Rh6BG475500

Protein RCC2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012326
Physical Location & Seq
Reverse (-)
68183064 .. 68187760
4697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG475500.1

Sequence Viewer

Length: 1284 bp
ATGTGTAGGTACAAGATTGTTGGAGCTGGATCAGGGAAGAGTCATACAGTAGTGGTTACGGAGGACGGCCATTCTCTGGCCTTTGGCTGGAATAAGCACGGACAGCTGGGTTCAGGCTCGGTAAAAAATGAAATTGAGGCATCCCCTGTTCGCTGTCAAGTTTCTGATGTTAAAACGGCTACCTGTGGCGGTGACTTCACTGTTTGGTTATCTTCTGTTGAAGGAGCTTCTATCCTAACTGCAGGTCTTCCACAGTATGGGCAACTCGGCCATGGAACAGATAATGAGTATAACACTAAAGACAGCTCAGTGAGGCTTGCTTATGAAGCTCAACCACGCCCTAAAGCAATAGCTTCTCTAGCTGGGGAAACCATTGTGAAAGTCGCTTGTGGAACAAATCATACAGTGGCAGTGGATGAAAAGGGCTATGTATATACGTGGGGCTTTGGTGGTTATGGAAGGCTTGGACATAGAGAGCAGAAGGATGAGTGGGCTCCTCGTCGTGTTGATGTTTTCCAGAGGCAAAATATCCTGCCTCCTAATGCAGTTATATCAGCTGGCTCAATGAACTCGGCATGTACTGCAGGTGGAGGGCAGTTGTATATGTGGGGTAAAATTAAAAGCACAGGTGATGACTGGATGTATCCTAAACCACTCATGGATTTAAGTGGTTGGAATTTGCGTTGCATGGATTCAGGCGGCATGCACCATTTTGTTGGTGCTGATTCTTCCTGCATAAGTTGGGGCCACGCTCAGTATGGAGAGCTGGGATATGGCCCCAATGGACAGAAGTCTTCTGCGGTACCCAAAAAAGTAGACATTCTTGAGGGTATGCATGTTATTAGTGTTGCATGTGGTCAGAACCATTCCATGGTAATTGTTGACAGGACTAATATTGGGGACCAACTTGATCAGCTTGATGTTTATGATGGCAAAGCTTCCGCTGAAGGGAGTGAGGAGCCAGAGAACGAGACTCCAGTAACTAAGCAAGCTCCTAAAAAGAGTGCTGCTAAGGCGTCTAGTAATTCCAAGAGGAAGAAGTCAAAAGAGTCTTCCGAGTCGGAAGATGAAGATGAAGACGAAGACGAAGATGACAATGACAGTGAGGAGAGTGATGATGAACAGGTCAACGGCAAGTATTCTAGGCAACGAGGTGGGAAGGCTTCTGGTAAGGGGCGAGGTAATGGTGCTAAACGTGGACGTGGCCGCCCTCCTTCAGCAAGTAAAAGCCCAAAGCCTGCAGCAGGGAAGGCCGGTAAGAGAGGAAGGCCTCGCAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

427

Amino Acids

45.68

Weight (kDa)

