530
Sau3AI GATC 2 cut(s) 138, 1234
Sau96I GGNCC 2 cut(s) 277, 1100
SchI GAGTC 2 cut(s) 1043, 1176
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 2 cut(s) 820, 1131
SfaNI GCATC 3 cut(s) 730, 856, 1349
SfcI CTRYAG 6 cut(s) 312, 372, 564, 906, 1122, 1266
SfoI GGCGCC 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 1334
SmlI CTYRAG 2 cut(s) 1148, 1241
SmoI CTYRAG 2 cut(s) 1148, 1241
Sse9I AATT 5 cut(s) 291, 920, 939, 1000, 1348
SseBI AGGCCT 2 cut(s) 570, 1621
SsiI CCGC 9 cut(s) 8, 81, 109, 112, 157, 238, 1296, 1523, 1545
SspDI GGCGCC 1 cut(s) 119
SspI AATATT 2 cut(s) 697, 853
SspMI CTAG 2 cut(s) 537, 683
StuI AGGCCT 2 cut(s) 570, 1621
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 2 cut(s) 280, 1194
TaaI ACNGT 9 cut(s) 313, 373, 526, 579, 730, 1219, 1403, 1424, 1448
TaiI ACGT 3 cut(s) 92, 174, 764
TaqI TCGA 5 cut(s) 12, 174, 231, 1307, 1334
TaqII GACCGA 1 cut(s) 1242
TasI AATT 5 cut(s) 291, 920, 939, 1000, 1348
TatI WGTACW 2 cut(s) 333, 902
TauI GCSGC 4 cut(s) 111, 114, 1298, 1526
TfiI GAWTC 4 cut(s) 183, 364, 1016, 1382
Tru1I TTAA 3 cut(s) 495, 942, 989
Tru9I TTAA 3 cut(s) 495, 942, 989
TscAI CASTG 8 cut(s) 376, 529, 639, 735, 741, 1131, 1408, 1453
TseFI GTSAC 2 cut(s) 515, 1223
TseI GCWGC 3 cut(s) 271, 1526, 1529
Tsp45I GTSAC 2 cut(s) 515, 1223
TspDTI ATGAA 5 cut(s) 342, 468, 663, 825, 1407
TspRI CASTG 8 cut(s) 376, 529, 639, 735, 741, 1131, 1408, 1453
Tth111I GACNNNGTC 1 cut(s) 1551
Van91I CCANNNNNTGG 1 cut(s) 1195
XapI RAATTY 3 cut(s) 291, 1000, 1348
XceI RCATGY 4 cut(s) 714, 903, 1163, 1179
XcmI CCANNNNNNNNNTGG 1 cut(s) 593
XspI CTAG 2 cut(s) 537, 683
ZraI GACGTC 1 cut(s) 172
Zsp2I ATGCAT 1 cut(s) 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.