7.15

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 6 - 173 1.1e-34 RCC1-like domain
RCC1 PF00415 22 - 68 2.1e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 79 - 138 4.6e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 125 - 153 2.9e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 141 - 193 8.9e-09 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 184 - 296 3.7e-13 RCC1-like domain
RCC1 PF00415 246 - 293 3.3e-11 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19880
fragaria_vesca FvH4_2g38830 FvH4_2g38830
malus_domestica MD08G1015900.v1.1 MD15G1014900.v1.1
prunus_persica Prupe.1G369200_v2.0.a1 Prupe.1G369200_v2.0.a1
pyrus_communis pycom08g01390 pycom15g01290
rosa_chinensis RchiOBHm_Chr6g0302441
rosa_laevigata RLG00000011171
rosa_multiflora Rmu_sc0003633.1_g000040
rosa_roxburghii Rroxscaffold_7G00165780
rosa_rugosa Rorug06G0314300
rosa_samantha Rh6AG427200 Rh6BG475500 Rh6CG439400 Rh6DG426400
rosa_wichuraiana Rw6G036960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 575
Acc36I ACCTGC 2 cut(s) 233, 575
Acc65I GGTACC 1 cut(s) 802
AccB1I GGYRCC 1 cut(s) 802
AccB7I CCANNNNNTGG 3 cut(s) 76, 257, 871
AccI GTMKAC 1 cut(s) 816
AciI CCGC 5 cut(s) 189, 699, 800, 942, 1207
AclWI GGATC 1 cut(s) 37
AcoI YGGCCR 3 cut(s) 67, 268, 1204
AcsI RAATTY 1 cut(s) 676
AcuI CTGAAG 2 cut(s) 966, 1200
AcyI GRCGYC 1 cut(s) 1016
AfaI GTAC 3 cut(s) 11, 580, 804
AfiI CCNNNNNNNGG 6 cut(s) 76, 87, 257, 871, 948, 1244
AgsI TTSAA 1 cut(s) 221
AjiI CACGTC 1 cut(s) 1202
Alw26I GTCTC 1 cut(s) 965
AlwI GGATC 1 cut(s) 37
AoxI GGCC 8 cut(s) 67, 78, 268, 745, 775, 1204, 1251, 1268
ApeKI GCWGC 2 cut(s) 1007, 1241
ApoI RAATTY 1 cut(s) 676
Asp718I GGTACC 1 cut(s) 802
AspS9I GGNCC 3 cut(s) 745, 776, 901
AsuHPI GGTGA 2 cut(s) 203, 641
AvaII GGWCC 1 cut(s) 901
BanI GGYRCC 1 cut(s) 802
BanII GRGCYC 1 cut(s) 496
BbsI GAAGAC 5 cut(s) 239, 786, 1044, 1083, 1089
BbvI GCAGC 2 cut(s) 994, 1253
BccI CCATC 1 cut(s) 923
BceAI ACGGC 3 cut(s) 82, 192, 1147
BciVI GTATCC 1 cut(s) 654
BclI TGATCA 1 cut(s) 910
BcoDI GTCTC 1 cut(s) 965
BfaI CTAG 3 cut(s) 359, 1020, 1143
BfmI CTRYAG 3 cut(s) 240, 582, 1239
BfuAI ACCTGC 2 cut(s) 233, 575
BfuI GTATCC 1 cut(s) 654
BisI GCNGC 4 cut(s) 700, 1008, 1207, 1242
BlsI GCNGC 4 cut(s) 701, 1009, 1208, 1243
Bme18I GGWCC 1 cut(s) 901
BmgBI CACGTC 1 cut(s) 1202
BmgT120I GGNCC 3 cut(s) 745, 776, 901
BmiI GGNNCC 6 cut(s) 495, 746, 778, 804, 902, 960
BmsI GCATC 1 cut(s) 149
BoxI GACNNNNGTC 1 cut(s) 790
BpiI GAAGAC 5 cut(s) 239, 786, 1044, 1083, 1089
BpmI CTGGAG 1 cut(s) 960
Bpu10I CCTNAGC 1 cut(s) 1011
BpuEI CTTGAG 1 cut(s) 845
BsaAI YACGTR 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 1016
BsaJI CCNNGG 2 cut(s) 271, 870
Bsc4I CCNNNNNNNGG 6 cut(s) 76, 87, 257, 871, 948, 1244
Bse118I RCCGGY 1 cut(s) 1253
Bse1I ACTGG 2 cut(s) 641, 977
BseDI CCNNGG 2 cut(s) 271, 870
BseGI GGATG 4 cut(s) 140, 421, 490, 645
BseLI CCNNNNNNNGG 6 cut(s) 76, 87, 257, 871, 948, 1244
BseMII CTCAG 2 cut(s) 321, 767
BseNI ACTGG 2 cut(s) 641, 977
BseRI GAGGAG 3 cut(s) 486, 971, 1121
BseXI GCAGC 2 cut(s) 994, 1253
BseYI CCCAGC 3 cut(s) 106, 362, 766
BshFI GGCC 8 cut(s) 69, 80, 270, 747, 777, 1206, 1253, 1270
BshNI GGYRCC 1 cut(s) 802
BsiSI CCGG 1 cut(s) 1254
BslFI GGGAC 1 cut(s) 914
BslI CCNNNNNNNGG 6 cut(s) 76, 87, 257, 871, 948, 1244
BsmAI GTCTC 1 cut(s) 965
BsmFI GGGAC 1 cut(s) 914
BsnI GGCC 8 cut(s) 69, 80, 270, 747, 777, 1206, 1253, 1270
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 2 cut(s) 29, 910
Bsp19I CCATGG 2 cut(s) 271, 870
BspACI CCGC 5 cut(s) 189, 699, 800, 942, 1207
BspANI GGCC 8 cut(s) 69, 80, 270, 747, 777, 1206, 1253, 1270
BspCNI CTCAG 2 cut(s) 320, 766
BspLI GGNNCC 6 cut(s) 495, 746, 778, 804, 902, 960
BspMAI CTGCAG 3 cut(s) 244, 586, 1243
BspMI ACCTGC 2 cut(s) 233, 575
BspPI GGATC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 802
BsrFI RCCGGY 1 cut(s) 1253
BsrI ACTGG 2 cut(s) 641, 977
BssAI RCCGGY 1 cut(s) 1253
BssECI CCNNGG 2 cut(s) 271, 870
BssMI GATC 2 cut(s) 29, 910
BssNI GRCGYC 1 cut(s) 1016
BssT1I CCWWGG 2 cut(s) 271, 870
Bst4CI ACNGT 5 cut(s) 49, 202, 255, 406, 1103
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 1016
BstAPI GCANNNNNTGC 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 438
BstC8I GCNNGC 5 cut(s) 318, 559, 704, 990, 1239
BstDEI CTNAG 4 cut(s) 307, 753, 984, 1011
BstDSI CCRYGG 2 cut(s) 271, 870
BstENI CCTNNNNNAGG 1 cut(s) 1242
BstF5I GGATG 4 cut(s) 140, 421, 490, 645
BstKTI GATC 2 cut(s) 32, 913
BstMAI GTCTC 1 cut(s) 965
BstMBI GATC 2 cut(s) 29, 910
BstMWI GCNNNNNNNGC 6 cut(s) 103, 326, 359, 581, 1013, 1250
BstNSI RCATGY 4 cut(s) 579, 706, 839, 855
BstPAI GACNNNNGTC 1 cut(s) 790
BstSFI CTRYAG 3 cut(s) 240, 582, 1239
BstV1I GCAGC 2 cut(s) 994, 1253
BstV2I GAAGAC 5 cut(s) 239, 786, 1044, 1083, 1089
BstXI CCANNNNNNTGG 1 cut(s) 716
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 8 cut(s) 69, 80, 270, 747, 777, 1206, 1253, 1270
BtgI CCRYGG 2 cut(s) 271, 870
BtrI CACGTC 1 cut(s) 1202
BtsCI GGATG 4 cut(s) 140, 421, 490, 645
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 5 cut(s) 198, 315, 411, 417, 1108
BveI ACCTGC 2 cut(s) 233, 575
Cac8I GCNNGC 5 cut(s) 318, 559, 704, 990, 1239
Cfr10I RCCGGY 1 cut(s) 1253
Cfr13I GGNCC 3 cut(s) 745, 776, 901
CseI GACGC 1 cut(s) 1005
Csp6I GTAC 3 cut(s) 10, 579, 803
CviAII CATG 8 cut(s) 272, 576, 658, 688, 703, 836, 852, 871
CviQI GTAC 3 cut(s) 10, 579, 803
DdeI CTNAG 4 cut(s) 307, 753, 984, 1011
DpnI GATC 2 cut(s) 31, 912
DpnII GATC 2 cut(s) 29, 910
EaeI YGGCCR 3 cut(s) 67, 268, 1204
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 271, 870
Eco147I AGGCCT 1 cut(s) 1270
Eco24I GRGCYC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 901
Eco57I CTGAAG 2 cut(s) 966, 1200
EcoNI CCTNNNNNAGG 1 cut(s) 1242
EcoT14I CCWWGG 2 cut(s) 271, 870
EcoT22I ATGCAT 1 cut(s) 837
EcoT38I GRGCYC 1 cut(s) 496
ErhI CCWWGG 2 cut(s) 271, 870
FaeI CATG 8 cut(s) 275, 579, 661, 691, 706, 839, 855, 874
FaqI GGGAC 1 cut(s) 914
FatI CATG 8 cut(s) 271, 575, 657, 687, 702, 835, 851, 870
FbaI TGATCA 1 cut(s) 910
FblI GTMKAC 1 cut(s) 816
Fnu4HI GCNGC 4 cut(s) 700, 1008, 1207, 1242
FokI GGATG 4 cut(s) 127, 428, 497, 652
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 4 cut(s) 700, 1008, 1207, 1242
FspBI CTAG 3 cut(s) 359, 1020, 1143
GluI GCNGC 4 cut(s) 700, 1008, 1207, 1242
GsaI CCCAGC 3 cut(s) 110, 366, 770
GsuI CTGGAG 1 cut(s) 960
HaeIII GGCC 8 cut(s) 69, 80, 270, 747, 777, 1206, 1253, 1270
HapII CCGG 1 cut(s) 1254
HgaI GACGC 1 cut(s) 1005
Hin1I GRCGYC 1 cut(s) 1016
Hin1II CATG 8 cut(s) 275, 579, 661, 691, 706, 839, 855, 874
HincII GTYRAC 2 cut(s) 883, 1129
HindII GTYRAC 2 cut(s) 883, 1129
HindIII AAGCTT 1 cut(s) 936
HinfI GANTC 6 cut(s) 40, 692, 725, 973, 1049, 1058
HpaII CCGG 1 cut(s) 1254
HphI GGTGA 2 cut(s) 203, 641
Hpy166II GTNNAC 4 cut(s) 817, 883, 1129, 1199
Hpy188I TCNGA 4 cut(s) 166, 861, 1057, 1063
Hpy188III TCNNGA 2 cut(s) 517, 824
Hpy8I GTNNAC 4 cut(s) 817, 883, 1129, 1199
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 8 cut(s) 215, 453, 475, 941, 1153, 1224, 1243, 1260
HpyCH4III ACNGT 5 cut(s) 49, 202, 255, 406, 1103
HpyCH4IV ACGT 3 cut(s) 437, 1195, 1201
HpyCH4V TGCA 9 cut(s) 242, 545, 584, 687, 706, 735, 835, 851, 1241
HpyF10VI GCNNNNNNNGC 6 cut(s) 103, 326, 359, 581, 1013, 1250
HpyF3I CTNAG 4 cut(s) 307, 753, 984, 1011
HpySE526I ACGT 3 cut(s) 437, 1195, 1201
Hsp92I GRCGYC 1 cut(s) 1016
Hsp92II CATG 8 cut(s) 275, 579, 661, 691, 706, 839, 855, 874
KpnI GGTACC 1 cut(s) 806
Ksp22I TGATCA 1 cut(s) 910
Kzo9I GATC 2 cut(s) 29, 910
LmnI GCTCC 5 cut(s) 23, 224, 499, 958, 997
Lsp1109I GCAGC 2 cut(s) 994, 1253
LweI GCATC 1 cut(s) 149
MaeI CTAG 3 cut(s) 359, 1020, 1143
MaeII ACGT 3 cut(s) 437, 1195, 1201
MaeIII GTNAC 3 cut(s) 55, 191, 979
MalI GATC 2 cut(s) 31, 912
MboI GATC 2 cut(s) 29, 910
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 5 cut(s) 132, 615, 676, 876, 1024
MlyI GAGTC 4 cut(s) 49, 967, 1058, 1067
MmeI TCCRAC 2 cut(s) 653, 1041
Mph1103I ATGCAT 1 cut(s) 837
MseI TTAA 3 cut(s) 171, 618, 665
MspA1I CMGCKG 3 cut(s) 106, 557, 944
MspI CCGG 1 cut(s) 1254
MwoI GCNNNNNNNGC 6 cut(s) 103, 326, 359, 581, 1013, 1250
NcoI CCATGG 2 cut(s) 271, 870
NdeII GATC 2 cut(s) 29, 910
NlaIII CATG 8 cut(s) 275, 579, 661, 691, 706, 839, 855, 874
NlaIV GGNNCC 6 cut(s) 495, 746, 778, 804, 902, 960
NmeAIII GCCGAG 2 cut(s) 246, 551
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 837
NspI RCATGY 4 cut(s) 579, 706, 839, 855
PaeI GCATGC 1 cut(s) 706
PaqCI CACCTGC 1 cut(s) 575
PceI AGGCCT 1 cut(s) 1270
PfeI GAWTC 2 cut(s) 692, 725
PflMI CCANNNNNTGG 3 cut(s) 76, 257, 871
PkrI GCNGC 4 cut(s) 701, 1009, 1208, 1243
PleI GAGTC 4 cut(s) 48, 967, 1057, 1066
PpsI GAGTC 4 cut(s) 48, 967, 1057, 1066
Ppu21I YACGTR 1 cut(s) 438
PshAI GACNNNNGTC 1 cut(s) 790
PspFI CCCAGC 3 cut(s) 106, 362, 766
PspN4I GGNNCC 6 cut(s) 495, 746, 778, 804, 902, 960
PspPI GGNCC 3 cut(s) 745, 776, 901
PsrI GAACNNNNNNTAC 2 cut(s) 385, 417
PstI CTGCAG 3 cut(s) 244, 586, 1243
PvuII CAGCTG 2 cut(s) 106, 557
RsaI GTAC 3 cut(s) 11, 580, 804
RsaNI GTAC 3 cut(s) 10, 579, 803
SaqAI TTAA 3 cut(s) 171, 618, 665
SatI GCNGC 4 cut(s) 700, 1008, 1207, 1242
Sau3AI GATC 2 cut(s) 29, 910
Sau96I GGNCC 3 cut(s) 745, 776, 901
SchI GAGTC 4 cut(s) 49, 967, 1058, 1067
SduI GDGCHC 1 cut(s) 496
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 3 cut(s) 240, 582, 1239
SinI GGWCC 1 cut(s) 901
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
SphI GCATGC 1 cut(s) 706
Sse9I AATT 5 cut(s) 132, 615, 676, 876, 1024
SseBI AGGCCT 1 cut(s) 1270
SsiI CCGC 5 cut(s) 189, 699, 800, 942, 1207
SspI AATATT 1 cut(s) 895
SspMI CTAG 3 cut(s) 359, 1020, 1143
StuI AGGCCT 1 cut(s) 1270
StyI CCWWGG 2 cut(s) 271, 870
TaaI ACNGT 5 cut(s) 49, 202, 255, 406, 1103
TaiI ACGT 3 cut(s) 440, 1198, 1204
TasI AATT 5 cut(s) 132, 615, 676, 876, 1024
TatI WGTACW 1 cut(s) 578
TauI GCSGC 2 cut(s) 702, 1209
TfiI GAWTC 2 cut(s) 692, 725
Tru1I TTAA 3 cut(s) 171, 618, 665
Tru9I TTAA 3 cut(s) 171, 618, 665
TscAI CASTG 5 cut(s) 205, 315, 411, 417, 1108
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 1007, 1241
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 7 cut(s) 144, 339, 432, 581, 1083, 1089, 1134
TspGWI ACGGA 2 cut(s) 74, 114
TspRI CASTG 5 cut(s) 205, 315, 411, 417, 1108
Van91I CCANNNNNTGG 3 cut(s) 76, 257, 871
VpaK11BI GGWCC 1 cut(s) 901
XagI CCTNNNNNAGG 1 cut(s) 1242
XapI RAATTY 1 cut(s) 676
XceI RCATGY 4 cut(s) 579, 706, 839, 855
XcmI CCANNNNNNNNNTGG 1 cut(s) 755
XmiI GTMKAC 1 cut(s) 816
XspI CTAG 3 cut(s) 359, 1020, 1143
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.